From 6c64ab20105aeebb0b05c719e9a1f5072c88cc5c Mon Sep 17 00:00:00 2001 From: Rushil Patel Date: Fri, 14 Feb 2025 18:22:12 -0500 Subject: [PATCH 01/33] fix: add initial server with run and codebase initialization --- .../codegen-mcp-server/pyproject.toml | 13 + .../examples/codegen-mcp-server/server.py | 94 + .../examples/codegen-mcp-server/uv.lock | 2266 +++++++++++++++++ 3 files changed, 2373 insertions(+) create mode 100644 codegen-examples/examples/codegen-mcp-server/pyproject.toml create mode 100644 codegen-examples/examples/codegen-mcp-server/server.py create mode 100644 codegen-examples/examples/codegen-mcp-server/uv.lock diff --git a/codegen-examples/examples/codegen-mcp-server/pyproject.toml b/codegen-examples/examples/codegen-mcp-server/pyproject.toml new file mode 100644 index 000000000..0bbde4648 --- /dev/null +++ b/codegen-examples/examples/codegen-mcp-server/pyproject.toml @@ -0,0 +1,13 @@ +[project] +name = "codegen-mcp-server" +version = "0.1.0" +description = "Add your description here" +readme = "README.md" +requires-python = ">=3.13" +dependencies = [ + "codegen>=0.14.5", + "mcp>=1.2.1", +] + +[tool.poetry.scripts] +codegen-mcp-server = "server:main" diff --git a/codegen-examples/examples/codegen-mcp-server/server.py b/codegen-examples/examples/codegen-mcp-server/server.py new file mode 100644 index 000000000..4af8d0d1b --- /dev/null +++ b/codegen-examples/examples/codegen-mcp-server/server.py @@ -0,0 +1,94 @@ +import asyncio +from dataclasses import dataclass, field +from typing import Annotated, Optional, Dict, Any, List +from mcp.server.fastmcp import FastMCP +from codegen import Codebase + +@dataclass +class CodebaseState: + """Class to manage codebase state and parsing.""" + parse_task: Optional[asyncio.Task] = None + parsed_codebase: Optional[Codebase] = None + log_buffer: List[str] = field(default_factory=list) + + async def parse(self, path: str) -> Codebase: + """Parse the codebase at the given path.""" + codebase = Codebase(path) + self.parsed_codebase = codebase + return codebase + + def reset(self) -> None: + """Reset the state.""" + if self.parsed_codebase: + self.parsed_codebase.reset() + self.log_buffer.clear() + +# Initialize FastMCP server +mcp = FastMCP( + "codegen-mcp-server", + instructions="""This server provides tools to parse and modify a codebase using codemods. + It can initiate parsing, check parsing status, and execute codemods.""", +) + +# Initialize state +state = CodebaseState() + +def capture_output(*args, **kwargs) -> None: + """Capture and log output messages.""" + for arg in args: + state.log_buffer.append(str(arg)) + +@mcp.tool(name="parse_codebase", description="Initiate codebase parsing") +async def parse_codebase( + codebase_path: Annotated[str, "path to the codebase to be parsed"] +) -> Dict[str, str]: + if not state.parse_task or state.parse_task.done(): + state.parse_task = asyncio.create_task(state.parse(codebase_path)) + return {"message": "Codebase parsing initiated, this may take some time depending on the size of the codebase. Use the `check_parsing_status` tool to check if the parse has completed."} + return {"message": "Codebase is already being parsed."} + +@mcp.tool(name="check_parsing_status", description="Check if codebase parsing has completed") +async def check_parsing_status() -> Dict[str, str]: + if not state.parse_task: + return {"message": "No codebase provided to parse."} + if state.parse_task.done(): + return {"message": "Codebase parsing completed."} + return {"message": "Codebase parsing in progress."} + +@mcp.tool(name="execute_codemod", description="Execute a codemod on the codebase") +async def execute_codemod( + codemod: Annotated[str, "The python codemod code to execute on the codebase"] +) -> Dict[str, Any]: + if not state.parse_task or not state.parse_task.done(): + return {"error": "Codebase is not ready for codemod execution."} + + try: + codebase = await state.parse_task + # TODO: Implement proper sandboxing for code execution + context = { + "codebase": state.parsed_codebase, + "print": capture_output, + } + exec(codemod, context) + + logs = "\n".join(state.log_buffer) + + state.reset() + return { + "message": "Codemod executed and codebase reset.", + "logs": logs + } + except Exception as e: + return { + "error": f"Error executing codemod: {str(e)}", + "details": { + "type": type(e).__name__, + "message": str(e) + } + } + +if __name__ == "__main__": + print('starting codegen-mcp-server') + run = mcp.run_stdio_async() + print('codegen-mcp-server started') + asyncio.run(run) diff --git a/codegen-examples/examples/codegen-mcp-server/uv.lock b/codegen-examples/examples/codegen-mcp-server/uv.lock new file mode 100644 index 000000000..2df96cd0a --- /dev/null +++ b/codegen-examples/examples/codegen-mcp-server/uv.lock @@ -0,0 +1,2266 @@ +version = 1 +requires-python = ">=3.13" + +[[package]] +name = "aiohappyeyeballs" +version = "2.4.6" +source = { registry = "https://pypi.org/simple" } +sdist = { url = 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b/codegen-examples/examples/codegen-mcp-server/pyproject.toml index 0bbde4648..8ad1ad3ca 100644 --- a/codegen-examples/examples/codegen-mcp-server/pyproject.toml +++ b/codegen-examples/examples/codegen-mcp-server/pyproject.toml @@ -4,10 +4,7 @@ version = "0.1.0" description = "Add your description here" readme = "README.md" requires-python = ">=3.13" -dependencies = [ - "codegen>=0.14.5", - "mcp>=1.2.1", -] +dependencies = ["codegen>=0.14.5", "mcp>=1.2.1"] [tool.poetry.scripts] codegen-mcp-server = "server:main" diff --git a/codegen-examples/examples/codegen-mcp-server/server.py b/codegen-examples/examples/codegen-mcp-server/server.py index 4af8d0d1b..f5370fb09 100644 --- a/codegen-examples/examples/codegen-mcp-server/server.py +++ b/codegen-examples/examples/codegen-mcp-server/server.py @@ -4,9 +4,11 @@ from mcp.server.fastmcp import FastMCP from codegen import Codebase + @dataclass class CodebaseState: """Class to manage codebase state and parsing.""" + parse_task: Optional[asyncio.Task] = None parsed_codebase: Optional[Codebase] = None log_buffer: List[str] = field(default_factory=list) @@ -23,30 +25,32 @@ def reset(self) -> None: self.parsed_codebase.reset() self.log_buffer.clear() + # Initialize FastMCP server mcp = FastMCP( "codegen-mcp-server", - instructions="""This server provides tools to parse and modify a codebase using codemods. + instructions="""This server provides tools to parse and modify a codebase using codemods. It can initiate parsing, check parsing status, and execute codemods.""", ) # Initialize state state = CodebaseState() + def capture_output(*args, **kwargs) -> None: """Capture and log output messages.""" for arg in args: state.log_buffer.append(str(arg)) + @mcp.tool(name="parse_codebase", description="Initiate codebase parsing") -async def parse_codebase( - codebase_path: Annotated[str, "path to the codebase to be parsed"] -) -> Dict[str, str]: +async def parse_codebase(codebase_path: Annotated[str, "path to the codebase to be parsed"]) -> Dict[str, str]: if not state.parse_task or state.parse_task.done(): state.parse_task = asyncio.create_task(state.parse(codebase_path)) return {"message": "Codebase parsing initiated, this may take some time depending on the size of the codebase. Use the `check_parsing_status` tool to check if the parse has completed."} return {"message": "Codebase is already being parsed."} + @mcp.tool(name="check_parsing_status", description="Check if codebase parsing has completed") async def check_parsing_status() -> Dict[str, str]: if not state.parse_task: @@ -55,15 +59,14 @@ async def check_parsing_status() -> Dict[str, str]: return {"message": "Codebase parsing completed."} return {"message": "Codebase parsing in progress."} + @mcp.tool(name="execute_codemod", description="Execute a codemod on the codebase") -async def execute_codemod( - codemod: Annotated[str, "The python codemod code to execute on the codebase"] -) -> Dict[str, Any]: +async def execute_codemod(codemod: Annotated[str, "The python codemod code to execute on the codebase"]) -> Dict[str, Any]: if not state.parse_task or not state.parse_task.done(): return {"error": "Codebase is not ready for codemod execution."} - + try: - codebase = await state.parse_task + await state.parse_task # TODO: Implement proper sandboxing for code execution context = { "codebase": state.parsed_codebase, @@ -72,23 +75,15 @@ async def execute_codemod( exec(codemod, context) logs = "\n".join(state.log_buffer) - + state.reset() - return { - "message": "Codemod executed and codebase reset.", - "logs": logs - } + return {"message": "Codemod executed and codebase reset.", "logs": logs} except Exception as e: - return { - "error": f"Error executing codemod: {str(e)}", - "details": { - "type": type(e).__name__, - "message": str(e) - } - } + return {"error": f"Error executing codemod: {str(e)}", "details": {"type": type(e).__name__, "message": str(e)}} + if __name__ == "__main__": - print('starting codegen-mcp-server') + print("starting codegen-mcp-server") run = mcp.run_stdio_async() - print('codegen-mcp-server started') + print("codegen-mcp-server started") asyncio.run(run) From 538418e33536c42a31d19fd3ec12b17013399cc7 Mon Sep 17 00:00:00 2001 From: Rushil Patel Date: Tue, 18 Feb 2025 08:25:58 -0800 Subject: [PATCH 03/33] nit: update toml --- .../examples/codegen-mcp-server/pyproject.toml | 14 +++++++++++--- 1 file changed, 11 insertions(+), 3 deletions(-) diff --git a/codegen-examples/examples/codegen-mcp-server/pyproject.toml b/codegen-examples/examples/codegen-mcp-server/pyproject.toml index 8ad1ad3ca..e03b0d72e 100644 --- a/codegen-examples/examples/codegen-mcp-server/pyproject.toml +++ b/codegen-examples/examples/codegen-mcp-server/pyproject.toml @@ -1,10 +1,18 @@ [project] name = "codegen-mcp-server" version = "0.1.0" -description = "Add your description here" +description = "MCP server implementation adding tools for the Codegen SDK" readme = "README.md" -requires-python = ">=3.13" -dependencies = ["codegen>=0.14.5", "mcp>=1.2.1"] +requires-python = ">=3.12" +dependencies = [ + "codegen>=0.14.5", + "fastmcp>=1.2.1", + "uvicorn>=0.27.1", + "fastapi>=0.110.0", + "pydantic>=2.6.3", + "rich>=13.7.1", + "click>=8.1.7", +] [tool.poetry.scripts] codegen-mcp-server = "server:main" From e8fcb044595fd25bade04432186115dc4228206a Mon Sep 17 00:00:00 2001 From: tomcodgen Date: Fri, 14 Feb 2025 18:35:45 +0100 Subject: [PATCH 04/33] [CG-10829] fix: import wildcard doesn't preserve import resolution (#502) Importing from a file that contains a wildcard can break further resolution. This could occur depending on to_resolve ordering, if the outer file is processed first _wildcards will not be filled in time. --------- Co-authored-by: tomcodegen Co-authored-by: tomcodgen <191515280+tomcodgen@users.noreply.github.com> --- src/codegen/sdk/core/import_resolution.py | 2 ++ .../test_import_resolution.py | 27 +++++++++++++++++++ 2 files changed, 29 insertions(+) diff --git a/src/codegen/sdk/core/import_resolution.py b/src/codegen/sdk/core/import_resolution.py index 7e6aa6538..6022aff3e 100644 --- a/src/codegen/sdk/core/import_resolution.py +++ b/src/codegen/sdk/core/import_resolution.py @@ -607,6 +607,8 @@ def names(self) -> Generator[tuple[str, Self | WildcardImport[Self]], None, None imp.file.invalidate() return + elif self.resolved_symbol is None: + self._resolving_wildcards = False yield self.name, self @property diff --git a/tests/unit/codegen/sdk/python/import_resolution/test_import_resolution.py b/tests/unit/codegen/sdk/python/import_resolution/test_import_resolution.py index 9f3ebfc8d..6fd9cbe7b 100644 --- a/tests/unit/codegen/sdk/python/import_resolution/test_import_resolution.py +++ b/tests/unit/codegen/sdk/python/import_resolution/test_import_resolution.py @@ -341,3 +341,30 @@ def some_func(): # Verify usages are detected assert len(some_func.usages) > 0 assert len(some_func.symbol_usages) > 0 + + +def test_import_wildcard_preserves_import_resolution(tmpdir: str) -> None: + """Tests importing from a file that contains a wildcard import doesn't break further resolution. + This could occur depending on to_resolve ordering, if the outer file is processed first _wildcards will not be filled in time. + """ + # language=python + with get_codebase_session( + tmpdir, + files={ + "testdir/sub/file.py": """ + test_const=5 + b=2 + """, + "testdir/file.py": """ + from testdir.sub.file import * + c=b + """, + "file.py": """ + from testdir.file import test_const + test = test_const + """, + }, + ) as codebase: + mainfile: SourceFile = codebase.get_file("file.py") + + assert len(mainfile.ctx.edges) == 5 From db5d9aada2db3b7eb1e9f764425131bebb97dcb1 Mon Sep 17 00:00:00 2001 From: Edo Pujol Date: Fri, 14 Feb 2025 12:41:32 -0500 Subject: [PATCH 05/33] docs: fix initialization (#504) # Motivation # Content # Testing # Please check the following before marking your PR as ready for review - [x ] I have added tests for my changes - [x ] I have updated the documentation or added new documentation as needed --- docs/building-with-codegen/parsing-codebases.mdx | 13 ++++--------- 1 file changed, 4 insertions(+), 9 deletions(-) diff --git a/docs/building-with-codegen/parsing-codebases.mdx b/docs/building-with-codegen/parsing-codebases.mdx index 1118e6a60..4a35a0410 100644 --- a/docs/building-with-codegen/parsing-codebases.mdx +++ b/docs/building-with-codegen/parsing-codebases.mdx @@ -44,13 +44,12 @@ codebase = Codebase("./", language="typescript") To fetch and parse a repository directly from GitHub, use the `from_repo` function. ```python -import codegen - +from codegen import Codebase # Fetch and parse a repository (defaults to /tmp/codegen/{repo_name}) -codebase = codegen.from_repo('fastapi/fastapi') +codebase = Codebase.from_repo('fastapi/fastapi') # Customize temp directory, clone depth, specific commit, or programming language -codebase = codegen.from_repo( +codebase = Codebase.from_repo( 'fastapi/fastapi', tmp_dir='/custom/temp/dir', # Optional: custom temp directory commit='786a8ada7ed0c7f9d8b04d49f24596865e4b7901', # Optional: specific commit @@ -70,7 +69,7 @@ You can customize the behavior of your Codebase instance by passing a `CodebaseC ```python from codegen import Codebase -from codegen.sdk.codebase.config import CodebaseConfig, GSFeatureFlags, Secrets +from codegen.sdk.codebase.config import CodebaseConfig, Secrets codebase = Codebase( "path/to/repository", @@ -78,10 +77,6 @@ codebase = Codebase( secrets=Secrets( openai_key="your-openai-key" # For AI-powered features ), - feature_flags=GSFeatureFlags( - sync_enabled=True, # Enable graph synchronization - ... # Add other feature flags as needed - ) ) ) ``` From c3f7474923211d2fecd7deffd96a0af3db469dfc Mon Sep 17 00:00:00 2001 From: Jay Hack Date: Fri, 14 Feb 2025 15:55:04 -0800 Subject: [PATCH 06/33] feat: adds linear tools (#499) --- pyproject.toml | 1 + src/codegen/extensions/events/app.py | 2 +- src/codegen/extensions/events/interface.py | 2 +- src/codegen/extensions/events/linear.py | 2 +- src/codegen/extensions/langchain/tools.py | 86 +++++++- src/codegen/extensions/linear/__init__.py | 3 + .../extensions/linear/linear_client.py | 196 ++++++++++++++++++ src/codegen/extensions/tools/__init__.py | 11 + src/codegen/extensions/tools/linear_tools.py | 39 ++++ tests/integration/extension/test_linear.py | 50 +++++ 10 files changed, 387 insertions(+), 5 deletions(-) create mode 100644 src/codegen/extensions/linear/__init__.py create mode 100644 src/codegen/extensions/linear/linear_client.py create mode 100644 src/codegen/extensions/tools/linear_tools.py create mode 100644 tests/integration/extension/test_linear.py diff --git a/pyproject.toml b/pyproject.toml index e477927bd..9691e960d 100644 --- a/pyproject.toml +++ b/pyproject.toml @@ -70,6 +70,7 @@ dependencies = [ "numpy>=2.2.2", "mcp[cli]", "neo4j", + "modal>=0.73.45", ] license = { text = "Apache-2.0" } diff --git a/src/codegen/extensions/events/app.py b/src/codegen/extensions/events/app.py index d323c898f..696a48377 100644 --- a/src/codegen/extensions/events/app.py +++ b/src/codegen/extensions/events/app.py @@ -1,6 +1,6 @@ import logging -import modal +import modal # deptry: ignore from codegen.extensions.events.linear import Linear diff --git a/src/codegen/extensions/events/interface.py b/src/codegen/extensions/events/interface.py index e5d780fae..998afa9d2 100644 --- a/src/codegen/extensions/events/interface.py +++ b/src/codegen/extensions/events/interface.py @@ -1,6 +1,6 @@ from typing import Protocol -import modal +import modal # deptry: ignore class EventHandlerManagerProtocol(Protocol): diff --git a/src/codegen/extensions/events/linear.py b/src/codegen/extensions/events/linear.py index c9a14da1a..278c2c459 100644 --- a/src/codegen/extensions/events/linear.py +++ b/src/codegen/extensions/events/linear.py @@ -3,7 +3,7 @@ import os from typing import Callable -import modal +import modal # deptry: ignore from anthropic import BaseModel from codegen.extensions.clients.linear import LinearClient diff --git a/src/codegen/extensions/langchain/tools.py b/src/codegen/extensions/langchain/tools.py index 6299cc556..cbce0c1cc 100644 --- a/src/codegen/extensions/langchain/tools.py +++ b/src/codegen/extensions/langchain/tools.py @@ -7,6 +7,12 @@ from pydantic import BaseModel, Field from codegen import Codebase +from codegen.extensions.linear.linear_client import LinearClient +from codegen.extensions.tools.linear_tools import ( + linear_comment_on_issue_tool, + linear_get_issue_comments_tool, + linear_get_issue_tool, +) from ..tools import ( commit, @@ -184,7 +190,10 @@ class RevealSymbolInput(BaseModel): symbol_name: str = Field(..., description="Name of the symbol to analyze") degree: int = Field(default=1, description="How many degrees of separation to traverse") - max_tokens: Optional[int] = Field(default=None, description="Optional maximum number of tokens for all source code combined") + max_tokens: Optional[int] = Field( + default=None, + description="Optional maximum number of tokens for all source code combined", + ) collect_dependencies: bool = Field(default=True, description="Whether to collect dependencies") collect_usages: bool = Field(default=True, description="Whether to collect usages") @@ -281,7 +290,10 @@ class MoveSymbolInput(BaseModel): source_file: str = Field(..., description="Path to the file containing the symbol") symbol_name: str = Field(..., description="Name of the symbol to move") target_file: str = Field(..., description="Path to the destination file") - strategy: Literal["update_all_imports", "add_back_edge"] = Field(default="update_all_imports", description="Strategy for handling imports: 'update_all_imports' (default) or 'add_back_edge'") + strategy: Literal["update_all_imports", "add_back_edge"] = Field( + default="update_all_imports", + description="Strategy for handling imports: 'update_all_imports' (default) or 'add_back_edge'", + ) include_dependencies: bool = Field(default=True, description="Whether to move dependencies along with the symbol") @@ -453,6 +465,73 @@ def _run( return json.dumps(result, indent=2) +class LinearGetIssueInput(BaseModel): + """Input for getting a Linear issue.""" + + issue_id: str = Field(..., description="ID of the Linear issue to retrieve") + + +class LinearGetIssueTool(BaseTool): + """Tool for getting Linear issue details.""" + + name: ClassVar[str] = "linear_get_issue" + description: ClassVar[str] = "Get details of a Linear issue by its ID" + args_schema: ClassVar[type[BaseModel]] = LinearGetIssueInput + client: LinearClient = Field(exclude=True) + + def __init__(self, client: LinearClient) -> None: + super().