Code for rough estimates from data
Example code for deconvolving epidemic time series
Code to test Rt estimates against synthetic data
Data and analyses for Gouma et al
Data and code for Arevalo et al., 2019
Projections of COVID-19, in standardized format
Collaboration with Patrick's Wilson's group, led by Carole Henry: Aged individuals no longer efficiently adapt their B cell responses to influenza
Code to accompany the manuscript "Age-specific differences in the dynamics of protective immunity to influenza"
Self-contained, publication-ready repository for the evolution of mutability project.
This repository contains analyses for a collaboration led by Patrick Wilson's lab on the phylogenetic relatedness of B cells with different isotypes.
Repository for B-Cell population dynamical models of immunodominance
Model of germinal center B-cell affinity maturation.
Python implementation of nonlinear embedding methods
Simulating virus evolution and epidemiology
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