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ROGE-ENGINE

Rhino ontology generation engine.

Description

This is an ontology generation framework implemented in Rhino/javascript on top of OWLTools and the OWLAPI.

It can be configured for a wide variery of patterns. So far the ontology conifguration is for phenotype ontologies

Quickstart

  • install OWLTools
  • copy pato.owl and caro.owl to ontologies/ directory
  • owlrhino -f generators/run-phenotype.js

open the resulting ontology (out/t.owl) in Protege and classify using Elk

See also

https://github.com/cmungall/shoge

Whilst Shoge is in some ways superior and allows high-level declarative grammars for ontology generation, it is harder to use since it is entirely prolog. ROGE makes use of the Manchester OWLAPI.

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