__init__(client=client) + + def _run(self, issue_id: str) -> str: + result = linear_get_issue_tool(self.client, issue_id) + return json.dumps(result, indent=2) + + +class LinearGetIssueCommentsInput(BaseModel): + """Input for getting Linear issue comments.""" + + issue_id: str = Field(..., description="ID of the Linear issue to get comments for") + + +class LinearGetIssueCommentsTool(BaseTool): + """Tool for getting Linear issue comments.""" + + name: ClassVar[str] = "linear_get_issue_comments" + description: ClassVar[str] = "Get all comments on a Linear issue" + args_schema: ClassVar[type[BaseModel]] = LinearGetIssueCommentsInput + client: LinearClient = Field(exclude=True) + + def __init__(self, client: LinearClient) -> None: + super().__init__(client=client) + + def _run(self, issue_id: str) -> str: + result = linear_get_issue_comments_tool(self.client, issue_id) + return json.dumps(result, indent=2) + + +class LinearCommentOnIssueInput(BaseModel): + """Input for commenting on a Linear issue.""" + + issue_id: str = Field(..., description="ID of the Linear issue to comment on") + body: str = Field(..., description="The comment text") + + +class LinearCommentOnIssueTool(BaseTool): + """Tool for commenting on Linear issues.""" + + name: ClassVar[str] = "linear_comment_on_issue" + description: ClassVar[str] = "Add a comment to a Linear issue" + args_schema: ClassVar[type[BaseModel]] = LinearCommentOnIssueInput + client: LinearClient = Field(exclude=True) + + def __init__(self, client: LinearClient) -> None: + super().__init__(client=client) + + def _run(self, issue_id: str, body: str) -> str: + result = linear_comment_on_issue_tool(self.client, issue_id, body) + return json.dumps(result, indent=2) + + def get_workspace_tools(codebase: Codebase) -> list["BaseTool"]: """Get all workspace tools initialized with a codebase. @@ -479,4 +558,7 @@ def get_workspace_tools(codebase: Codebase) -> list["BaseTool"]: SemanticEditTool(codebase), SemanticSearchTool(codebase), ViewFileTool(codebase), + LinearGetIssueTool(codebase), + LinearGetIssueCommentsTool(codebase), + LinearCommentOnIssueTool(codebase), ] diff --git a/src/codegen/extensions/linear/__init__.py b/src/codegen/extensions/linear/__init__.py new file mode 100644 index 000000000..8ba060245 --- /dev/null +++ b/src/codegen/extensions/linear/__init__.py @@ -0,0 +1,3 @@ +from .linear_client import LinearClient + +__all__ = ["LinearClient"] diff --git a/src/codegen/extensions/linear/linear_client.py b/src/codegen/extensions/linear/linear_client.py new file mode 100644 index 000000000..ef0e1b96a --- /dev/null +++ b/src/codegen/extensions/linear/linear_client.py @@ -0,0 +1,196 @@ +import json +import logging +import os +from typing import Optional + +import requests +from pydantic import BaseModel + +logger = logging.getLogger(__name__) + + +# --- TYPES + + +class LinearUser(BaseModel): + id: str + name: str + + +class LinearComment(BaseModel): + id: str + body: str + user: LinearUser | None = None + + +class LinearIssue(BaseModel): + id: str + title: str + description: str | None = None + + +class LinearClient: + api_headers: dict + api_endpoint = "https://api.linear.app/graphql" + + def __init__(self, access_token: Optional[str] = None): + if not access_token: + access_token = os.getenv("LINEAR_ACCESS_TOKEN") + if not access_token: + msg = "access_token is required" + raise ValueError(msg) + self.access_token = access_token + self.api_headers = { + "Content-Type": "application/json", + "Authorization": self.access_token, + } + + def get_issue(self, issue_id: str) -> LinearIssue: + query = """ + query getIssue($issueId: String!) { + issue(id: $issueId) { + id + title + description + } + } + """ + variables = {"issueId": issue_id} + response = requests.post(self.api_endpoint, headers=self.api_headers, json={"query": query, "variables": variables}) + data = response.json() + issue_data = data["data"]["issue"] + return LinearIssue(id=issue_data["id"], title=issue_data["title"], description=issue_data["description"]) + + def get_issue_comments(self, issue_id: str) -> list[LinearComment]: + query = """ + query getIssueComments($issueId: String!) { + issue(id: $issueId) { + comments { + nodes { + id + body + user { + id + name + } + } + + } + } + } + """ + variables = {"issueId": issue_id} + response = requests.post(self.api_endpoint, headers=self.api_headers, json={"query": query, "variables": variables}) + data = response.json() + comments = data["data"]["issue"]["comments"]["nodes"] + + # Parse comments into list of LinearComment objects + parsed_comments = [] + for comment in comments: + user = comment.get("user", None) + parsed_comment = LinearComment(id=comment["id"], body=comment["body"], user=LinearUser(id=user.get("id"), name=user.get("name")) if user else None) + parsed_comments.append(parsed_comment) + + # Convert raw comments to LinearComment objects + return parsed_comments + + def comment_on_issue(self, issue_id: str, body: str) -> dict: + """issue_id is our internal issue ID""" + query = """mutation makeComment($issueId: String!, $body: String!) { + commentCreate(input: {issueId: $issueId, body: $body}) { + comment { + id + body + url + user { + id + name + } + } + } + } + """ + variables = {"issueId": issue_id, "body": body} + response = requests.post( + self.api_endpoint, + headers=self.api_headers, + data=json.dumps({"query": query, "variables": variables}), + ) + data = response.json() + try: + comment_data = data["data"]["commentCreate"]["comment"] + + return comment_data + except Exception as e: + msg = f"Error creating comment\n{data}\n{e}" + raise Exception(msg) + + def register_webhook(self, webhook_url: str, team_id: str, secret: str, enabled: bool, resource_types: list[str]): + mutation = """ + mutation createWebhook($input: WebhookCreateInput!) { + webhookCreate(input: $input) { + success + webhook { + id + enabled + } + } + } + """ + + variables = { + "input": { + "url": webhook_url, + "teamId": team_id, + "resourceTypes": resource_types, + "enabled": enabled, + "secret": secret, + } + } + + response = requests.post(self.api_endpoint, headers=self.api_headers, json={"query": mutation, "variables": variables}) + body = response.json() + return body + + def search_issues(self, query: str, limit: int = 10) -> list[LinearIssue]: + """Search for issues using a query string. + + Args: + query: Search query string + limit: Maximum number of issues to return (default: 10) + + Returns: + List of LinearIssue objects matching the search query + """ + graphql_query = """ + query searchIssues($query: String!, $limit: Int!) { + issueSearch(query: $query, first: $limit) { + nodes { + id + title + description + } + } + } + """ + variables = {"query": query, "limit": limit} + response = requests.post( + self.api_endpoint, + headers=self.api_headers, + json={"query": graphql_query, "variables": variables}, + ) + data = response.json() + + try: + issues_data = data["data"]["issueSearch"]["nodes"] + return [ + LinearIssue( + id=issue["id"], + title=issue["title"], + description=issue["description"], + ) + for issue in issues_data + ] + except Exception as e: + msg = f"Error searching issues\n{data}\n{e}" + raise Exception(msg) diff --git a/src/codegen/extensions/tools/__init__.py b/src/codegen/extensions/tools/__init__.py index 74f8ba83c..06ededaf8 100644 --- a/src/codegen/extensions/tools/__init__.py +++ b/src/codegen/extensions/tools/__init__.py @@ -8,6 +8,12 @@ from .github.create_pr_comment import create_pr_comment from .github.create_pr_review_comment import create_pr_review_comment from .github.view_pr import view_pr +from .linear_tools import ( + linear_comment_on_issue_tool, + linear_get_issue_comments_tool, + linear_get_issue_tool, + linear_register_webhook_tool, +) from .list_directory import list_directory from .move_symbol import move_symbol from .rename_file import rename_file @@ -27,6 +33,11 @@ "create_pr_review_comment", "delete_file", "edit_file", + # Linear operations + "linear_comment_on_issue_tool", + "linear_get_issue_comments_tool", + "linear_get_issue_tool", + "linear_register_webhook_tool", "list_directory", # Symbol operations "move_symbol", diff --git a/src/codegen/extensions/tools/linear_tools.py b/src/codegen/extensions/tools/linear_tools.py new file mode 100644 index 000000000..9bc02f5fe --- /dev/null +++ b/src/codegen/extensions/tools/linear_tools.py @@ -0,0 +1,39 @@ +from typing import Any + +from codegen.extensions.linear.linear_client import LinearClient + + +def linear_get_issue_tool(client: LinearClient, issue_id: str) -> dict[str, Any]: + """Get an issue by its ID.""" + try: + issue = client.get_issue(issue_id) + return {"status": "success", "issue": issue.dict()} + except Exception as e: + return {"error": f"Failed to get issue: {e!s}"} + + +def linear_get_issue_comments_tool(client: LinearClient, issue_id: str) -> dict[str, Any]: + """Get comments for a specific issue.""" + try: + comments = client.get_issue_comments(issue_id) + return {"status": "success", "comments": [comment.dict() for comment in comments]} + except Exception as e: + return {"error": f"Failed to get issue comments: {e!s}"} + + +def linear_comment_on_issue_tool(client: LinearClient, issue_id: str, body: str) -> dict[str, Any]: + """Add a comment to an issue.""" + try: + comment = client.comment_on_issue(issue_id, body) + return {"status": "success", "comment": comment} + except Exception as e: + return {"error": f"Failed to comment on issue: {e!s}"} + + +def linear_register_webhook_tool(client: LinearClient, webhook_url: str, team_id: str, secret: str, enabled: bool, resource_types: list[str]) -> dict[str, Any]: + """Register a webhook with Linear.""" + try: + response = client.register_webhook(webhook_url, team_id, secret, enabled, resource_types) + return {"status": "success", "response": response} + except Exception as e: + return {"error": f"Failed to register webhook: {e!s}"} diff --git a/tests/integration/extension/test_linear.py b/tests/integration/extension/test_linear.py new file mode 100644 index 000000000..c6eb3606d --- /dev/null +++ b/tests/integration/extension/test_linear.py @@ -0,0 +1,50 @@ +"""Tests for Linear tools.""" + +import os + +import pytest + +from codegen.extensions.linear.linear_client import LinearClient +from codegen.extensions.tools.linear_tools import ( + linear_comment_on_issue_tool, + linear_get_issue_comments_tool, + linear_get_issue_tool, +) + + +@pytest.fixture +def client() -> LinearClient: + """Create a Linear client for testing.""" + token = os.getenv("LINEAR_ACCESS_TOKEN") + if not token: + pytest.skip("LINEAR_ACCESS_TOKEN environment variable not set") + return LinearClient(token) + + +def test_linear_get_issue(client: LinearClient) -> None: + """Test getting an issue from Linear.""" + # Link to issue: https://linear.app/codegen-sh/issue/CG-10775/read-file-and-reveal-symbol-tool-size-limits + issue = linear_get_issue_tool(client, "CG-10775") + assert issue["status"] == "success" + assert issue["issue"]["id"] == "d5a7d6db-e20d-4d67-98f8-acedef6d3536" + + +def test_linear_get_issue_comments(client: LinearClient) -> None: + """Test getting comments for an issue from Linear.""" + comments = linear_get_issue_comments_tool(client, "CG-10775") + assert comments["status"] == "success" + assert len(comments["comments"]) > 1 + + +def test_linear_comment_on_issue(client: LinearClient) -> None: + """Test commenting on a Linear issue.""" + test_comment = "Test comment from automated testing" + result = linear_comment_on_issue_tool(client, "CG-10775", test_comment) + assert result["status"] == "success" + + +def test_search_issues(client: LinearClient) -> None: + """Test searching for issues in Linear.""" + issues = client.search_issues("REVEAL_SYMBOL") + assert issues["status"] == "success" + assert len(issues["issues"]) > 0 From e23d8ac98825a2ab7e068d0e06f79345718c0d7a Mon Sep 17 00:00:00 2001 From: Jay Hack Date: Fri, 14 Feb 2025 16:53:21 -0800 Subject: [PATCH 07/33] feat: search_linear and create_linear tools (#508) --- src/codegen/extensions/langchain/tools.py | 68 +++++++++++ .../extensions/linear/linear_client.py | 113 +++++++++++++++++- src/codegen/extensions/tools/linear_tools.py | 27 +++++ tests/integration/extension/test_linear.py | 49 +++++++- 4 files changed, 254 insertions(+), 3 deletions(-) diff --git a/src/codegen/extensions/langchain/tools.py b/src/codegen/extensions/langchain/tools.py index cbce0c1cc..8ab951b2d 100644 --- a/src/codegen/extensions/langchain/tools.py +++ b/src/codegen/extensions/langchain/tools.py @@ -10,8 +10,11 @@ from codegen.extensions.linear.linear_client import LinearClient from codegen.extensions.tools.linear_tools import ( linear_comment_on_issue_tool, + linear_create_issue_tool, linear_get_issue_comments_tool, linear_get_issue_tool, + linear_get_teams_tool, + linear_search_issues_tool, ) from ..tools import ( @@ -532,6 +535,68 @@ def _run(self, issue_id: str, body: str) -> str: return json.dumps(result, indent=2) +class LinearSearchIssuesInput(BaseModel): + """Input for searching Linear issues.""" + + query: str = Field(..., description="Search query string") + limit: int = Field(default=10, description="Maximum number of issues to return") + + +class LinearSearchIssuesTool(BaseTool): + """Tool for searching Linear issues.""" + + name: ClassVar[str] = "linear_search_issues" + description: ClassVar[str] = "Search for Linear issues using a query string" + args_schema: ClassVar[type[BaseModel]] = LinearSearchIssuesInput + client: LinearClient = Field(exclude=True) + + def __init__(self, client: LinearClient) -> None: + super().__init__(client=client) + + def _run(self, query: str, limit: int = 10) -> str: + result = linear_search_issues_tool(self.client, query, limit) + return json.dumps(result, indent=2) + + +class LinearCreateIssueInput(BaseModel): + """Input for creating a Linear issue.""" + + title: str = Field(..., description="Title of the issue") + description: str | None = Field(None, description="Optional description of the issue") + team_id: str | None = Field(None, description="Optional team ID. If not provided, uses the default team_id (recommended)") + + +class LinearCreateIssueTool(BaseTool): + """Tool for creating Linear issues.""" + + name: ClassVar[str] = "linear_create_issue" + description: ClassVar[str] = "Create a new Linear issue" + args_schema: ClassVar[type[BaseModel]] = LinearCreateIssueInput + client: LinearClient = Field(exclude=True) + + def __init__(self, client: LinearClient) -> None: + super().__init__(client=client) + + def _run(self, title: str, description: str | None = None, team_id: str | None = None) -> str: + result = linear_create_issue_tool(self.client, title, description, team_id) + return json.dumps(result, indent=2) + + +class LinearGetTeamsTool(BaseTool): + """Tool for getting Linear teams.""" + + name: ClassVar[str] = "linear_get_teams" + description: ClassVar[str] = "Get all Linear teams the authenticated user has access to" + client: LinearClient = Field(exclude=True) + + def __init__(self, client: LinearClient) -> None: + super().__init__(client=client) + + def _run(self) -> str: + result = linear_get_teams_tool(self.client) + return json.dumps(result, indent=2) + + def get_workspace_tools(codebase: Codebase) -> list["BaseTool"]: """Get all workspace tools initialized with a codebase. @@ -561,4 +626,7 @@ def get_workspace_tools(codebase: Codebase) -> list["BaseTool"]: LinearGetIssueTool(codebase), LinearGetIssueCommentsTool(codebase), LinearCommentOnIssueTool(codebase), + LinearSearchIssuesTool(codebase), + LinearCreateIssueTool(codebase), + LinearGetTeamsTool(codebase), ] diff --git a/src/codegen/extensions/linear/linear_client.py b/src/codegen/extensions/linear/linear_client.py index ef0e1b96a..e27867dca 100644 --- a/src/codegen/extensions/linear/linear_client.py +++ b/src/codegen/extensions/linear/linear_client.py @@ -17,6 +17,14 @@ class LinearUser(BaseModel): name: str +class LinearTeam(BaseModel): + """Represents a Linear team.""" + + id: str + name: str + key: str + + class LinearComment(BaseModel): id: str body: str @@ -33,13 +41,18 @@ class LinearClient: api_headers: dict api_endpoint = "https://api.linear.app/graphql" - def __init__(self, access_token: Optional[str] = None): + def __init__(self, access_token: Optional[str] = None, team_id: Optional[str] = None): if not access_token: access_token = os.getenv("LINEAR_ACCESS_TOKEN") if not access_token: msg = "access_token is required" raise ValueError(msg) self.access_token = access_token + + if not team_id: + team_id = os.getenv("LINEAR_TEAM_ID") + self.team_id = team_id + self.api_headers = { "Content-Type": "application/json", "Authorization": self.access_token, @@ -194,3 +207,101 @@ def search_issues(self, query: str, limit: int = 10) -> list[LinearIssue]: except Exception as e: msg = f"Error searching issues\n{data}\n{e}" raise Exception(msg) + + def create_issue(self, title: str, description: str | None = None, team_id: str | None = None) -> LinearIssue: + """Create a new issue. + + Args: + title: Title of the issue + description: Optional description of the issue + team_id: Optional team ID. If not provided, uses the client's configured team_id + + Returns: + The created LinearIssue object + + Raises: + ValueError: If no team_id is provided or configured + """ + if not team_id: + team_id = self.team_id + if not team_id: + msg = "team_id must be provided either during client initialization or in the create_issue call" + raise ValueError(msg) + + mutation = """ + mutation createIssue($input: IssueCreateInput!) { + issueCreate(input: $input) { + success + issue { + id + title + description + } + } + } + """ + + variables = { + "input": { + "teamId": team_id, + "title": title, + "description": description, + } + } + + response = requests.post( + self.api_endpoint, + headers=self.api_headers, + json={"query": mutation, "variables": variables}, + ) + data = response.json() + + try: + issue_data = data["data"]["issueCreate"]["issue"] + return LinearIssue( + id=issue_data["id"], + title=issue_data["title"], + description=issue_data["description"], + ) + except Exception as e: + msg = f"Error creating issue\n{data}\n{e}" + raise Exception(msg) + + def get_teams(self) -> list[LinearTeam]: + """Get all teams the authenticated user has