cobeylab

Repositories

• covid_IL
  R 1 0 0 0 Updated Feb 16, 2021

• influenza_B_distributions
  R 0 0 0 0 Updated Feb 12, 2021

• rough_rt

  Code for rough estimates from data
  R 0 1 0 0 Updated Jan 21, 2021

• epidemic-deconvolution

  Example code for deconvolving epidemic time series
  R 2 3 0 0 Updated Dec 30, 2020

• Rt_estimation

  Code to test Rt estimates against synthetic data
  R 11 9 0 0 Updated Nov 30, 2020

• Flu-Middle-aged

  Data and analyses for Gouma et al
  Python 0 0 0 0 Updated Jul 22, 2020

• FluAImprinting

  Data and code for Arevalo et al., 2019
  Jupyter Notebook Apache-2.0 1 1 0 0 Updated Jul 13, 2020

• covid19-forecast-hub

  Forked from reichlab/covid19-forecast-hub

  Projections of COVID-19, in standardized format
  JavaScript 214 0 0 0 Updated May 20, 2020

• vaccine-manuscript
  Java 0 0 0 0 Updated May 4, 2020

• sitrep

  Forked from COVID-19-Mobility-Data-Network/sitrep
  HTML GPL-3.0 5 1 0 0 Updated Apr 3, 2020

• flu_response_aging

  Collaboration with Patrick's Wilson's group, led by Carole Henry: Aged individuals no longer efficiently adapt their B cell responses to influenza
  R 0 0 0 0 Updated Jul 16, 2019

• Influenza-immune-dynamics

  Code to accompany the manuscript "Age-specific differences in the dynamics of protective immunity to influenza"
  R 1 2 0 0 Updated Mar 8, 2019

• lab_handbook
  HTML CC0-1.0 0 0 0 0 Updated Nov 30, 2018

• flu-vaccine-sieve
  Jupyter Notebook 0 0 0 0 Updated Sep 15, 2018

• evolution_of_mutability

  Self-contained, publication-ready repository for the evolution of mutability project.
  Python 0 0 0 0 Updated Apr 24, 2018

• H3N2_glycosylation
  R 0 0 0 0 Updated Nov 6, 2017

• isotype_phylogenetics

  This repository contains analyses for a collaboration led by Patrick Wilson's lab on the phylogenetic relatedness of B cells with different isotypes.
  Python 0 0 0 0 Updated Oct 7, 2017

• bcell_id_pop_model

  Repository for B-Cell population dynamical models of immunodominance
  R 0 0 0 0 Updated Sep 1, 2017

• HPV-model
  R 2 0 0 0 Updated Aug 21, 2017

• antigen-vaccine
  Java 1 0 0 0 Updated Jun 7, 2017

• pneumo-resistance
  Python 0 1 0 0 Updated Jun 6, 2017

• ccm-letter
  R 0 0 1 0 Updated Jan 9, 2017

• causality_manuscript
  PostScript 0 0 1 0 Updated Dec 9, 2016

• gcdynamics

  Model of germinal center B-cell affinity maturation.
  C++ 2 2 1 0 Updated Oct 1, 2016

• influenza_phylogeography_manuscript
  Mathematica 1 2 0 0 Updated Sep 2, 2016

• antigen-phylogeography
  Java 1 4 0 0 Updated Sep 2, 2016

• pyembedding

  Python implementation of nonlinear embedding methods
  Python 3 9 0 0 Updated Jan 5, 2016

• antigen

  Forked from trvrb/antigen

  Simulating virus evolution and epidemiology
  Mathematica 7 0 0 0 Updated Mar 3, 2015