Code to test Rt estimates against synthetic data
Python implementation of nonlinear embedding methods
Code to accompany the manuscript "Age-specific differences in the dynamics of protective immunity to influenza"
Example code for deconvolving epidemic time series
Model of germinal center B-cell affinity maturation.
- flu_strain_compare Public
Visualizing mutations and PNGS changes between two strains
- FluVE_repeatvac_public Public
- lab_handbook Public
- v_gene_selection Public
V gene usage in mice infected with flu.
- Nextstrain-on-HPC Public
How to install and run Nextstrain in HPC environments
- digital-repeatability Public
Materials for digital repeatability training
- imprinting Public
Code to reconstruct influenza imprinting probabilities from 1918 to present
- code-structure-training Public
Materials for code structure training
- version-control-training Public
Materials for version control training
Most used topics