access to. + + Returns: + List of LinearTeam objects + """ + query = """ + query { + teams { + nodes { + id + name + key + } + } + } + """ + + response = requests.post( + self.api_endpoint, + headers=self.api_headers, + json={"query": query}, + ) + data = response.json() + + try: + teams_data = data["data"]["teams"]["nodes"] + return [ + LinearTeam( + id=team["id"], + name=team["name"], + key=team["key"], + ) + for team in teams_data + ] + except Exception as e: + msg = f"Error getting teams\n{data}\n{e}" + raise Exception(msg) diff --git a/src/codegen/extensions/tools/linear_tools.py b/src/codegen/extensions/tools/linear_tools.py index 9bc02f5fe..c15cb5d10 100644 --- a/src/codegen/extensions/tools/linear_tools.py +++ b/src/codegen/extensions/tools/linear_tools.py @@ -37,3 +37,30 @@ def linear_register_webhook_tool(client: LinearClient, webhook_url: str, team_id return {"status": "success", "response": response} except Exception as e: return {"error": f"Failed to register webhook: {e!s}"} + + +def linear_search_issues_tool(client: LinearClient, query: str, limit: int = 10) -> dict[str, Any]: + """Search for issues using a query string.""" + try: + issues = client.search_issues(query, limit) + return {"status": "success", "issues": [issue.dict() for issue in issues]} + except Exception as e: + return {"error": f"Failed to search issues: {e!s}"} + + +def linear_create_issue_tool(client: LinearClient, title: str, description: str | None = None, team_id: str | None = None) -> dict[str, Any]: + """Create a new issue.""" + try: + issue = client.create_issue(title, description, team_id) + return {"status": "success", "issue": issue.dict()} + except Exception as e: + return {"error": f"Failed to create issue: {e!s}"} + + +def linear_get_teams_tool(client: LinearClient) -> dict[str, Any]: + """Get all teams the authenticated user has access to.""" + try: + teams = client.get_teams() + return {"status": "success", "teams": [team.dict() for team in teams]} + except Exception as e: + return {"error": f"Failed to get teams: {e!s}"} diff --git a/tests/integration/extension/test_linear.py b/tests/integration/extension/test_linear.py index c6eb3606d..5a758f2cb 100644 --- a/tests/integration/extension/test_linear.py +++ b/tests/integration/extension/test_linear.py @@ -7,8 +7,11 @@ from codegen.extensions.linear.linear_client import LinearClient from codegen.extensions.tools.linear_tools import ( linear_comment_on_issue_tool, + linear_create_issue_tool, linear_get_issue_comments_tool, linear_get_issue_tool, + linear_get_teams_tool, + linear_search_issues_tool, ) @@ -18,7 +21,10 @@ def client() -> LinearClient: token = os.getenv("LINEAR_ACCESS_TOKEN") if not token: pytest.skip("LINEAR_ACCESS_TOKEN environment variable not set") - return LinearClient(token) + team_id = os.getenv("LINEAR_TEAM_ID") + if not team_id: + pytest.skip("LINEAR_TEAM_ID environment variable not set") + return LinearClient(token, team_id) def test_linear_get_issue(client: LinearClient) -> None: @@ -45,6 +51,45 @@ def test_linear_comment_on_issue(client: LinearClient) -> None: def test_search_issues(client: LinearClient) -> None: """Test searching for issues in Linear.""" - issues = client.search_issues("REVEAL_SYMBOL") + issues = linear_search_issues_tool(client, "REVEAL_SYMBOL") assert issues["status"] == "success" assert len(issues["issues"]) > 0 + + +def test_create_issue(client: LinearClient) -> None: + """Test creating an issue in Linear.""" + # Test creating an issue with explicit team_id + title = "Test Issue - Automated Testing (Explicit Team)" + description = "This is a test issue created by automated testing with explicit team_id" + + issue = client.create_issue(title, description) + assert issue.title == title + assert issue.description == description + + # Test creating an issue using default team_id from environment + title2 = "Test Issue - Automated Testing (Default Team)" + description2 = "This is a test issue created by automated testing with default team_id" + + issue2 = client.create_issue(title2, description2) + assert issue2.title == title2 + assert issue2.description == description2 + + # Test the tool wrapper with default team_id + result = linear_create_issue_tool(client, "Test Tool Issue", "Test description from tool") + assert result["status"] == "success" + assert result["issue"]["title"] == "Test Tool Issue" + assert result["issue"]["description"] == "Test description from tool" + + +def test_get_teams(client: LinearClient) -> None: + """Test getting teams from Linear.""" + result = linear_get_teams_tool(client) + assert result["status"] == "success" + assert len(result["teams"]) > 0 + + # Verify team structure + team = result["teams"][0] + print(result) + assert "id" in team + assert "name" in team + assert "key" in team From ebbfc14ac84a14b8574ace648e278175a8a3a947 Mon Sep 17 00:00:00 2001 From: Jay Hack Date: Fri, 14 Feb 2025 19:43:16 -0800 Subject: [PATCH 08/33] chore: better tools arrangement (#509) --- src/codegen/extensions/langchain/agent.py | 16 +++--- src/codegen/extensions/langchain/tools.py | 56 ++++++++++++------- src/codegen/extensions/tools/__init__.py | 2 +- .../extensions/tools/github/__init__.py | 11 ++++ .../extensions/tools/github/view_pr.py | 2 +- .../extensions/tools/linear/__init__.py | 19 +++++++ .../{linear_tools.py => linear/linear.py} | 0 tests/integration/__init__.py | 0 tests/integration/extension/__init__.py | 0 tests/integration/extension/test_github.py | 26 +++++++++ tests/integration/extension/test_linear.py | 2 +- 11 files changed, 104 insertions(+), 30 deletions(-) create mode 100644 src/codegen/extensions/tools/github/__init__.py create mode 100644 src/codegen/extensions/tools/linear/__init__.py rename src/codegen/extensions/tools/{linear_tools.py => linear/linear.py} (100%) create mode 100644 tests/integration/__init__.py create mode 100644 tests/integration/extension/__init__.py create mode 100644 tests/integration/extension/test_github.py diff --git a/src/codegen/extensions/langchain/agent.py b/src/codegen/extensions/langchain/agent.py index 8909e02d7..22964c5ac 100644 --- a/src/codegen/extensions/langchain/agent.py +++ b/src/codegen/extensions/langchain/agent.py @@ -13,12 +13,12 @@ from .tools import ( CommitTool, CreateFileTool, - CreatePRCommentTool, - CreatePRReviewCommentTool, - CreatePRTool, DeleteFileTool, EditFileTool, - GetPRcontentsTool, + GithubCreatePRCommentTool, + GithubCreatePRReviewCommentTool, + GithubCreatePRTool, + GithubViewPRTool, ListDirectoryTool, MoveSymbolTool, RenameFileTool, @@ -68,10 +68,10 @@ def create_codebase_agent( SemanticEditTool(codebase), SemanticSearchTool(codebase), CommitTool(codebase), - CreatePRTool(codebase), - GetPRcontentsTool(codebase), - CreatePRCommentTool(codebase), - CreatePRReviewCommentTool(codebase), + GithubCreatePRTool(codebase), + GithubViewPRTool(codebase), + GithubCreatePRCommentTool(codebase), + GithubCreatePRReviewCommentTool(codebase), ] # Get the prompt to use diff --git a/src/codegen/extensions/langchain/tools.py b/src/codegen/extensions/langchain/tools.py index 8ab951b2d..2aa76f25d 100644 --- a/src/codegen/extensions/langchain/tools.py +++ b/src/codegen/extensions/langchain/tools.py @@ -8,7 +8,7 @@ from codegen import Codebase from codegen.extensions.linear.linear_client import LinearClient -from codegen.extensions.tools.linear_tools import ( +from codegen.extensions.tools.linear.linear import ( linear_comment_on_issue_tool, linear_create_issue_tool, linear_get_issue_comments_tool, @@ -354,19 +354,24 @@ def _run(self, query: str, k: int = 5, preview_length: int = 200) -> str: return json.dumps(result, indent=2) -class CreatePRInput(BaseModel): +######################################################################################################################## +# GITHUB +######################################################################################################################## + + +class GithubCreatePRInput(BaseModel): """Input for creating a PR""" title: str = Field(..., description="The title of the PR") body: str = Field(..., description="The body of the PR") -class CreatePRTool(BaseTool): +class GithubCreatePRTool(BaseTool): """Tool for creating a PR.""" name: ClassVar[str] = "create_pr" description: ClassVar[str] = "Create a PR for the current branch" - args_schema: ClassVar[type[BaseModel]] = CreatePRInput + args_schema: ClassVar[type[BaseModel]] = GithubCreatePRInput codebase: Codebase = Field(exclude=True) def __init__(self, codebase: Codebase) -> None: @@ -377,18 +382,18 @@ def _run(self, title: str, body: str) -> str: return json.dumps(result, indent=2) -class GetPRContentsInput(BaseModel): +class GithubViewPRInput(BaseModel): """Input for getting PR contents.""" pr_id: int = Field(..., description="Number of the PR to get the contents for") -class GetPRcontentsTool(BaseTool): +class GithubViewPRTool(BaseTool): """Tool for getting PR data.""" - name: ClassVar[str] = "get_pr_contents" - description: ClassVar[str] = "Get the diff and modified symbols of a PR along with the dependencies of the modified symbols" - args_schema: ClassVar[type[BaseModel]] = GetPRContentsInput + name: ClassVar[str] = "view_pr" + description: ClassVar[str] = "View the diff and associated context for a pull request" + args_schema: ClassVar[type[BaseModel]] = GithubViewPRInput codebase: Codebase = Field(exclude=True) def __init__(self, codebase: Codebase) -> None: @@ -399,19 +404,19 @@ def _run(self, pr_id: int) -> str: return json.dumps(result, indent=2) -class CreatePRCommentInput(BaseModel): +class GithubCreatePRCommentInput(BaseModel): """Input for creating a PR comment""" pr_number: int = Field(..., description="The PR number to comment on") body: str = Field(..., description="The comment text") -class CreatePRCommentTool(BaseTool): +class GithubCreatePRCommentTool(BaseTool): """Tool for creating a general PR comment.""" name: ClassVar[str] = "create_pr_comment" description: ClassVar[str] = "Create a general comment on a pull request" - args_schema: ClassVar[type[BaseModel]] = CreatePRCommentInput + args_schema: ClassVar[type[BaseModel]] = GithubCreatePRCommentInput codebase: Codebase = Field(exclude=True) def __init__(self, codebase: Codebase) -> None: @@ -422,7 +427,7 @@ def _run(self, pr_number: int, body: str) -> str: return json.dumps(result, indent=2) -class CreatePRReviewCommentInput(BaseModel): +class GithubCreatePRReviewCommentInput(BaseModel): """Input for creating an inline PR review comment""" pr_number: int = Field(..., description="The PR number to comment on") @@ -434,12 +439,12 @@ class CreatePRReviewCommentInput(BaseModel): start_line: int | None = Field(None, description="For multi-line comments, the starting line") -class CreatePRReviewCommentTool(BaseTool): +class GithubCreatePRReviewCommentTool(BaseTool): """Tool for creating inline PR review comments.""" name: ClassVar[str] = "create_pr_review_comment" description: ClassVar[str] = "Create an inline review comment on a specific line in a pull request" - args_schema: ClassVar[type[BaseModel]] = CreatePRReviewCommentInput + args_schema: ClassVar[type[BaseModel]] = GithubCreatePRReviewCommentInput codebase: Codebase = Field(exclude=True) def __init__(self, codebase: Codebase) -> None: @@ -468,6 +473,11 @@ def _run( return json.dumps(result, indent=2) +######################################################################################################################## +# LINEAR +######################################################################################################################## + + class LinearGetIssueInput(BaseModel): """Input for getting a Linear issue.""" @@ -597,6 +607,11 @@ def _run(self) -> str: return json.dumps(result, indent=2) +######################################################################################################################## +# EXPORT +######################################################################################################################## + + def get_workspace_tools(codebase: Codebase) -> list["BaseTool"]: """Get all workspace tools initialized with a codebase. @@ -609,12 +624,9 @@ def get_workspace_tools(codebase: Codebase) -> list["BaseTool"]: return [ CommitTool(codebase), CreateFileTool(codebase), - CreatePRTool(codebase), - CreatePRCommentTool(codebase), - CreatePRReviewCommentTool(codebase), DeleteFileTool(codebase), EditFileTool(codebase), - GetPRcontentsTool(codebase), + GithubViewPRTool(codebase), ListDirectoryTool(codebase), MoveSymbolTool(codebase), RenameFileTool(codebase), @@ -623,6 +635,12 @@ def get_workspace_tools(codebase: Codebase) -> list["BaseTool"]: SemanticEditTool(codebase), SemanticSearchTool(codebase), ViewFileTool(codebase), + # Github + GithubCreatePRTool(codebase), + GithubCreatePRCommentTool(codebase), + GithubCreatePRReviewCommentTool(codebase), + GithubViewPRTool(codebase), + # Linear LinearGetIssueTool(codebase), LinearGetIssueCommentsTool(codebase), LinearCommentOnIssueTool(codebase), diff --git a/src/codegen/extensions/tools/__init__.py b/src/codegen/extensions/tools/__init__.py index 06ededaf8..70375f9b8 100644 --- a/src/codegen/extensions/tools/__init__.py +++ b/src/codegen/extensions/tools/__init__.py @@ -8,7 +8,7 @@ from .github.create_pr_comment import create_pr_comment from .github.create_pr_review_comment import create_pr_review_comment from .github.view_pr import view_pr -from .linear_tools import ( +from .linear import ( linear_comment_on_issue_tool, linear_get_issue_comments_tool, linear_get_issue_tool, diff --git a/src/codegen/extensions/tools/github/__init__.py b/src/codegen/extensions/tools/github/__init__.py new file mode 100644 index 000000000..a59669dd2 --- /dev/null +++ b/src/codegen/extensions/tools/github/__init__.py @@ -0,0 +1,11 @@ +from .create_pr import create_pr +from .create_pr_comment import create_pr_comment +from .create_pr_review_comment import create_pr_review_comment +from .view_pr import view_pr + +__all__ = [ + "create_pr", + "create_pr_comment", + "create_pr_review_comment", + "view_pr", +] diff --git a/src/codegen/extensions/tools/github/view_pr.py b/src/codegen/extensions/tools/github/view_pr.py index 13b90a0f5..c077b56a1 100644 --- a/src/codegen/extensions/tools/github/view_pr.py +++ b/src/codegen/extensions/tools/github/view_pr.py @@ -18,4 +18,4 @@ def view_pr(codebase: Codebase, pr_id: int) -> dict[str, Any]: modified_symbols, patch = codebase.get_modified_symbols_in_pr(pr_id) # Convert modified_symbols set to list for JSON serialization - return {"status": "success", "modified_symbols": list(modified_symbols), "patch": patch} + return {"status": "success", "patch": patch} diff --git a/src/codegen/extensions/tools/linear/__init__.py b/src/codegen/extensions/tools/linear/__init__.py new file mode 100644 index 000000000..8d15e1b72 --- /dev/null +++ b/src/codegen/extensions/tools/linear/__init__.py @@ -0,0 +1,19 @@ +from .linear import ( + linear_comment_on_issue_tool, + linear_create_issue_tool, + linear_get_issue_comments_tool, + linear_get_issue_tool, + linear_get_teams_tool, + linear_register_webhook_tool, + linear_search_issues_tool, +) + +__all__ = [ + "linear_comment_on_issue_tool", + "linear_create_issue_tool", + "linear_get_issue_comments_tool", + "linear_get_issue_tool", + "linear_get_teams_tool", + "linear_register_webhook_tool", + "linear_search_issues_tool", +] diff --git a/src/codegen/extensions/tools/linear_tools.py b/src/codegen/extensions/tools/linear/linear.py similarity index 100% rename from src/codegen/extensions/tools/linear_tools.py rename to src/codegen/extensions/tools/linear/linear.py diff --git a/tests/integration/__init__.py b/tests/integration/__init__.py new file mode 100644 index 000000000..e69de29bb diff --git a/tests/integration/extension/__init__.py b/tests/integration/extension/__init__.py new file mode 100644 index 000000000..e69de29bb diff --git a/tests/integration/extension/test_github.py b/tests/integration/extension/test_github.py new file mode 100644 index 000000000..a7ced0a3e --- /dev/null +++ b/tests/integration/extension/test_github.py @@ -0,0 +1,26 @@ +"""Tests for Linear tools.""" + +import os + +import pytest + +from codegen import Codebase +from codegen.extensions.linear.linear_client import LinearClient +from codegen.extensions.tools.github import view_pr + + +@pytest.fixture +def client() -> LinearClient: + """Create a Linear client for testing.""" + token = os.getenv("CODEGEN_SECRETS__GITHUB_TOKEN") + if not token: + pytest.skip("CODEGEN_SECRETS__GITHUB_TOKEN environment variable not set") + codebase = Codebase.from_repo("codegen-sh/Kevin-s-Adventure-Game") + return codebase + + +def test_github_view_pr(client: LinearClient) -> None: + """Test getting an issue from Linear.""" + # Link to PR: https://github.com/codegen-sh/Kevin-s-Adventure-Game/pull/419 + pr = view_pr(client, 419) + print(pr) diff --git a/tests/integration/extension/test_linear.py b/tests/integration/extension/test_linear.py index 5a758f2cb..4d39c9788 100644 --- a/tests/integration/extension/test_linear.py +++ b/tests/integration/extension/test_linear.py @@ -5,7 +5,7 @@ import pytest from codegen.extensions.linear.linear_client import LinearClient -from codegen.extensions.tools.linear_tools import ( +from codegen.extensions.tools.linear.linear import ( linear_comment_on_issue_tool, linear_create_issue_tool, linear_get_issue_comments_tool, From 8581a9326c750af75ba0dbd5df302e8c1a0e5c9b Mon Sep 17 00:00:00 2001 From: Jay Hack Date: Fri, 14 Feb 2025 23:02:20 -0800 Subject: [PATCH 09/33] feat: BashCommandTool (#510) --- src/codegen/extensions/langchain/tools.py | 66 +++++++++- src/codegen/extensions/tools/bash.py | 151 ++++++++++++++++++++++ tests/integration/extension/test_bash.py | 90 +++++++++++++ 3 files changed, 306 insertions(+), 1 deletion(-) create mode 100644 src/codegen/extensions/tools/bash.py create mode 100644 tests/integration/extension/test_bash.py diff --git a/src/codegen/extensions/langchain/tools.py b/src/codegen/extensions/langchain/tools.py index 2aa76f25d..eae917789 100644 --- a/src/codegen/extensions/langchain/tools.py +++ b/src/codegen/extensions/langchain/tools.py @@ -1,13 +1,14 @@ """Langchain tools for workspace operations.""" import json -from typing import ClassVar, Literal, Optional +from typing import Callable, ClassVar, Literal, Optional from langchain.tools import BaseTool from pydantic import BaseModel, Field from codegen import Codebase from codegen.extensions.linear.linear_client import LinearClient +from codegen.extensions.tools.bash import run_bash_command from codegen.extensions.tools.linear.linear import ( linear_comment_on_issue_tool, linear_create_issue_tool, @@ -16,6 +17,7 @@ linear_get_teams_tool, linear_search_issues_tool, ) +from codegen.extensions.tools.link_annotation import add_links_to_message from ..tools import ( commit, @@ -354,6 +356,30 @@ def _run(self, query: str, k: int = 5, preview_length: int = 200) -> str: return json.dumps(result, indent=2) +######################################################################################################################## +# BASH +######################################################################################################################## + + +class RunBashCommandInput(BaseModel): + """Input for running a bash command.""" + + command: str = Field(..., description="The command to run") + is_background: bool = Field(default=False, description="Whether to run the command in the background") + + +class RunBashCommandTool(BaseTool): + """Tool for running bash commands.""" + + name: ClassVar[str] = "run_bash_command" + description: ClassVar[str] = "Run a bash command and return its output" + args_schema: ClassVar[type[BaseModel]] = RunBashCommandInput + + def _run(self, command: str, is_background: bool = False) -> str: + result = run_bash_command(command, is_background) + return json.dumps(result, indent=2) + + ######################################################################################################################## # GITHUB ######################################################################################################################## @@ -607,6 +633,43 @@ def _run(self) -> str: return json.dumps(result, indent=2) +######################################################################################################################## +# SLACK +######################################################################################################################## + + +class SlackSendMessageInput(BaseModel): + """Input for sending a message to Slack.""" + + content: str = Field(..., description="Message to send to Slack") + + +class SlackSendMessageTool(BaseTool): + """Tool for sending a message to Slack.""" + + name: ClassVar[str] = "send_slack_message" + description: ClassVar[str] = ( + "Send a message via Slack." + "Write symbol names (classes, functions, etc.) or full filepaths in single backticks and they will be auto-linked to the code." + "Use Slack-style markdown for other links." + ) + args_schema: ClassVar[type[BaseModel]] = SlackSendMessageInput + say: Callable[[str], None] = Field(exclude=True) + codebase: Codebase = Field(exclude=True) + + def __init__(self, codebase: Codebase, say: Callable[[str], None]) -> None: + super().__init__(say=say, codebase=codebase) + self.say = say + self.codebase = codebase + + def _run(self, content: str) -> str: + print("> Adding links to message") + content_formatted = add_links_to_message(content, self.codebase) + print("> Sending message to Slack") + self.say(content_formatted) + return "✅ Message sent successfully" + + ######################################################################################################################## # EXPORT ######################################################################################################################## @@ -631,6 +694,7 @@ def get_workspace_tools(codebase: Codebase) -> list["BaseTool"]: MoveSymbolTool(codebase), RenameFileTool(codebase), RevealSymbolTool(codebase), + RunBashCommandTool(), # Note: This tool doesn't need the codebase SearchTool(codebase), SemanticEditTool(codebase), SemanticSearchTool(codebase), diff --git a/src/codegen/extensions/tools/bash.py b/src/codegen/extensions/tools/bash.py new file mode 100644 index 000000000..0ebcaf855 --- /dev/null +++ b/src/codegen/extensions/tools/bash.py @@ -0,0 +1,151 @@ +"""Tools for running bash commands.""" + +import re +import shlex +import subprocess +from typing import Any + +# Whitelist of allowed commands and their flags +ALLOWED_COMMANDS = { + "ls": {"-l", "-a", "-h", "-t", "-r", "--color"}, + "cat": {"-n", "--number"}, + "head": {"-n"}, + "tail": {"-n", "-f"}, + "grep": {"-i", "-r", "-n", "-l", "-v", "--color"}, + "find": {"-name", "-type", "-size", "-mtime"}, + "pwd": set(), + "echo": set(), # echo is safe with any args + "ps": {"-ef", "-aux"}, + "df": {"-h"}, + "du": {"-h", "-s"}, + "wc": {"-l", "-w", "-c"}, +} + + +def validate_command(command: str) -> tuple[bool, str]: + """Validate if a command is safe to execute. + + Args: + command: The command to validate + + Returns: + Tuple of (is_valid, error_message) + """ + try: + # Check for dangerous patterns first, before splitting + dangerous_patterns = [ + (r"[|;&`$]", "shell operators (|, ;, &, `, $)"), + (r"rm\s", "remove command"), + (r">\s", "output redirection"), + (r">>\s", "append redirection"), + (r"<\s", "input redirection"), + (r"\.\.", "parent directory traversal"), + (r"sudo\s", "sudo command"), + (r"chmod\s", "chmod command"), + (r"chown\s", "chown command"), + (r"mv\s", "move command"), + (r"cp\s", "copy command"), + ] + + for pattern, description in dangerous_patterns: + if re.search(pattern, command): + return False, f"Command contains dangerous pattern: {description}" + + # Split command into tokens while preserving quoted strings + tokens = shlex.split(command) + if not tokens: + return False, "Empty command" + + # Get base command (first token) + base_cmd = tokens[0] + + # Check if base command is in whitelist + if base_cmd not in ALLOWED_COMMANDS: + return False, f"Command '{base_cmd}' is not allowed. Allowed commands: {', '.join(sorted(ALLOWED_COMMANDS.keys()))}" + + # Extract and split combined flags (e.g., -la -> -l -a) + flags = set() + for token in tokens[1:]: + if token.startswith("-"): + if token.startswith("--"): + # Handle long options (e.g., --color) + flags.add(token) + else: + # Handle combined short options (e.g., -la) + # Skip the first "-" and add each character as a flag + for char in token[1:]: + flags.add(f"-{char}") + + allowed_flags = ALLOWED_COMMANDS[base_cmd] + + # For commands with no flag restrictions (like echo), skip flag validation + if allowed_flags: + invalid_flags = flags - allowed_flags + if invalid_flags: + return False, f"Flags {invalid_flags} are not allowed for command '{base_cmd}'. Allowed flags: {allowed_flags}" + + return True, "" + + except Exception as e: + return False, f"Failed to validate command: {e!s}" + + +def run_bash_command(command: str, is_background: bool = False) -> dict[str, Any]: + """Run a bash command and return its output. + + Args: + command: The command to run + is_background: Whether to run the command in the background + + Returns: + Dictionary containing the command output or error + """ + # First validate the command + is_valid, error_message = validate_command(command) + if not is_valid: + return { + "status": "error", + "error": f"Invalid command: {error_message}", + } + + try: + if is_background: + # For background processes, we use Popen and return immediately + process = subprocess.Popen( + command, + shell=True, + stdout=subprocess.PIPE, + stderr=subprocess.PIPE, + text=True, + ) + return { + "status": "success", + "message": f"Command '{command}' started in background with PID {process.pid}", + } + + # For foreground processes, we wait for completion + result = subprocess.run( + command, + shell=True, + capture_output=True, + text=True, + check=True, # This will raise CalledProcessError if command fails + ) + + return { + "status": "success", + "stdout": result.stdout, + "stderr": result.stderr, + } + except subprocess.CalledProcessError as e: + return { + "status": "error", + "error": f"Command failed with exit code {e.returncode}", + "stdout": e.stdout, + "stderr": e.stderr, + } + except Exception as e: + return { + "status": "error", + "error": f"Failed to run command: {e!s}", + } diff --git a/tests/integration/extension/test_bash.py b/tests/integration/extension/test_bash.py new file mode 100644 index 000000000..b7296556f --- /dev/null +++ b/tests/integration/extension/test_bash.py @@ -0,0 +1,90 @@ +"""Tests for bash command tools.""" + +import time + +from codegen.extensions.tools.bash import run_bash_command + + +def test_run_bash_command() -> None: + """Test running a bash command.""" + # Test a simple echo command + result = run_bash_command("echo 'Hello, World!'") + assert result["status"] == "success" + assert "Hello, World!" in result["stdout"] + assert result["stderr"] == "" + + # Test ls with combined flags + result = run_bash_command("ls -la") + assert result["status"] == "success" + + # Test ls with separate flags + result = run_bash_command("ls -l -a") + assert result["status"] == "success" + + # Test ls with long option + result = run_bash_command("ls --color") + assert result["status"] == "success" + + # Test grep with allowed flags + result = run_bash_command("grep -n test *.py") + assert result["status"] == "success" + + +def test_command_validation() -> None: + """Test command validation.""" + # Test disallowed command + result = run_bash_command("rm -rf /") + assert result["status"] == "error" + assert "dangerous pattern: remove command" in result["error"] + + # Test command with disallowed flags + result = run_bash_command("ls --invalid-flag") + assert result["status"] == "error" + assert "Flags" in result["error"] + assert "not allowed" in result["error"] + + # Test command with invalid combined flags + result = run_bash_command("ls -laz") # -z is not allowed + assert result["status"] == "error" + assert "Flags {'-z'} are not allowed" in result["error"] + + # Test dangerous patterns + dangerous_commands = [ + "ls | grep test", # Pipe + "ls; rm file", # Command chaining + "ls > output.txt", # Redirection + "sudo ls", # Sudo + "ls ../parent", # Parent directory + "mv file1 file2", # Move + "cp file1 file2", # Copy + "chmod +x file", # Change permissions + ] + + expected_patterns = [ + "shell operators", # For pipe + "shell operators", # For command chaining + "output redirection", # For redirection + "sudo command", # For sudo + "parent directory traversal", # For parent directory + "move command", # For move + "copy command", # For copy + "chmod command", # For chmod + ] + + for cmd, pattern in zip(dangerous_commands, expected_patterns): + result = run_bash_command(cmd) + assert result["status"] == "error", f"Command should be blocked: {cmd}" + assert f"dangerous pattern: {pattern}" in result["error"], f"Expected '{pattern}' in error for command: {cmd}" + + +def test_background_command() -> None: + """Test background command execution.""" + # Test a safe background command + result = run_bash_command("tail -f /dev/null", is_background=True) + assert result["status"] == "success" + assert "started in background with PID" in result["message"] + + # Clean up by finding and killing the background process + pid = int(result["message"].split()[-1]) + run_bash_command(f"ps -p {pid} || true") # Check if process exists + time.sleep(1) # Give process time to start/stop From 1a341bdfe81f8a4e98f37f02b72925007d780b23 Mon Sep 17 00:00:00 2001 From: "renovate[bot]" <29139614+renovate[bot]@users.noreply.github.com> Date: Sat, 15 Feb 2025 20:52:22 +0000 Subject: [PATCH 10/33] fix(deps): update dependency pygithub to v2.6.0 (#513) MIME-Version: 1.0 Content-Type: text/plain; charset=UTF-8 Content-Transfer-Encoding: 8bit This PR contains the following updates: | Package | Change | Age | Adoption | Passing | Confidence | |---|---|---|---|---|---| | [PyGithub](https://redirect.github.com/pygithub/pygithub) | `==2.5.0` -> `==2.6.0` | [![age](https://developer.mend.io/api/mc/badges/age/pypi/pygithub/2.6.0?slim=true)](https://docs.renovatebot.com/merge-confidence/) | [![adoption](https://developer.mend.io/api/mc/badges/adoption/pypi/pygithub/2.6.0?slim=true)](https://docs.renovatebot.com/merge-confidence/) | [![passing](https://developer.mend.io/api/mc/badges/compatibility/pypi/pygithub/2.5.0/2.6.0?slim=true)](https://docs.renovatebot.com/merge-confidence/) | [![confidence](https://developer.mend.io/api/mc/badges/confidence/pypi/pygithub/2.5.0/2.6.0?slim=true)](https://docs.renovatebot.com/merge-confidence/) | --- ### Release Notes
pygithub/pygithub (PyGithub) ### [`v2.6.0`](https://redirect.github.com/PyGithub/PyGithub/releases/tag/v2.6.0) [Compare Source](https://redirect.github.com/pygithub/pygithub/compare/v2.5.0...v2.6.0) ##### Breaking Changes - Rework `Views` and `Clones` by [@​EnricoMi](https://redirect.github.com/EnricoMi) in [https://github.com/PyGithub/PyGithub/pull/3168](https://redirect.github.com/PyGithub/PyGithub/pull/3168): View and clones traffic information returned by `Repository.get_views_traffic` and `Repository.get_clones_traffic` now return proper PyGithub objects, instead of a `dict`, with all information that used to be provided by the `dict`: Code like ```python repo.get_views_traffic().["views"].timestamp repo.get_clones_traffic().["clones"].timestamp ``` should be replaced with ```python repo.get_views_traffic().views.timestamp repo.get_clones_traffic().clones.timestamp ``` - Fix typos by [@​kianmeng](https://redirect.github.com/kianmeng) in [https://github.com/PyGithub/PyGithub/pull/3086](https://redirect.github.com/PyGithub/PyGithub/pull/3086): Property `OrganizationCustomProperty.respository_id` renamed to `OrganizationCustomProperty.repository_id`. ##### New Features - Add capability for global laziness by [@​EnricoMi](https://redirect.github.com/EnricoMi) in [https://github.com/PyGithub/PyGithub/pull/2746](https://redirect.github.com/PyGithub/PyGithub/pull/2746) - Add Support for GitHub Copilot Seat Management in Organizations by [@​pashafateev](https://redirect.github.com/pashafateev) in [https://github.com/PyGithub/PyGithub/pull/3082](https://redirect.github.com/PyGithub/PyGithub/pull/3082) - Get branches where commit is head by [@​EnricoMi](https://redirect.github.com/EnricoMi) in [https://github.com/PyGithub/PyGithub/pull/3083](https://redirect.github.com/PyGithub/PyGithub/pull/3083) - Support downloading a Release Asset by [@​neel-m](https://redirect.github.com/neel-m) in [https://github.com/PyGithub/PyGithub/pull/3060](https://redirect.github.com/PyGithub/PyGithub/pull/3060) - Add `Repository.merge_upstream` method by [@​Felixoid](https://redirect.github.com/Felixoid) in [https://github.com/PyGithub/PyGithub/pull/3175](https://redirect.github.com/PyGithub/PyGithub/pull/3175) - 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Link Commit to correct upstream documentation by [@​xmo-odoo](https://redirect.github.com/xmo-odoo) in [https://github.com/PyGithub/PyGithub/pull/2936](https://redirect.github.com/PyGithub/PyGithub/pull/2936) - Replace release drafter with Github release note generation by [@​EnricoMi](https://redirect.github.com/EnricoMi) in [https://github.com/PyGithub/PyGithub/pull/3196](https://redirect.github.com/PyGithub/PyGithub/pull/3196) - Add maintenance label to release.yml by [@​EnricoMi](https://redirect.github.com/EnricoMi) in [https://github.com/PyGithub/PyGithub/pull/3197](https://redirect.github.com/PyGithub/PyGithub/pull/3197) ##### New Contributors - [@​pashafateev](https://redirect.github.com/pashafateev) made their first contribution in [https://github.com/PyGithub/PyGithub/pull/3082](https://redirect.github.com/PyGithub/PyGithub/pull/3082) - [@​SebastienSyd](https://redirect.github.com/SebastienSyd) made their first contribution in [https://github.com/PyGithub/PyGithub/pull/3067](https://redirect.github.com/PyGithub/PyGithub/pull/3067) - 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--- ### Configuration 📅 **Schedule**: Branch creation - At any time (no schedule defined), Automerge - "* 0-3 * * 1" (UTC). 🚦 **Automerge**: Enabled. ♻ **Rebasing**: Whenever PR is behind base branch, or you tick the rebase/retry checkbox. 🔕 **Ignore**: Close this PR and you won't be reminded about this update again. --- - [ ] If you want to rebase/retry this PR, check this box --- This PR was generated by [Mend Renovate](https://mend.io/renovate/). View the [repository job log](https://developer.mend.io/github/codegen-sh/codegen-sdk). Co-authored-by: renovate[bot] <29139614+renovate[bot]@users.noreply.github.com> --- pyproject.toml | 2 +- uv.lock | 12 ++++++++---- 2 files changed, 9 insertions(+), 5 deletions(-) diff --git a/pyproject.toml b/pyproject.toml index 9691e960d..9ccbd09ae 100644 --- a/pyproject.toml +++ b/pyproject.toml @@ -54,7 +54,7 @@ dependencies = [ "unidiff>=0.7.5", "datamodel-code-generator>=0.26.5", "toml>=0.10.2", - "PyGithub==2.5.0", + "PyGithub==2.6.0", "GitPython==3.1.44", "psutil>=5.8.0", "fastapi[standard]<1.0.0,>=0.115.2", diff --git a/uv.lock b/uv.lock index a081d8023..9c1721adc 100644 --- a/uv.lock +++ b/uv.lock @@ -1,4 +1,5 @@ version = 1 +revision = 1 requires-python = ">=3.12, <3.14" resolution-markers = [ "python_full_version >= '3.12.4'", @@ -560,6 +561,7 @@ dependencies = [ { name = "lazy-object-proxy" }, { name = "mcp", extra = ["cli"] }, { name = "mini-racer" }, + { name = "modal" }, { name = "neo4j" }, { name = "networkx" }, { name = "numpy" }, @@ -681,6 +683,7 @@ requires-dist = [ { name = "lsprotocol", marker = "extra == 'lsp'", specifier = "==2024.0.0b1" }, { name = "mcp", extras = ["cli"] }, { name = "mini-racer", specifier = ">=0.12.4" }, + { name = "modal", specifier = ">=0.73.45" }, { name = "neo4j" }, { name = "networkx", specifier = ">=3.4.1" }, { name = "numpy", specifier = ">=2.2.2" }, @@ -693,7 +696,7 @@ requires-dist = [ { name = "pydantic-core", specifier = ">=2.23.4" }, { name = "pydantic-settings", specifier = ">=2.0.0" }, { name = "pygit2", specifier = ">=1.16.0" }, - { name = "pygithub", specifier = "==2.5.0" }, + { name = "pygithub", specifier = "==2.6.0" }, { name = "pygls", marker = "extra == 'lsp'", specifier = ">=2.0.0a2" }, { name = "pyinstrument", specifier = ">=5.0.0" }, { name = "pyjson5", specifier = "==1.6.8" }, @@ -730,6 +733,7 @@ requires-dist = [ { name = "wrapt", specifier = ">=1.16.0,<2.0.0" }, { name = "xmltodict", specifier = ">=0.13.0,<1.0.0" }, ] +provides-extras = ["lsp", "types"] [package.metadata.requires-dev] dev = [ @@ -2896,7 +2900,7 @@ wheels = [ [[package]] name = "pygithub" -version = "2.5.0" +version = "2.6.0" source = { registry = "https://pypi.org/simple" } dependencies = [ { name = "deprecated" }, @@ -2906,9 +2910,9 @@ dependencies = [ { name = "typing-extensions" }, { name = "urllib3" }, ] -sdist = { url = "https://files.pythonhosted.org/packages/16/ce/aa91d30040d9552c274e7ea8bd10a977600d508d579a4bb262b95eccf961/pygithub-2.5.0.tar.gz", hash = "sha256:e1613ac508a9be710920d26eb18b1905ebd9926aa49398e88151c1b526aad3cf", size = 3552804 } +sdist = { url = "https://files.pythonhosted.org/packages/60/7a/78a40edc07426052eb909f556deb8ae3158c234df49553bd4690bc6c4ba7/pygithub-2.6.0.tar.gz", hash = "sha256:04784fd6f4acfcaf91df5d3f08ef14153709395a34e706850f92337d9914548f", size = 3658095 } wheels = [ - { url = "https://files.pythonhosted.org/packages/37/05/bfbdbbc5d8aafd8dae9b3b6877edca561fccd8528ef5edc4e7b6d23721b5/PyGithub-2.5.0-py3-none-any.whl", hash = "sha256:b0b635999a658ab8e08720bdd3318893ff20e2275f6446fcf35bf3f44f2c0fd2", size = 375935 }, + { url = "https://files.pythonhosted.org/packages/f3/9e/ba08aa9e1632f8752648126505598b95429fcb7bb884c1eb9de5b2370d8f/PyGithub-2.6.0-py3-none-any.whl", hash = "sha256:22635b245b885413c607bb86393603cadcfdcb67a9b81ce9a64634e64f308084", size = 409218 }, ] [[package]] From 08624ae0e1a7720bb657605d49a2507c14e94b29 Mon Sep 17 00:00:00 2001 From: Vishal Shenoy Date: Sat, 15 Feb 2025 12:57:37 -0800 Subject: [PATCH 11/33] Codebase Analytics Dashboard Tutorial (#511) --- .../codebase-analytics-dashboard.mdx | 157 ++++++++++++++++++ 1 file changed, 157 insertions(+) create mode 100644 docs/tutorials/codebase-analytics-dashboard.mdx diff --git a/docs/tutorials/codebase-analytics-dashboard.mdx b/docs/tutorials/codebase-analytics-dashboard.mdx new file mode 100644 index 000000000..a1bcbc359 --- /dev/null +++ b/docs/tutorials/codebase-analytics-dashboard.mdx @@ -0,0 +1,157 @@ +--- +title: "Building a Codebase Analytics Dashboard with Codegen" +sidebarTitle: "Analytics Dashboard" +icon: "calculator" +iconType: "solid" +--- + +This tutorial explains how codebase metrics are effiently calculated using the `codegen` library in the Codebase Analytics Dashboard. The metrics include indeces of codebase maintainabilith and complexity. + +View the full code and setup instructions in our [codebase-analytics repository](https://github.com/codegen-sh/codebase-analytics). + +## Line Metrics + +Line metrics are used to determine the size and maintainability of the codebase. + +### Lines of Code +Lines of Code refers to the total number of lines in the source code, including blank lines and comments. This is accomplished with a simple count of all lines in the source file + +### Logical Lines of Code (LLOC) +LLOC is the amount of lines of code which contain actual functional statements. It excludes comments, blank lines, and other lines which do not contribute to the utility of the codebase. + +### Source Lines of Code (SLOC) +SLOC refers to the number of lines containing actual code, excluding blank lines. This includes programming language keywords and comments. + +### Comment Density +Comment density is calculated by dividing the lines of code which contain comments by the total lines of code in the codebase. The formula is: + +```python +"comment_density": (total_comments / total_loc * 100) +``` + +It measures the proportion of comments in the codebase and is a good indicator of how much code is properly documented. Accordingly, it can show how maintainable and easy to understand the codebase is. + +## Complexity Metrics + +### Cyclomatic Complexity +Cyclomatic Complexity measures the number of linearly independent paths through the codebase, making it a valuable indicator of how difficult code will be to test and maintain. + +**Calculation Method**: + - Base complexity of 1 + - +1 for each: + - if statement + - elif statement + - for loop + - while loop + - +1 for each boolean operator (and, or) in conditions + - +1 for each except block in try-catch statements + +The `calculate_cyclomatic_complexity()` function traverses the Codgen codebase object and uses the above rules to find statement objects within each function and calculate the overall cyclomatic complexity of the codebase. + +```python +def calculate_cyclomatic_complexity(function): + def analyze_statement(statement): + complexity = 0 + + if isinstance(statement, IfBlockStatement): + complexity += 1 + if hasattr(statement, "elif_statements"): + complexity += len(statement.elif_statements) + + elif isinstance(statement, (ForLoopStatement, WhileStatement)): + complexity += 1 + + return complexity +``` + +### Halstead Volume +Halstead Volume is a software metric which measures the complexity of a codebase by counting the number of unique operators and operands. It is calculated by multiplying the sum of unique operators and operands by the logarithm base 2 of the sum of unique operators and operands. + +**Halstead Volume**: `V = (N1 + N2) * log2(n1 + n2)` + +This calculation uses codegen's expression types to make this calculation very efficient - these include BinaryExpression, UnaryExpression and ComparisonExpression. The function extracts operators and operands from the codebase object and calculated in `calculate_halstead_volume()` function. + +```python +def calculate_halstead_volume(operators, operands): + n1 = len(set(operators)) + n2 = len(set(operands)) + + N1 = len(operators) + N2 = len(operands) + + N = N1 + N2 + n = n1 + n2 + + if n > 0: + volume = N * math.log2(n) + return volume, N1, N2, n1, n2 + return 0, N1, N2, n1, n2 +``` + +### Depth of Inheritance (DOI) +Depth of Inheritance measures the length of inheritance chain for each class. It is calculated by counting the length of the superclasses list for each class in the codebase. The implementation is handled through a simple calculation using codegen's class information in the `calculate_doi()` function. + +```python +def calculate_doi(cls): + return len(cls.superclasses) +``` + +## Maintainability Index +Maintainability Index is a software metric which measures how maintainable a codebase is. Maintainability is described as ease to support and change the code. This index is calculated as a factored formula consisting of SLOC (Source Lines Of Code), Cyclomatic Complexity and Halstead volume. + +**Maintainability Index**: `M = 171 - 5.2 * ln(HV) - 0.23 * CC - 16.2 * ln(SLOC)` + +This formula is then normalized to a scale of 0-100, where 100 is the maximum maintainability. + +The implementation is handled through the `calculate_maintainability_index()` function. The codegen codebase object is used to efficiently extract the Cyclomatic Complexity and Halstead Volume for each function and class in the codebase, which are then used to calculate the maintainability index. + +```python +def calculate_maintainability_index( + halstead_volume: float, cyclomatic_complexity: float, loc: int +) -> int: + """Calculate the normalized maintainability index for a given function.""" + if loc <= 0: + return 100 + + try: + raw_mi = ( + 171 + - 5.2 * math.log(max(1, halstead_volume)) + - 0.23 * cyclomatic_complexity + - 16.2 * math.log(max(1, loc)) + ) + normalized_mi = max(0, min(100, raw_mi * 100 / 171)) + return int(normalized_mi) + except (ValueError, TypeError): + return 0 +``` + +## General Codebase Statistics +The number of files is determined by traversing codegen's FileNode objects in the parsed codebase. The number of functions is calculated by counting FunctionDef nodes across all parsed files. The number of classes is obtained by summing ClassDef nodes throughout the codebase. + +```python +num_files = len(codebase.files(extensions="*")) +num_functions = len(codebase.functions) +num_classes = len(codebase.classes) +``` + +The commit activity is calculated by using the git history of the repository. The number of commits is counted for each month in the last 12 months. + +## Using the Analysis Tool (Modal Server) + +The tool is implemented as a FastAPI application wrapped in a Modal deployment. To analyze a repository: + +1. Send a POST request to `/analyze_repo` with the repository URL +2. The tool will: + - Clone the repository + - Parse the codebase using codegen + - Calculate all metrics + - Return a comprehensive JSON response with all metrics + +This is the only endpoint in the FastAPI server, as it takes care of the entire analysis process. + +To run the FastAPI server locally, install all dependencies and run the server with `modal serve modal_main.py`. + +## Frontend Dashboard + +The frontend dashboard is implemented as a Next.js application. It is built using Shadcn/UI and uses the `@/components` directory for components. \ No newline at end of file From a75991baaa457caa815d802e4c0a571f733eaf5f Mon Sep 17 00:00:00 2001 From: Jay Hack Date: Sat, 15 Feb 2025 12:58:13 -0800 Subject: [PATCH 12/33] fix: deep code research (#512) --- .../examples/deep_code_research/README.md | 67 ++++++++ .../deep_code_research/requirements.txt | 7 + .../examples/deep_code_research/run.py | 152 ++++++++++++++++++ src/codegen/extensions/langchain/agent.py | 57 +++++++ 4 files changed, 283 insertions(+) create mode 100644 codegen-examples/examples/deep_code_research/README.md create mode 100644 codegen-examples/examples/deep_code_research/requirements.txt create mode 100644 codegen-examples/examples/deep_code_research/run.py diff --git a/codegen-examples/examples/deep_code_research/README.md b/codegen-examples/examples/deep_code_research/README.md new file mode 100644 index 000000000..140f37806 --- /dev/null +++ b/codegen-examples/examples/deep_code_research/README.md @@ -0,0 +1,67 @@ +# Deep Code Research Example + +This example demonstrates how to use Codegen to build a CLI tool for deep code research. The tool allows you to: + +- Clone and analyze any GitHub repository +- Ask questions about the codebase +- Explore dependencies and relationships +- Search for patterns and implementations + +## Setup + +1. Install the requirements: + +```bash +uv venv +source .venv/bin/activate +uv sync +``` + +2. Set up your OpenAI API key in a `.env`: + +```bash +OPENAI_API_KEY=your-api-key +``` + +## Usage + +Run the CLI tool by providing a GitHub repository: + +```bash +python run.py research "owner/repo" +``` + +For example: + +```bash +python run.py research "fastapi/fastapi" +``` + +You can also provide an initial query: + +```bash +python run.py research "fastapi/fastapi" -q "Explain the main components" +``` + +## Example Queries + +- "Explain the main components and their relationships" +- "Find all usages of the FastAPI class" +- "Show me the dependency graph for the routing module" +- "What design patterns are used in this codebase?" +- "How is dependency injection implemented?" + +## Features + +The research agent has access to several powerful tools: + +- Semantic code search +- Symbol relationship analysis +- Directory structure exploration +- Code viewing and analysis + +The agent maintains conversation history, so you can ask follow-up questions and build on previous findings. + +## Exit + +Type "exit" or "quit" to end the research session. diff --git a/codegen-examples/examples/deep_code_research/requirements.txt b/codegen-examples/examples/deep_code_research/requirements.txt new file mode 100644 index 000000000..87a0b8786 --- /dev/null +++ b/codegen-examples/examples/deep_code_research/requirements.txt @@ -0,0 +1,7 @@ +click>=8.0.0 +rich>=10.0.0 +rich-click>=1.7.0 +langchain-core>=0.1.0 +langchain-openai>=0.0.5 +langchain>=0.1.0 +codegen-sdk>=0.1.0 diff --git a/codegen-examples/examples/deep_code_research/run.py b/codegen-examples/examples/deep_code_research/run.py new file mode 100644 index 000000000..4c4c8e432 --- /dev/null +++ b/codegen-examples/examples/deep_code_research/run.py @@ -0,0 +1,152 @@ +"""CLI program for deep code research using Codegen.""" + +import sys +import warnings +from pathlib import Path +from typing import Optional + +import rich_click as click +from codegen import Codebase +from codegen.extensions.langchain.agent import create_agent_with_tools +from codegen.extensions.langchain.tools import ( + ListDirectoryTool, + RevealSymbolTool, + SearchTool, + SemanticSearchTool, + ViewFileTool, +) +from langchain_core.messages import SystemMessage +from rich.console import Console +from rich.markdown import Markdown +from rich.prompt import Prompt + +# Suppress LangSmith warning +warnings.filterwarnings("ignore", message="API key must be provided when using hosted LangSmith API") + +# Add the project root to Python path +project_root = str(Path(__file__).parent.parent.parent) +sys.path.append(project_root) + +# Configure rich-click +click.rich_click.USE_RICH_MARKUP = True +click.rich_click.USE_MARKDOWN = True +click.rich_click.SHOW_ARGUMENTS = True +click.rich_click.GROUP_ARGUMENTS_OPTIONS = True +click.rich_click.STYLE_ERRORS_SUGGESTION = "yellow italic" +click.rich_click.ERRORS_SUGGESTION = "Try running the command with --help for more information" + +console = Console() + +RESEARCH_AGENT_PROMPT = """You are a code research expert. Your goal is to help users understand codebases by: +1. Finding relevant code through semantic and text search +2. Analyzing symbol relationships and dependencies +3. Exploring directory structures +4. Reading and explaining code + +Always explain your findings in detail and provide context about how different parts of the code relate to each other. +When analyzing code, consider: +- The purpose and functionality of each component +- How different parts interact +- Key patterns and design decisions +- Potential areas for improvement + +Break down complex concepts into understandable pieces and use examples when helpful.""" + + +def initialize_codebase(repo_name: str) -> Optional[Codebase]: + """Initialize a codebase with a spinner showing progress.""" + with console.status("") as status: + try: + # Update status with specific steps + status.update(f"[bold blue]Cloning {repo_name}...[/bold blue]") + codebase = Codebase.from_repo(repo_name) + status.update("[bold green]✓ Repository cloned successfully![/bold green]") + return codebase + except Exception as e: + console.print(f"[bold red]Error initializing codebase:[/bold red] {e}") + return None + + +@click.group() +def cli(): + """[bold blue]🔍 Codegen Code Research CLI[/bold blue] + + A powerful tool for deep code analysis and research. + """ + pass + + +@cli.command() +@click.argument("repo_name", required=False) +@click.option("--query", "-q", default=None, help="Initial research query to start with.") +def research(repo_name: Optional[str] = None, query: Optional[str] = None): + """[bold green]Start a code research session[/bold green] + + [blue]Arguments:[/blue] + [yellow]REPO_NAME[/yellow]: GitHub repository in format 'owner/repo' (optional, will prompt if not provided) + """ + # If no repo name provided, prompt for it + if not repo_name: + console.print("\n[bold]Welcome to the Code Research CLI![/bold]") + console.print("\nEnter a GitHub repository to analyze (format: owner/repo)\nExamples:\n • fastapi/fastapi\n • pytorch/pytorch\n • microsoft/TypeScript") + repo_name = Prompt.ask("\n[bold cyan]Repository name[/bold cyan]") + + # Initialize codebase + codebase = initialize_codebase(repo_name) + if not codebase: + return + + # Create research tools + tools = [ + ViewFileTool(codebase), + ListDirectoryTool(codebase), + SearchTool(codebase), + SemanticSearchTool(codebase), + RevealSymbolTool(codebase), + ] + + # Initialize agent with research tools + with console.status("[bold blue]Initializing research agent...[/bold blue]") as status: + agent = create_agent_with_tools(codebase=codebase, tools=tools, chat_history=[SystemMessage(content=RESEARCH_AGENT_PROMPT)], verbose=True) + status.update("[bold green]✓ Research agent ready![/bold green]") + + # Get initial query if not provided + if not query: + console.print( + "\n[bold]What would you like to research?[/bold]" + "\n[dim]Example queries:[/dim]" + "\n• [italic]Explain the main components and their relationships[/italic]" + "\n• [italic]Find all usages of X function/class[/italic]" + "\n• [italic]Show me the dependency graph for Y module[/italic]" + "\n• [italic]What design patterns are used in this codebase?[/italic]" + ) + query = Prompt.ask("\n[bold cyan]Research query[/bold cyan]") + + # Main research loop + while True: + if not query: + query = Prompt.ask("\n[bold cyan]Research query[/bold cyan]") + + if query.lower() in ["exit", "quit"]: + console.print("\n[bold green]Thanks for using the Code Research CLI! Goodbye![/bold green]") + break + + # Run the agent + with console.status("[bold blue]Researching...[/bold blue]", spinner="dots") as status: + try: + result = agent.invoke( + {"input": query}, + config={"configurable": {"session_id": "research"}}, + ) + # Display the result + console.print("\n[bold blue]📊 Research Findings:[/bold blue]") + console.print(Markdown(result["output"])) + except Exception as e: + console.print(f"\n[bold red]Error during research:[/bold red] {e}") + + # Clear query for next iteration + query = None + + +if __name__ == "__main__": + cli() diff --git a/src/codegen/extensions/langchain/agent.py b/src/codegen/extensions/langchain/agent.py index 22964c5ac..986b90fc8 100644 --- a/src/codegen/extensions/langchain/agent.py +++ b/src/codegen/extensions/langchain/agent.py @@ -3,6 +3,7 @@ from langchain.agents import AgentExecutor from langchain.agents.openai_functions_agent.base import OpenAIFunctionsAgent from langchain.hub import pull +from langchain.tools import BaseTool from langchain_core.chat_history import InMemoryChatMessageHistory from langchain_core.messages import BaseMessage from langchain_core.runnables.history import RunnableWithMessageHistory @@ -163,3 +164,59 @@ def create_codebase_inspector_agent( input_messages_key="input", history_messages_key="chat_history", ) + + +def create_agent_with_tools( + codebase: Codebase, + tools: list[BaseTool], + model_name: str = "gpt-4o", + temperature: float = 0, + verbose: bool = True, + chat_history: list[BaseMessage] = [], +) -> RunnableWithMessageHistory: + """Create an agent with a specific set of tools. + + Args: + codebase: The codebase to operate on + tools: List of tools to provide to the agent + model_name: Name of the model to use (default: gpt-4) + temperature: Model temperature (default: 0) + verbose: Whether to print agent's thought process (default: True) + chat_history: Optional list of messages to initialize chat history with + + Returns: + Initialized agent with message history + """ + # Initialize language model + llm = ChatOpenAI( + model_name=model_name, + temperature=temperature, + ) + + # Get the prompt to use + prompt = pull("hwchase17/openai-functions-agent") + + # Create the agent + agent = OpenAIFunctionsAgent( + llm=llm, + tools=tools, + prompt=prompt, + ) + + # Create the agent executor + agent_executor = AgentExecutor( + agent=agent, + tools=tools, + verbose=verbose, + ) + + # Create message history handler + message_history = InMemoryChatMessageHistory(messages=chat_history) + + # Wrap with message history + return RunnableWithMessageHistory( + agent_executor, + lambda session_id: message_history, + input_messages_key="input", + history_messages_key="chat_history", + ) From ec2ef116b0d1a9abfb3ace219998d6076c7018bb Mon Sep 17 00:00:00 2001 From: Jay Hack Date: Sat, 15 Feb 2025 13:34:36 -0800 Subject: [PATCH 13/33] docs: docs research agent (#514) --- docs/mint.json | 1 + docs/tutorials/deep-code-research.mdx | 212 ++++++++++++++++++++++++++ 2 files changed, 213 insertions(+) create mode 100644 docs/tutorials/deep-code-research.mdx diff --git a/docs/mint.json b/docs/mint.json index 12a8cd187..305f14dfa 100644 --- a/docs/mint.json +++ b/docs/mint.json @@ -84,6 +84,7 @@ "tutorials/at-a-glance", "tutorials/build-code-agent", "tutorials/slack-bot", + "tutorials/deep-code-research", "tutorials/training-data", "tutorials/codebase-visualization", "tutorials/migrating-apis", diff --git a/docs/tutorials/deep-code-research.mdx b/docs/tutorials/deep-code-research.mdx new file mode 100644 index 000000000..e4a5119ac --- /dev/null +++ b/docs/tutorials/deep-code-research.mdx @@ -0,0 +1,212 @@ +--- +title: "Deep Code Research with AI" +sidebarTitle: "Code Research Agent" +icon: "magnifying-glass" +iconType: "solid" +--- + +This guide demonstrates how to build an intelligent code research tool that can analyze and explain codebases using Codegen's and LangChain. The tool combines semantic code search, dependency analysis, and natural language understanding to help developers quickly understand new codebases. + +View the full code on [GitHub](https://github.com/codegen-sh/codegen-sdk/tree/develop/codegen-examples/examples/deep_code_research) + +This example works with any public GitHub repository - just provide the repo name in the format owner/repo + +## Overview + +The process involves three main components: + +1. A CLI interface for interacting with the research agent +2. A set of code analysis tools powered by Codegen +3. An LLM-powered agent that combines the tools to answer questions + +Let's walk through building each component. + +## Step 1: Setting Up the Research Tools + +First, let's import the necessary components and set up our research tools: + +```python +from codegen import Codebase +from codegen.extensions.langchain.agent import create_agent_with_tools +from codegen.extensions.langchain.tools import ( + ListDirectoryTool, + RevealSymbolTool, + SearchTool, + SemanticSearchTool, + ViewFileTool, +) +from langchain_core.messages import SystemMessage +``` + +We'll create a function to initialize our codebase with a nice progress indicator: + +```python +def initialize_codebase(repo_name: str) -> Optional[Codebase]: + """Initialize a codebase with a spinner showing progress.""" + with console.status("") as status: + try: + status.update(f"[bold blue]Cloning {repo_name}...[/bold blue]") + codebase = Codebase.from_repo(repo_name) + status.update("[bold green]✓ Repository cloned successfully![/bold green]") + return codebase + except Exception as e: + console.print(f"[bold red]Error initializing codebase:[/bold red] {e}") + return None +``` + +Then we'll set up our research tools: + +```python +# Create research tools +tools = [ + ViewFileTool(codebase), # View file contents + ListDirectoryTool(codebase), # Explore directory structure + SearchTool(codebase), # Text-based search + SemanticSearchTool(codebase), # Natural language search + RevealSymbolTool(codebase), # Analyze symbol relationships +] +``` + +Each tool provides specific capabilities: +- `ViewFileTool`: Read and understand file contents +- `ListDirectoryTool`: Explore the codebase structure +- `SearchTool`: Find specific code patterns +- `SemanticSearchTool`: Search using natural language +- `RevealSymbolTool`: Analyze dependencies and usages + +## Step 2: Creating the Research Agent + +Next, we'll create an agent that can use these tools intelligently. We'll give it a detailed prompt about its role: + +```python +RESEARCH_AGENT_PROMPT = """You are a code research expert. Your goal is to help users understand codebases by: +1. Finding relevant code through semantic and text search +2. Analyzing symbol relationships and dependencies +3. Exploring directory structures +4. Reading and explaining code + +Always explain your findings in detail and provide context about how different parts of the code relate to each other. +When analyzing code, consider: +- The purpose and functionality of each component +- How different parts interact +- Key patterns and design decisions +- Potential areas for improvement + +Break down complex concepts into understandable pieces and use examples when helpful.""" + +# Initialize the agent +agent = create_agent_with_tools( + codebase=codebase, + tools=tools, + chat_history=[SystemMessage(content=RESEARCH_AGENT_PROMPT)], + verbose=True +) +``` + +## Step 3: Building the CLI Interface + +Finally, we'll create a user-friendly CLI interface using rich-click: + +```python +import rich_click as click +from rich.console import Console +from rich.markdown import Markdown + +@click.group() +def cli(): + """🔍 Codegen Code Research CLI""" + pass + +@cli.command() +@click.argument("repo_name", required=False) +@click.option("--query", "-q", default=None, help="Initial research query.") +def research(repo_name: Optional[str] = None, query: Optional[str] = None): + """Start a code research session.""" + # Initialize codebase + codebase = initialize_codebase(repo_name) + + # Create and run the agent + agent = create_research_agent(codebase) + + # Main research loop + while True: + if not query: + query = Prompt.ask("[bold cyan]Research query[/bold cyan]") + + result = agent.invoke({"input": query}) + console.print(Markdown(result["output"])) + + query = None # Clear for next iteration +``` + +## Using the Research Tool + +You can use the tool in several ways: + +1. Interactive mode (will prompt for repo): +```bash +python run.py research +``` + +2. Specify a repository: +```bash +python run.py research "fastapi/fastapi" +``` + +3. Start with an initial query: +```bash +python run.py research "fastapi/fastapi" -q "Explain the main components" +``` + +Example research queries: +- "Explain the main components and their relationships" +- "Find all usages of the FastAPI class" +- "Show me the dependency graph for the routing module" +- "What design patterns are used in this codebase?" + + + The agent maintains conversation history, so you can ask follow-up questions + and build on previous findings. + + +## Advanced Usage + +### Custom Research Tools + +You can extend the agent with custom tools for specific analysis needs: + +```python +from langchain.tools import BaseTool +from pydantic import BaseModel, Field + +class CustomAnalysisTool(BaseTool): + """Custom tool for specialized code analysis.""" + name = "custom_analysis" + description = "Performs specialized code analysis" + + def _run(self, query: str) -> str: + # Custom analysis logic + return results + +# Add to tools list +tools.append(CustomAnalysisTool()) +``` + +### Customizing the Agent + +You can modify the agent's behavior by adjusting its prompt: + +```python +CUSTOM_PROMPT = """You are a specialized code reviewer focused on: +1. Security best practices +2. Performance optimization +3. Code maintainability +... +""" + +agent = create_agent_with_tools( + codebase=codebase, + tools=tools, + chat_history=[SystemMessage(content=CUSTOM_PROMPT)], +) +``` \ No newline at end of file From c8e3a202f89ef9e9b33e7d3edd6cd3217565baed Mon Sep 17 00:00:00 2001 From: Jay Hack Date: Sat, 15 Feb 2025 16:33:53 -0800 Subject: [PATCH 14/33] Update build-code-agent.mdx --- docs/tutorials/build-code-agent.mdx | 4 ++-- 1 file changed, 2 insertions(+), 2 deletions(-) diff --git a/docs/tutorials/build-code-agent.mdx b/docs/tutorials/build-code-agent.mdx index 098023d22..7afea1e29 100644 --- a/docs/tutorials/build-code-agent.mdx +++ b/docs/tutorials/build-code-agent.mdx @@ -22,7 +22,7 @@ First, let's import the necessary components and create our agent: ```python from langchain_openai import ChatOpenAI from codegen import Codebase -from codegen.extensions.langchain import create_codebase_agent +from codegen.extensions.langchain.agent import create_codebase_agent # Initialize codebase codebase = Codebase.from_repo("fastapi/fastapi") @@ -166,4 +166,4 @@ agent = create_codebase_agent( tools=tools, model_name="gpt-4" ) -``` \ No newline at end of file +``` From 8f9db9b17f30942ef61e42a3678b3449f293ad0b Mon Sep 17 00:00:00 2001 From: Jay Hack Date: Sat, 15 Feb 2025 21:23:35 -0800 Subject: [PATCH 15/33] feat: slack webhook handler (#516) --- pyproject.toml | 1 + src/codegen/extensions/events/app.py | 7 +- src/codegen/extensions/events/slack.py | 102 +++++++++++++++++++++++++ uv.lock | 1 + 4 files changed, 109 insertions(+), 2 deletions(-) create mode 100644 src/codegen/extensions/events/slack.py diff --git a/pyproject.toml b/pyproject.toml index 9ccbd09ae..01240671e 100644 --- a/pyproject.toml +++ b/pyproject.toml @@ -71,6 +71,7 @@ dependencies = [ "mcp[cli]", "neo4j", "modal>=0.73.45", + "slack-sdk", ] license = { text = "Apache-2.0" } diff --git a/src/codegen/extensions/events/app.py b/src/codegen/extensions/events/app.py index 696a48377..3e004e366 100644 --- a/src/codegen/extensions/events/app.py +++ b/src/codegen/extensions/events/app.py @@ -3,19 +3,22 @@ import modal # deptry: ignore from codegen.extensions.events.linear import Linear +from codegen.extensions.events.slack import Slack logger = logging.getLogger(__name__) class CodegenApp(modal.App): linear: Linear + slack: Slack - def __init__(self, name, modal_api_key, image: modal.Image): + def __init__(self, name: str, modal_api_key: str, image: modal.Image): self._modal_api_key = modal_api_key self._image = image self._name = name super().__init__(name=name, image=image) - # Expose a attribute that provides the event decorator for different providers. + # Expose attributes that provide event decorators for different providers. self.linear = Linear(self) + self.slack = Slack(self) diff --git a/src/codegen/extensions/events/slack.py b/src/codegen/extensions/events/slack.py new file mode 100644 index 000000000..464d8e15b --- /dev/null +++ b/src/codegen/extensions/events/slack.py @@ -0,0 +1,102 @@ +import logging +import os +from typing import Literal + +from pydantic import BaseModel, Field +from slack_sdk import WebClient + +from codegen.extensions.events.interface import EventHandlerManagerProtocol + +logger = logging.getLogger(__name__) +logger.setLevel(logging.DEBUG) + + +class RichTextElement(BaseModel): + type: str + user_id: str | None = None + text: str | None = None + + +class RichTextSection(BaseModel): + type: Literal["rich_text_section"] + elements: list[RichTextElement] + + +class Block(BaseModel): + type: Literal["rich_text"] + block_id: str + elements: list[RichTextSection] + + +class SlackEvent(BaseModel): + user: str + type: str + ts: str + client_msg_id: str + text: str + team: str + blocks: list[Block] + channel: str + event_ts: str + + +class SlackWebhookPayload(BaseModel): + token: str | None = Field(None) + team_id: str | None = Field(None) + api_app_id: str | None = Field(None) + event: SlackEvent | None = Field(None) + type: str | None = Field(None) + event_id: str | None = Field(None) + event_time: int | None = Field(None) + challenge: str | None = Field(None) + subtype: str | None = Field(None) + + +class Slack(EventHandlerManagerProtocol): + _client: WebClient | None = None + + def __init__(self, app): + self.registered_handlers = {} + + @property + def client(self) -> WebClient: + if not self._client: + self._client = WebClient(token=os.environ["SLACK_BOT_TOKEN"]) + return self._client + + def unsubscribe_all_handlers(self): + logger.info("[HANDLERS] Clearing all handlers") + self.registered_handlers.clear() + + def handle(self, event: SlackWebhookPayload): + logger.info("[HANDLER] Handling Slack event") + if event.type == "url_verification": + return {"challenge": event.challenge} + elif event.type == "event_callback": + event = event.event + if event.type not in self.registered_handlers: + logger.info(f"[HANDLER] No handler found for event type: {event.type}") + return {"message": "Event handled successfully"} + else: + handler = self.registered_handlers[event.type] + return handler(event) + else: + logger.info(f"[HANDLER] No handler found for event type: {event.type}") + return {"message": "Event handled successfully"} + + def event(self, event_name: str): + """Decorator for registering a Slack event handler.""" + logger.info(f"[EVENT] Registering handler for {event_name}") + + def register_handler(func): + # Register the handler with the app's registry + func_name = func.__qualname__ + logger.info(f"[EVENT] Registering function {func_name} for {event_name}") + + def new_func(event): + return func(self.client, event) + + self.registered_handlers[event_name] = new_func + return new_func + + return register_handler diff --git a/uv.lock b/uv.lock index 9c1721adc..c86f22d69 100644 --- a/uv.lock +++ b/uv.lock @@ -538,6 +538,7 @@ wheels = [ [[package]] name = "codegen" +version = "0.17.1.dev8+g33792651.d20250216" source = { editable = "." } dependencies = [ { name = "anthropic" }, From 93a76350fd9308116c01f21632a29b79b583c7cc Mon Sep 17 00:00:00 2001 From: Vishal Shenoy Date: Sat, 15 Feb 2025 21:50:39 -0800 Subject: [PATCH 16/33] Fixing links to examples in tutorials (#515) Some of the tutorials still link to the deprecated `codegen-examples` repo. This PR makes all tutorials link to the `codegen-examples` in `codegen-sdk`. --- docs/tutorials/fixing-import-loops-in-pytorch.mdx | 2 +- docs/tutorials/flask-to-fastapi.mdx | 6 +++--- docs/tutorials/python2-to-python3.mdx | 6 +++--- docs/tutorials/sqlalchemy-1.6-to-2.0.mdx | 2 +- docs/tutorials/training-data.mdx | 2 +- docs/tutorials/unittest-to-pytest.mdx | 2 +- 6 files changed, 10 insertions(+), 10 deletions(-) diff --git a/docs/tutorials/fixing-import-loops-in-pytorch.mdx b/docs/tutorials/fixing-import-loops-in-pytorch.mdx index 3eb3ed2d4..b139c969f 100644 --- a/docs/tutorials/fixing-import-loops-in-pytorch.mdx +++ b/docs/tutorials/fixing-import-loops-in-pytorch.mdx @@ -23,7 +23,7 @@ Import loops occur when two or more Python modules depend on each other, creatin In this tutorial, we'll explore how to identify and fix problematic import cycles using Codegen. -You can find the complete example code in our [examples repository](https://github.com/codegen-sh/codegen-examples/tree/main/examples/removing_import_loops_in_pytorch). +You can find the complete example code in our [examples repository](https://github.com/codegen-sh/codegen-sdk/tree/93f0d4cd7740e3e01ee7ecfd69fd3259b8ebf783/codegen-examples/examples/removing_import_loops_in_pytorch). ## Overview diff --git a/docs/tutorials/flask-to-fastapi.mdx b/docs/tutorials/flask-to-fastapi.mdx index ba4fb3fce..bc7038c5d 100644 --- a/docs/tutorials/flask-to-fastapi.mdx +++ b/docs/tutorials/flask-to-fastapi.mdx @@ -7,7 +7,7 @@ iconType: "solid" Migrating from [Flask](https://flask.palletsprojects.com/) to [FastAPI](https://fastapi.tiangolo.com/) involves several key changes to your codebase. This guide will walk you through using Codegen to automate this migration, handling imports, route decorators, static files, and template rendering. -You can find the complete example code in our [examples repository](https://github.com/codegen-sh/codegen-examples/tree/7b978091c3153b687c32928fe10f05425e22f6a5/examples/flask_to_fastapi_migration) +You can find the complete example code in our [examples repository](https://github.com/codegen-sh/codegen-sdk/tree/93f0d4cd7740e3e01ee7ecfd69fd3259b8ebf783/codegen-examples/examples/flask_to_fastapi_migration) ## Overview @@ -183,8 +183,8 @@ def list_users(request: Request): You can run the complete migration using our example script: ```bash -git clone https://github.com/codegen-sh/codegen-examples.git -cd codegen-examples/flask_to_fastapi_migration +git clone https://github.com/codegen-sh/codegen-sdk.git +cd codegen-examples/examples/flask_to_fastapi_migration python run.py ``` diff --git a/docs/tutorials/python2-to-python3.mdx b/docs/tutorials/python2-to-python3.mdx index c72227d14..72758ef93 100644 --- a/docs/tutorials/python2-to-python3.mdx +++ b/docs/tutorials/python2-to-python3.mdx @@ -9,7 +9,7 @@ iconType: "solid" Migrating from Python 2 to Python 3 involves several syntax and API changes. This guide will walk you through using Codegen to automate this migration, handling print statements, string handling, iterators, and more. -You can find the complete example code in our [examples repository](https://github.com/codegen-sh/codegen-examples/tree/7b978091c3153b687c32928fe10f05425e22f6a5/examples/python2_to_python3). +You can find the complete example code in our [examples repository](https://github.com/codegen-sh/codegen-sdk/tree/93f0d4cd7740e3e01ee7ecfd69fd3259b8ebf783/codegen-examples/examples/python2_to_python3). ## Overview @@ -222,8 +222,8 @@ class MyIterator: You can run the complete migration using our example script: ```bash -git clone https://github.com/codegen-sh/codegen-examples.git -cd codegen-examples/python2_to_python3 +git clone https://github.com/codegen-sh/codegen-sdk.git +cd codegen-examples/examples/python2_to_python3 python run.py ``` diff --git a/docs/tutorials/sqlalchemy-1.6-to-2.0.mdx b/docs/tutorials/sqlalchemy-1.6-to-2.0.mdx index 68894ab32..6df92f591 100644 --- a/docs/tutorials/sqlalchemy-1.6-to-2.0.mdx +++ b/docs/tutorials/sqlalchemy-1.6-to-2.0.mdx @@ -9,7 +9,7 @@ iconType: "solid" Migrating from [SQLAlchemy](https://www.sqlalchemy.org/) 1.6 to 2.0 involves several API changes to support the new 2.0-style query interface. This guide will walk you through using Codegen to automate this migration, handling query syntax, session usage, and ORM patterns. -You can find the complete example code in our [examples repository](https://github.com/codegen-sh/codegen-examples/tree/7b978091c3153b687c32928fe10f05425e22f6a5/examples/sqlalchemy_1.6_to_2.0). +You can find the complete example code in our [examples repository](https://github.com/codegen-sh/codegen-sdk/tree/93f0d4cd7740e3e01ee7ecfd69fd3259b8ebf783/codegen-examples/examples/sqlalchemy_1.6_to_2.0). ## Overview diff --git a/docs/tutorials/training-data.mdx b/docs/tutorials/training-data.mdx index 038aab5d8..742a661f6 100644 --- a/docs/tutorials/training-data.mdx +++ b/docs/tutorials/training-data.mdx @@ -8,7 +8,7 @@ iconType: "solid" This guide demonstrates how to use Codegen to generate high-quality training data for large language models (LLMs) by extracting function implementations along with their dependencies and usages. This approach is similar to [word2vec](https://www.tensorflow.org/text/tutorials/word2vec) or [node2vec](https://snap.stanford.edu/node2vec/) - given the context of a function, learn to predict the function's implementation. -View the full code in our [examples repository](https://github.com/codegen-sh/codegen-examples/tree/7b978091c3153b687c32928fe10f05425e22f6a5/examples/generate_training_data) +View the full code in our [examples repository](https://github.com/codegen-sh/codegen-sdk/tree/93f0d4cd7740e3e01ee7ecfd69fd3259b8ebf783/codegen-examples/examples/generate_training_data) This example works with both Python and Typescript repositories without modification diff --git a/docs/tutorials/unittest-to-pytest.mdx b/docs/tutorials/unittest-to-pytest.mdx index f58a9d32f..f89472a05 100644 --- a/docs/tutorials/unittest-to-pytest.mdx +++ b/docs/tutorials/unittest-to-pytest.mdx @@ -9,7 +9,7 @@ iconType: "solid" Migrating from [unittest](https://docs.python.org/3/library/unittest.html) to [pytest](https://docs.pytest.org/) involves converting test classes and assertions to pytest's more modern and concise style. This guide will walk you through using Codegen to automate this migration. -You can find the complete example code in our [examples repository](https://github.com/codegen-sh/codegen-examples/tree/7b978091c3153b687c32928fe10f05425e22f6a5/examples/unittest_to_pytest). +You can find the complete example code in our [examples repository](https://github.com/codegen-sh/codegen-sdk/tree/93f0d4cd7740e3e01ee7ecfd69fd3259b8ebf783/codegen-examples/examples/unittest_to_pytest). ## Overview From 57ead4bd14d35b7e98af43632772c52091691bcb Mon Sep 17 00:00:00 2001 From: Jay Hack Date: Sat, 15 Feb 2025 21:54:33 -0800 Subject: [PATCH 17/33] docs: agent docs hotfix (#517) --- docs/tutorials/build-code-agent.mdx | 40 ++++++++++------------------- 1 file changed, 14 insertions(+), 26 deletions(-) diff --git a/docs/tutorials/build-code-agent.mdx b/docs/tutorials/build-code-agent.mdx index 7afea1e29..4f173d435 100644 --- a/docs/tutorials/build-code-agent.mdx +++ b/docs/tutorials/build-code-agent.mdx @@ -30,7 +30,7 @@ codebase = Codebase.from_repo("fastapi/fastapi") # Create the agent with GPT-4 agent = create_codebase_agent( codebase=codebase, - model_name="gpt-4", + model_name="gpt-4o", temperature=0, verbose=True ) @@ -71,28 +71,22 @@ Let's see some examples of how to interact with the agent: ```python # Analyze dependencies result = agent.invoke( - { - "input": "What are the dependencies of the FastAPI class?", - "config": {"configurable": {"session_id": "demo"}} - } + {"input": "What are the dependencies of the FastAPI class?"}, + confeg={"configurable": {"session_id": "demo"}} ) print(result["output"]) # Find usage patterns result = agent.invoke( - { - "input": "Show me examples of dependency injection in the codebase", - "config": {"configurable": {"session_id": "demo"}} - } + {"input": "Show me examples of dependency injection in the codebase"}, + config={"configurable": {"session_id": "demo"}} ) print(result["output"]) # Perform code analysis result = agent.invoke( - { - "input": "What's the most complex function in terms of dependencies?", - "config": {"configurable": {"session_id": "demo"}} - } + {"input": "What's the most complex function in terms of dependencies?"}, + config={"configurable": {"session_id": "demo"}} ) print(result["output"]) ``` @@ -106,26 +100,20 @@ The agent can also perform code changes: ```python # Move a function to a new file result = agent.invoke( - { - "input": "Move the validate_email function to validation_utils.py", - "config": {"configurable": {"session_id": "demo"}} - } + {"input": "Move the validate_email function to validation_utils.py"}, + config={"configurable": {"session_id": "demo"}} ) # Rename a class and update all references result = agent.invoke( - { - "input": "Rename the UserModel class to User and update all imports", - "config": {"configurable": {"session_id": "demo"}} - } + {"input": "Rename the UserModel class to User and update all imports"}, + config={"configurable": {"session_id": "demo"}} ) # Add error handling result = agent.invoke( - { - "input": "Add proper error handling to the process_data function", - "config": {"configurable": {"session_id": "demo"}} - } + {"input": "Add proper error handling to the process_data function"}, + config={"configurable": {"session_id": "demo"}} ) ``` @@ -164,6 +152,6 @@ tools.append(CustomCodeTool()) agent = create_codebase_agent( codebase=codebase, tools=tools, - model_name="gpt-4" + model_name="gpt-4o" ) ``` From 4063bc598c06b50816cfbc739398a7b5655b8d63 Mon Sep 17 00:00:00 2001 From: Jay Hack Date: Sat, 15 Feb 2025 23:09:45 -0800 Subject: [PATCH 18/33] Update overview.mdx --- docs/introduction/overview.mdx | 5 +---- 1 file changed, 1 insertion(+), 4 deletions(-) diff --git a/docs/introduction/overview.mdx b/docs/introduction/overview.mdx index db7d8dffa..cb10dc206 100644 --- a/docs/introduction/overview.mdx +++ b/docs/introduction/overview.mdx @@ -35,12 +35,9 @@ Codegen handles complex refactors while maintaining correctness, enabling a broa Codegen works with both Python and Typescript/JSX codebases. Learn more about language support [here](/building-with-codegen/language-support). ## Installation +Codegen requires Python 3.13 ```bash -# Install CLI -uv tool install codegen - -# Install inside existing project pip install codegen ``` From 27f08995c1f9961c53f0cb2ef8ddf0d5b4c58886 Mon Sep 17 00:00:00 2001 From: Jay Hack Date: Sat, 15 Feb 2025 23:12:22 -0800 Subject: [PATCH 19/33] Update deep-code-research.mdx --- docs/tutorials/deep-code-research.mdx | 7 +++++-- 1 file changed, 5 insertions(+), 2 deletions(-) diff --git a/docs/tutorials/deep-code-research.mdx b/docs/tutorials/deep-code-research.mdx index e4a5119ac..5a7b5f285 100644 --- a/docs/tutorials/deep-code-research.mdx +++ b/docs/tutorials/deep-code-research.mdx @@ -133,7 +133,10 @@ def research(repo_name: Optional[str] = None, query: Optional[str] = None): if not query: query = Prompt.ask("[bold cyan]Research query[/bold cyan]") - result = agent.invoke({"input": query}) + result = agent.invoke( + {"input": query}, + config={"configurable": {"session_id": "research"}} + ) console.print(Markdown(result["output"])) query = None # Clear for next iteration @@ -209,4 +212,4 @@ agent = create_agent_with_tools( tools=tools, chat_history=[SystemMessage(content=CUSTOM_PROMPT)], ) -``` \ No newline at end of file +``` From e913729c1ddb2767b6c6b39df263d605dc4bafa5 Mon Sep 17 00:00:00 2001 From: Jay Hack Date: Sun, 16 Feb 2025 01:05:29 -0800 Subject: [PATCH 20/33] feat: enables github webhooks (#518) --- src/codegen/extensions/events/app.py | 3 + src/codegen/extensions/events/github.py | 123 ++++++++++++++++++ src/codegen/extensions/events/github_types.py | 62 +++++++++ src/codegen/extensions/github/__init__.py | 0 .../extensions/github/types/__init__.py | 0 src/codegen/extensions/github/types/author.py | 7 + src/codegen/extensions/github/types/base.py | 68 ++++++++++ src/codegen/extensions/github/types/commit.py | 17 +++ .../extensions/github/types/enterprise.py | 14 ++ .../github/types/events/pull_request.py | 31 +++++ .../extensions/github/types/events/push.py | 27 ++++ .../extensions/github/types/installation.py | 6 + src/codegen/extensions/github/types/label.py | 11 ++ .../extensions/github/types/organization.py | 16 +++ .../extensions/github/types/pull_request.py | 71 ++++++++++ src/codegen/extensions/github/types/push.py | 29 +++++ src/codegen/extensions/github/types/pusher.py | 6 + 17 files changed, 491 insertions(+) create mode 100644 src/codegen/extensions/events/github.py create mode 100644 src/codegen/extensions/events/github_types.py create mode 100644 src/codegen/extensions/github/__init__.py create mode 100644 src/codegen/extensions/github/types/__init__.py create mode 100644 src/codegen/extensions/github/types/author.py create mode 100644 src/codegen/extensions/github/types/base.py create mode 100644 src/codegen/extensions/github/types/commit.py create mode 100644 src/codegen/extensions/github/types/enterprise.py create mode 100644 src/codegen/extensions/github/types/events/pull_request.py create mode 100644 src/codegen/extensions/github/types/events/push.py create mode 100644 src/codegen/extensions/github/types/installation.py create mode 100644 src/codegen/extensions/github/types/label.py create mode 100644 src/codegen/extensions/github/types/organization.py create mode 100644 src/codegen/extensions/github/types/pull_request.py create mode 100644 src/codegen/extensions/github/types/push.py create mode 100644 src/codegen/extensions/github/types/pusher.py diff --git a/src/codegen/extensions/events/app.py b/src/codegen/extensions/events/app.py index 3e004e366..ca889d727 100644 --- a/src/codegen/extensions/events/app.py +++ b/src/codegen/extensions/events/app.py @@ -2,6 +2,7 @@ import modal # deptry: ignore +from codegen.extensions.events.github import GitHub from codegen.extensions.events.linear import Linear from codegen.extensions.events.slack import Slack @@ -11,6 +12,7 @@ class CodegenApp(modal.App): linear: Linear slack: Slack + github: GitHub def __init__(self, name: str, modal_api_key: str, image: modal.Image): self._modal_api_key = modal_api_key @@ -22,3 +24,4 @@ def __init__(self, name: str, modal_api_key: str, image: modal.Image): # Expose attributes that provide event decorators for different providers. self.linear = Linear(self) self.slack = Slack(self) + self.github = GitHub(self) diff --git a/src/codegen/extensions/events/github.py b/src/codegen/extensions/events/github.py new file mode 100644 index 000000000..0c899ebb7 --- /dev/null +++ b/src/codegen/extensions/events/github.py @@ -0,0 +1,123 @@ +import logging +from typing import Any, Callable, TypeVar + +from fastapi import Request +from pydantic import BaseModel + +from codegen.extensions.events.interface import EventHandlerManagerProtocol +from codegen.extensions.github.types.base import GitHubInstallation, GitHubWebhookPayload + +logger = logging.getLogger(__name__) +logger.setLevel(logging.DEBUG) + + +# Type variable for event types +T = TypeVar("T", bound=BaseModel) + + +class GitHub(EventHandlerManagerProtocol): + def __init__(self, app): + self.app = app + self.registered_handlers = {} + + # TODO - add in client info + # @property + # def client(self) -> Github: + # if not self._client: + # self._client = Github(os.environ["GITHUB_TOKEN"]) + # return self._client + + def unsubscribe_all_handlers(self): + logger.info("[HANDLERS] Clearing all handlers") + self.registered_handlers.clear() + + def event(self, event_name: str): + """Decorator for registering a GitHub event handler. + + Example: + @app.github.event('push') + def handle_push(event: PushEvent): # Can be typed with Pydantic model + logger.info(f"Received push to {event.ref}") + + @app.github.event('pull_request:opened') + def handle_pr(event: dict): # Or just use dict for raw event + logger.info(f"Received PR") + """ + logger.info(f"[EVENT] Registering handler for {event_name}") + + def register_handler(func: Callable[[T], Any]): + # Get the type annotation from the first parameter + event_type = func.__annotations__.get("event") + func_name = func.__qualname__ + logger.info(f"[EVENT] Registering function {func_name} for {event_name}") + + def new_func(raw_event: dict): + # Only validate if a Pydantic model was specified + if event_type and issubclass(event_type, BaseModel): + try: + parsed_event = event_type.model_validate(raw_event) + return func(parsed_event) + except Exception as e: + logger.exception(f"Error parsing event: {e}") + raise + else: + # Pass through raw dict if no type validation needed + return func(raw_event) + + self.registered_handlers[event_name] = new_func + return new_func + + return register_handler + + def handle(self, event: dict, request: Request): + """Handle both webhook events and installation callbacks.""" + logger.info("[HANDLER] Handling GitHub event") + + # Check if this is an installation event + if "installation_id" in event and "code" in event: + installation = GitHubInstallation.model_validate(event) + logger.info("=====[GITHUB APP INSTALLATION]=====") + logger.info(f"Code: {installation.code}") + logger.info(f"Installation ID: {installation.installation_id}") + logger.info(f"Setup Action: {installation.setup_action}") + return { + "message": "GitHub app installation details received", + "details": { + "code": installation.code, + "installation_id": installation.installation_id, + "setup_action": installation.setup_action, + }, + } + + # Extract headers for webhook events + headers = { + "x-github-event": request.headers.get("x-github-event"), + "x-github-delivery": request.headers.get("x-github-delivery"), + "x-github-hook-id": request.headers.get("x-github-hook-id"), + "x-github-hook-installation-target-id": request.headers.get("x-github-hook-installation-target-id"), + "x-github-hook-installation-target-type": request.headers.get("x-github-hook-installation-target-type"), + } + print(headers) + + # Handle webhook events + try: + webhook = GitHubWebhookPayload.model_validate({"headers": headers, "event": event}) + + # Get base event type and action + event_type = webhook.headers.event_type + action = webhook.event.action + + # Combine event type and action if both exist + full_event_type = f"{event_type}:{action}" if action else event_type + + if full_event_type not in self.registered_handlers: + logger.info(f"[HANDLER] No handler found for event type: {full_event_type}") + return {"message": "Event type not handled"} + + else: + logger.info(f"[HANDLER] Handling event: {full_event_type}") + handler = self.registered_handlers[full_event_type] + return handler(event) # TODO - pass through typed values + except Exception as e: + logger.exception(f"Error handling webhook: {e}") + raise diff --git a/src/codegen/extensions/events/github_types.py b/src/codegen/extensions/events/github_types.py new file mode 100644 index 000000000..fd3f62536 --- /dev/null +++ b/src/codegen/extensions/events/github_types.py @@ -0,0 +1,62 @@ +from datetime import datetime +from typing import Optional + + +class GitHubRepository: + id: int + node_id: str + name: str + full_name: str + private: bool + + +class GitHubAccount: + login: str + id: int + node_id: str + avatar_url: str + type: str + site_admin: bool + # Other URL fields omitted for brevity + user_view_type: str + + +class GitHubInstallation: + id: int + client_id: str + account: GitHubAccount + repository_selection: str + access_tokens_url: str + repositories_url: str + html_url: str + app_id: int + app_slug: str + target_id: int + target_type: str + permissions: dict[str, str] # e.g. {'actions': 'write', 'checks': 'read', ...} + events: list[str] + created_at: datetime + updated_at: datetime + single_file_name: Optional[str] + has_multiple_single_files: bool + single_file_paths: list[str] + suspended_by: Optional[str] + suspended_at: Optional[datetime] + + +class GitHubUser: + login: str + id: int + node_id: str + avatar_url: str + type: str + site_admin: bool + # Other URL fields omitted for brevity + + +class GitHubInstallationEvent: + action: str + installation: GitHubInstallation + repositories: list[GitHubRepository] + requester: Optional[dict] + sender: GitHubUser diff --git a/src/codegen/extensions/github/__init__.py b/src/codegen/extensions/github/__init__.py new file mode 100644 index 000000000..e69de29bb diff --git a/src/codegen/extensions/github/types/__init__.py b/src/codegen/extensions/github/types/__init__.py new file mode 100644 index 000000000..e69de29bb diff --git a/src/codegen/extensions/github/types/author.py b/src/codegen/extensions/github/types/author.py new file mode 100644 index 000000000..2ecdd2e8a --- /dev/null +++ b/src/codegen/extensions/github/types/author.py @@ -0,0 +1,7 @@ +from pydantic import BaseModel + + +class GitHubAuthor(BaseModel): + name: str + email: str + username: str diff --git a/src/codegen/extensions/github/types/base.py b/src/codegen/extensions/github/types/base.py new file mode 100644 index 000000000..8c6bef223 --- /dev/null +++ b/src/codegen/extensions/github/types/base.py @@ -0,0 +1,68 @@ +from pydantic import BaseModel, Field + + +class GitHubUser(BaseModel): + login: str + id: int + node_id: str + type: str + + +class GitHubRepository(BaseModel): + id: int + node_id: str + name: str + full_name: str + private: bool + owner: GitHubUser + + +class GitHubIssue(BaseModel): + id: int + node_id: str + number: int + title: str + body: str | None + user: GitHubUser + state: str + comments: int + + +class GitHubPullRequest(BaseModel): + id: int + node_id: str + number: int + title: str + body: str | None + user: GitHubUser + state: str + head: dict + base: dict + merged: bool | None = None + + +class GitHubEvent(BaseModel): + action: str | None = None + issue: GitHubIssue | None = None + pull_request: GitHubPullRequest | None = None + repository: GitHubRepository + sender: GitHubUser + + +class GitHubWebhookHeaders(BaseModel): + event_type: str = Field(..., alias="x-github-event") + delivery_id: str = Field(..., alias="x-github-delivery") + hook_id: str = Field(..., alias="x-github-hook-id") + installation_target_id: str = Field(..., alias="x-github-hook-installation-target-id") + installation_target_type: str = Field(..., alias="x-github-hook-installation-target-type") + + +class GitHubWebhookPayload(BaseModel): + headers: GitHubWebhookHeaders + event: GitHubEvent + + +class GitHubInstallation(BaseModel): + code: str + installation_id: str + setup_action: str = "install" diff --git a/src/codegen/extensions/github/types/commit.py b/src/codegen/extensions/github/types/commit.py new file mode 100644 index 000000000..9fa27052f --- /dev/null +++ b/src/codegen/extensions/github/types/commit.py @@ -0,0 +1,17 @@ +from pydantic import BaseModel + +from .author import GitHubAuthor + + +class GitHubCommit(BaseModel): + id: str + tree_id: str + distinct: bool + message: str + timestamp: str + url: str + author: GitHubAuthor + committer: GitHubAuthor + added: list[str] + removed: list[str] + modified: list[str] diff --git a/src/codegen/extensions/github/types/enterprise.py b/src/codegen/extensions/github/types/enterprise.py new file mode 100644 index 000000000..ed4861ad9 --- /dev/null +++ b/src/codegen/extensions/github/types/enterprise.py @@ -0,0 +1,14 @@ +from pydantic import BaseModel + + +class GitHubEnterprise(BaseModel): + id: int + slug: str + name: str + node_id: str + avatar_url: str + description: str + website_url: str + html_url: str + created_at: str + updated_at: str diff --git a/src/codegen/extensions/github/types/events/pull_request.py b/src/codegen/extensions/github/types/events/pull_request.py new file mode 100644 index 000000000..13cae72c7 --- /dev/null +++ b/src/codegen/extensions/github/types/events/pull_request.py @@ -0,0 +1,31 @@ +from pydantic import BaseModel + +from ..base import GitHubRepository, GitHubUser +from ..enterprise import GitHubEnterprise +from ..installation import GitHubInstallation +from ..label import GitHubLabel +from ..organization import GitHubOrganization +from ..pull_request import PullRequest + + +class PullRequestLabeledEvent(BaseModel): + action: str # Will be "labeled" + number: int + pull_request: PullRequest + label: GitHubLabel + repository: GitHubRepository + organization: GitHubOrganization + enterprise: GitHubEnterprise + sender: GitHubUser + installation: GitHubInstallation + + +class PullRequestOpenedEvent(BaseModel): + action: str = "opened" # Always "opened" for this event + number: int + pull_request: PullRequest + repository: GitHubRepository + organization: GitHubOrganization + enterprise: GitHubEnterprise + sender: GitHubUser + installation: GitHubInstallation diff --git a/src/codegen/extensions/github/types/events/push.py b/src/codegen/extensions/github/types/events/push.py new file mode 100644 index 000000000..e5202a978 --- /dev/null +++ b/src/codegen/extensions/github/types/events/push.py @@ -0,0 +1,27 @@ +from pydantic import BaseModel + +from ..base import GitHubRepository, GitHubUser +from ..commit import GitHubCommit +from ..enterprise import GitHubEnterprise +from ..installation import GitHubInstallation +from ..organization import GitHubOrganization +from ..pusher import GitHubPusher + + +class PushEvent(BaseModel): + ref: str + before: str + after: str + repository: GitHubRepository + pusher: GitHubPusher + organization: GitHubOrganization + enterprise: GitHubEnterprise + sender: GitHubUser + installation: GitHubInstallation + created: bool + deleted: bool + forced: bool + base_ref: str | None = None + compare: str + commits: list[GitHubCommit] + head_commit: GitHubCommit diff --git a/src/codegen/extensions/github/types/installation.py b/src/codegen/extensions/github/types/installation.py new file mode 100644 index 000000000..5b8e2b9cf --- /dev/null +++ b/src/codegen/extensions/github/types/installation.py @@ -0,0 +1,6 @@ +from pydantic import BaseModel + + +class GitHubInstallation(BaseModel): + id: int + node_id: str diff --git a/src/codegen/extensions/github/types/label.py b/src/codegen/extensions/github/types/label.py new file mode 100644 index 000000000..1d91f32f9 --- /dev/null +++ b/src/codegen/extensions/github/types/label.py @@ -0,0 +1,11 @@ +from pydantic import BaseModel + + +class GitHubLabel(BaseModel): + id: int + node_id: str + url: str + name: str + color: str + default: bool + description: str | None diff --git a/src/codegen/extensions/github/types/organization.py b/src/codegen/extensions/github/types/organization.py new file mode 100644 index 000000000..56b64e950 --- /dev/null +++ b/src/codegen/extensions/github/types/organization.py @@ -0,0 +1,16 @@ +from pydantic import BaseModel + + +class GitHubOrganization(BaseModel): + login: str + id: int + node_id: str + url: str + repos_url: str + events_url: str + hooks_url: str + issues_url: str + members_url: str + public_members_url: str + avatar_url: str + description: str diff --git a/src/codegen/extensions/github/types/pull_request.py b/src/codegen/extensions/github/types/pull_request.py new file mode 100644 index 000000000..3ad03dca1 --- /dev/null +++ b/src/codegen/extensions/github/types/pull_request.py @@ -0,0 +1,71 @@ +from typing import Optional + +from pydantic import BaseModel + +from .base import GitHubRepository, GitHubUser +from .label import GitHubLabel + + +class PullRequestRef(BaseModel): + label: str + ref: str + sha: str + user: GitHubUser + repo: GitHubRepository + + +class PullRequestLinks(BaseModel): + self: dict + html: dict + issue: dict + comments: dict + review_comments: dict + review_comment: dict + commits: dict + statuses: dict + + +class PullRequest(BaseModel): + url: str + id: int + node_id: str + html_url: str + diff_url: str + patch_url: str + issue_url: str + number: int + state: str + locked: bool + title: str + user: GitHubUser + body: Optional[str] + created_at: str + updated_at: str + closed_at: Optional[str] + merged_at: Optional[str] + merge_commit_sha: str + assignee: Optional[GitHubUser] + assignees: list[GitHubUser] + requested_reviewers: list[GitHubUser] + requested_teams: list[dict] + labels: list[GitHubLabel] + milestone: Optional[dict] + draft: bool + head: PullRequestRef + base: PullRequestRef + _links: PullRequestLinks + author_association: str + auto_merge: Optional[dict] + active_lock_reason: Optional[str] + merged: bool + mergeable: Optional[bool] + rebaseable: Optional[bool] + mergeable_state: str + merged_by: Optional[GitHubUser] + comments: int + review_comments: int + maintainer_can_modify: bool + commits: int + additions: int + deletions: int + changed_files: int diff --git a/src/codegen/extensions/github/types/push.py b/src/codegen/extensions/github/types/push.py new file mode 100644 index 000000000..10f44f5e7 --- /dev/null +++ b/src/codegen/extensions/github/types/push.py @@ -0,0 +1,29 @@ +from typing import Optional + +from pydantic import BaseModel + +from .base import GitHubRepository, GitHubUser +from .commit import GitHubCommit +from .enterprise import GitHubEnterprise +from .installation import GitHubInstallation +from .organization import GitHubOrganization +from .pusher import GitHubPusher + + +class PushEvent(BaseModel): + ref: str + before: str + after: str + repository: GitHubRepository + pusher: GitHubPusher + organization: GitHubOrganization + enterprise: GitHubEnterprise + sender: GitHubUser + installation: GitHubInstallation + created: bool + deleted: bool + forced: bool + base_ref: Optional[str] + compare: str + commits: list[GitHubCommit] + head_commit: GitHubCommit diff --git a/src/codegen/extensions/github/types/pusher.py b/src/codegen/extensions/github/types/pusher.py new file mode 100644 index 000000000..2d52056d4 --- /dev/null +++ b/src/codegen/extensions/github/types/pusher.py @@ -0,0 +1,6 @@ +from pydantic import BaseModel + + +class GitHubPusher(BaseModel): + name: str + email: str From f7ee186a3d3e5e21252d7ca21aa21559c5238df0 Mon Sep 17 00:00:00 2001 From: Jay Hack Date: Sun, 16 Feb 2025 01:30:41 -0800 Subject: [PATCH 21/33] fix: relaxes gh types (#519) --- src/codegen/extensions/github/types/events/push.py | 2 +- src/codegen/extensions/github/types/pull_request.py | 2 +- 2 files changed, 2 insertions(+), 2 deletions(-) diff --git a/src/codegen/extensions/github/types/events/push.py b/src/codegen/extensions/github/types/events/push.py index e5202a978..c3a7799bf 100644 --- a/src/codegen/extensions/github/types/events/push.py +++ b/src/codegen/extensions/github/types/events/push.py @@ -24,4 +24,4 @@ class PushEvent(BaseModel): base_ref: str | None = None compare: str commits: list[GitHubCommit] - head_commit: GitHubCommit + head_commit: GitHubCommit | None = None diff --git a/src/codegen/extensions/github/types/pull_request.py b/src/codegen/extensions/github/types/pull_request.py index 3ad03dca1..50228d3d6 100644 --- a/src/codegen/extensions/github/types/pull_request.py +++ b/src/codegen/extensions/github/types/pull_request.py @@ -43,7 +43,7 @@ class PullRequest(BaseModel): updated_at: str closed_at: Optional[str] merged_at: Optional[str] - merge_commit_sha: str + merge_commit_sha: Optional[str] assignee: Optional[GitHubUser] assignees: list[GitHubUser] requested_reviewers: list[GitHubUser] From 2f864d91311cf2eed8b288ef8505ee557fe07226 Mon Sep 17 00:00:00 2001 From: Jay Hack Date: Sun, 16 Feb 2025 10:28:40 -0800 Subject: [PATCH 22/33] feat: agent cli (#520) --- src/codegen/cli/cli.py | 2 + src/codegen/cli/commands/agent/main.py | 125 +++++++++++++++++++++++++ 2 files changed, 127 insertions(+) create mode 100644 src/codegen/cli/commands/agent/main.py diff --git a/src/codegen/cli/cli.py b/src/codegen/cli/cli.py index b78801a07..465872c36 100644 --- a/src/codegen/cli/cli.py +++ b/src/codegen/cli/cli.py @@ -1,6 +1,7 @@ import rich_click as click from rich.traceback import install +from codegen.cli.commands.agent.main import agent_command from codegen.cli.commands.config.main import config_command from codegen.cli.commands.create.main import create_command from codegen.cli.commands.deploy.main import deploy_command @@ -29,6 +30,7 @@ def main(): # Wrap commands with error handler +main.add_command(agent_command) main.add_command(init_command) main.add_command(logout_command) main.add_command(login_command) diff --git a/src/codegen/cli/commands/agent/main.py b/src/codegen/cli/commands/agent/main.py new file mode 100644 index 000000000..acf3b4a84 --- /dev/null +++ b/src/codegen/cli/commands/agent/main.py @@ -0,0 +1,125 @@ +import uuid +import warnings + +import rich_click as click +from langchain_core.messages import AIMessage, HumanMessage, SystemMessage +from rich.console import Console +from rich.markdown import Markdown +from rich.prompt import Prompt + +from codegen import Codebase +from codegen.extensions.langchain.agent import create_agent_with_tools +from codegen.extensions.langchain.tools import ( + CreateFileTool, + DeleteFileTool, + EditFileTool, + ListDirectoryTool, + MoveSymbolTool, + RenameFileTool, + RevealSymbolTool, + SearchTool, + ViewFileTool, +) + +# Suppress specific warnings +warnings.filterwarnings("ignore", message=".*Helicone.*") +warnings.filterwarnings("ignore", message=".*LangSmith.*") +warnings.filterwarnings("ignore", category=DeprecationWarning) + +console = Console() + +WELCOME_ART = r"""[bold blue] + ____ _ + / ___|___ __| | ___ __ _ ___ _ __ + | | / _ \ / _` |/ _ \/ _` |/ _ \ '_ \ + | |__| (_) | (_| | __/ (_| | __/ | | | + \____\___/ \__,_|\___|\__, |\___|_| |_| + |___/ + +[/bold blue] +""" + + +@click.command(name="agent") +@click.option("--query", "-q", default=None, help="Initial query for the agent.") +def agent_command(query: str): + """Start an interactive chat session with the Codegen AI agent.""" + # Show welcome message + console.print(WELCOME_ART) + + # Initialize codebase from current directory + with console.status("[bold green]Initializing codebase...[/bold green]"): + codebase = Codebase("./") + + # Helper function for agent to print messages + def say(message: str): + console.print() # Add blank line before message + markdown = Markdown(message) + console.print(markdown) + console.print() # Add blank line after message + + # Initialize tools + tools = [ + ViewFileTool(codebase), + ListDirectoryTool(codebase), + SearchTool(codebase), + CreateFileTool(codebase), + DeleteFileTool(codebase), + RenameFileTool(codebase), + MoveSymbolTool(codebase), + RevealSymbolTool(codebase), + EditFileTool(codebase), + # RunBashCommandTool(codebase), + ] + + # Initialize chat history with system message + chat_history = [ + SystemMessage( + content="""You are a helpful AI assistant with access to the local codebase. +You can help with code exploration, editing, and general programming tasks. +Always explain what you're planning to do before taking actions.""" + ) + ] + + # Get initial query if not provided via command line + if not query: + console.print("[bold]Welcome to the Codegen CLI Agent![/bold]") + console.print("I'm an AI assistant that can help you explore and modify code in this repository.") + console.print("I can help with tasks like viewing files, searching code, making edits, and more.") + console.print() + console.print("What would you like help with today?") + console.print() + query = Prompt.ask("[bold]>[/bold]") # Simple arrow prompt + + # Create the agent + agent = create_agent_with_tools(codebase, tools, chat_history=chat_history) + + # Main chat loop + while True: + if not query: # Only prompt for subsequent messages + user_input = Prompt.ask("\n[bold]>[/bold]") # Simple arrow prompt + else: + user_input = query + query = None # Clear the initial query so we enter the prompt flow + + if user_input.lower() in ["exit", "quit"]: + break + + # Add user message to chat history + chat_history.append(HumanMessage(content=user_input)) + + # Invoke the agent + with console.status("[bold green]Agent is thinking...") as status: + try: + session_id = str(uuid.uuid4()) + result = agent.invoke( + {"input": user_input}, + config={"configurable": {"session_id": session_id}}, + ) + # Update chat history with AI's response + if result.get("output"): + say(result["output"]) + chat_history.append(AIMessage(content=result["output"])) + except Exception as e: + console.print(f"[bold red]Error during agent execution:[/bold red] {e}") + break From 3a60bdacb468113bcb5bf7c71a8cbf59563b4636 Mon Sep 17 00:00:00 2001 From: "renovate[bot]" <29139614+renovate[bot]@users.noreply.github.com> Date: Mon, 17 Feb 2025 01:44:15 +0000 Subject: [PATCH 23/33] chore(deps): lock file maintenance (#524) MIME-Version: 1.0 Content-Type: text/plain; charset=UTF-8 Content-Transfer-Encoding: 8bit This PR contains the following updates: | Update | Change | |---|---| | lockFileMaintenance | All locks refreshed | 🔧 This Pull Request updates lock files to use the latest dependency versions. --- ### Configuration 📅 **Schedule**: Branch creation - "* 0-3 * * 1" (UTC), Automerge - "* 0-3 * * 1" (UTC). 🚦 **Automerge**: Enabled. ♻ **Rebasing**: Whenever PR is behind base branch, or you tick the rebase/retry checkbox. 👻 **Immortal**: This PR will be recreated if closed unmerged. Get [config help](https://redirect.github.com/renovatebot/renovate/discussions) if that's undesired. --- - [ ] If you want to rebase/retry this PR, check this box --- This PR was generated by [Mend Renovate](https://mend.io/renovate/). View the [repository job log](https://developer.mend.io/github/codegen-sh/codegen-sdk). Co-authored-by: renovate[bot] <29139614+renovate[bot]@users.noreply.github.com> --- codegen-examples/uv.lock | 520 +++++++++++++++++++++++++++------------ uv.lock | 160 ++++++------ 2 files changed, 450 insertions(+), 230 deletions(-) diff --git a/codegen-examples/uv.lock b/codegen-examples/uv.lock index 8adfeec4b..152d3beaa 100644 --- a/codegen-examples/uv.lock +++ b/codegen-examples/uv.lock @@ -1,4 +1,5 @@ version = 1 +revision = 1 requires-python = ">=3.12, <3.14" resolution-markers = [ "python_full_version >= '3.12.4'", @@ -400,7 +401,7 @@ wheels = [ [[package]] name = "codegen" -version = "0.6.2" +version = "0.20.0" source = { registry = "https://pypi.org/simple" } dependencies = [ { name = "anthropic" }, @@ -422,10 +423,14 @@ dependencies = [ { name = "langchain-core" }, { name = "langchain-openai" }, { name = "lazy-object-proxy" }, + { name = "mcp", extra = ["cli"] }, { name = "mini-racer" }, + { name = "modal" }, + { name = "neo4j" }, { name = "networkx" }, { name = "numpy" }, 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Please use `traces_sample_rate` instead. See https://docs.sentry.io/platforms/python/configuration/options/#traces_sample_rate for more information. - Explicitly use `None` default when checking metadata ([#​4039](https://redirect.github.com/getsentry/sentry-python/issues/4039)) by [@​mpurnell1](https://redirect.github.com/mpurnell1) - Fix bug where concurrent accesses to the flags property could raise a `RuntimeError` ([#​4034](https://redirect.github.com/getsentry/sentry-python/issues/4034)) by [@​cmanallen](https://redirect.github.com/cmanallen) - Add more min versions of frameworks ([#​3973](https://redirect.github.com/getsentry/sentry-python/issues/3973)) by [@​sentrivana](https://redirect.github.com/sentrivana) - Set level based on status code for HTTP client breadcrumbs ([#​4004](https://redirect.github.com/getsentry/sentry-python/issues/4004)) by [@​sentrivana](https://redirect.github.com/sentrivana) - Don't set transaction status to error on `sys.exit(0)` ([#​4025](https://redirect.github.com/getsentry/sentry-python/issues/4025)) by [@​sentrivana](https://redirect.github.com/sentrivana) - Continuous profiling sample rate ([#​4002](https://redirect.github.com/getsentry/sentry-python/issues/4002)) by [@​Zylphrex](https://redirect.github.com/Zylphrex) Set `profile_session_sample_rate=1.0` in your `init()` to collect continuous profiles for 100% of profile sessions. See https://docs.sentry.io/platforms/python/profiling/#enable-continuous-profiling for more information. - Track and report spans that were dropped ([#​4005](https://redirect.github.com/getsentry/sentry-python/issues/4005)) by [@​constantinius](https://redirect.github.com/constantinius) - Change continuous profile buffer size ([#​3987](https://redirect.github.com/getsentry/sentry-python/issues/3987)) by [@​Zylphrex](https://redirect.github.com/Zylphrex) - Handle `MultiPartParserError` to avoid internal sentry crash ([#​4001](https://redirect.github.com/getsentry/sentry-python/issues/4001)) by [@​orhanhenrik](https://redirect.github.com/orhanhenrik) - Handle `None` lineno in `get_source_context` ([#​3925](https://redirect.github.com/getsentry/sentry-python/issues/3925)) by [@​sentrivana](https://redirect.github.com/sentrivana) - Add support for Python 3.12 and 3.13 to AWS Lambda integration ([#​3965](https://redirect.github.com/getsentry/sentry-python/issues/3965)) by [@​antonpirker](https://redirect.github.com/antonpirker) - Add `propagate_traces` deprecation warning ([#​3899](https://redirect.github.com/getsentry/sentry-python/issues/3899)) by [@​mgaligniana](https://redirect.github.com/mgaligniana) - Check that `__module__` is `str` ([#​3942](https://redirect.github.com/getsentry/sentry-python/issues/3942)) by [@​szokeasaurusrex](https://redirect.github.com/szokeasaurusrex) - Add `__repr__` to `Baggage` ([#​4043](https://redirect.github.com/getsentry/sentry-python/issues/4043)) by [@​szokeasaurusrex](https://redirect.github.com/szokeasaurusrex) - Fix a typo ([#​3923](https://redirect.github.com/getsentry/sentry-python/issues/3923)) by [@​antonpirker](https://redirect.github.com/antonpirker) - Fix various CI errors on master ([#​4009](https://redirect.github.com/getsentry/sentry-python/issues/4009)) by [@​Zylphrex](https://redirect.github.com/Zylphrex) - Split gevent tests off ([#​3964](https://redirect.github.com/getsentry/sentry-python/issues/3964)) by [@​sentrivana](https://redirect.github.com/sentrivana) - Add tox generation script, but don't use it yet ([#​3971](https://redirect.github.com/getsentry/sentry-python/issues/3971)) by [@​sentrivana](https://redirect.github.com/sentrivana) - Use `httpx_mock` in `test_httpx` ([#​3967](https://redirect.github.com/getsentry/sentry-python/issues/3967)) by [@​sl0thentr0py](https://redirect.github.com/sl0thentr0py) - Fix typo in test name ([#​4036](https://redirect.github.com/getsentry/sentry-python/issues/4036)) by [@​szokeasaurusrex](https://redirect.github.com/szokeasaurusrex) - Fix mypy ([#​4019](https://redirect.github.com/getsentry/sentry-python/issues/4019)) by [@​sentrivana](https://redirect.github.com/sentrivana) - Test Celery's latest RC ([#​3938](https://redirect.github.com/getsentry/sentry-python/issues/3938)) by [@​sentrivana](https://redirect.github.com/sentrivana) - Bump `actions/create-github-app-token` from `1.11.2` to `1.11.3` ([#​4023](https://redirect.github.com/getsentry/sentry-python/issues/4023)) by [@​dependabot](https://redirect.github.com/dependabot) - Bump `actions/create-github-app-token` from `1.11.1` to `1.11.2` ([#​4015](https://redirect.github.com/getsentry/sentry-python/issues/4015)) by [@​dependabot](https://redirect.github.com/dependabot) - Bump `codecov/codecov-action` from `5.1.2` to `5.3.1` ([#​3995](https://redirect.github.com/getsentry/sentry-python/issues/3995)) by [@​dependabot](https://redirect.github.com/dependabot)
--- ### Configuration 📅 **Schedule**: Branch creation - At any time (no schedule defined), Automerge - "* 0-3 * * 1" (UTC). 🚦 **Automerge**: Enabled. ♻ **Rebasing**: Whenever PR is behind base branch, or you tick the rebase/retry checkbox. 🔕 **Ignore**: Close this PR and you won't be reminded about this update again. --- - [ ] If you want to rebase/retry this PR, check this box --- This PR was generated by [Mend Renovate](https://mend.io/renovate/). View the [repository job log](https://developer.mend.io/github/codegen-sh/codegen-sdk). Co-authored-by: renovate[bot] <29139614+renovate[bot]@users.noreply.github.com> --- pyproject.toml | 2 +- 1 file changed, 1 insertion(+), 1 deletion(-) diff --git a/pyproject.toml b/pyproject.toml index cddde40bd..c64e637ef 100644 --- a/pyproject.toml +++ b/pyproject.toml @@ -37,7 +37,7 @@ dependencies = [ "rustworkx>=0.15.1", "typing-extensions>=4.12.2", "termcolor>=2.4.0", - "sentry-sdk==2.20.0", + "sentry-sdk==2.22.0", "tenacity>=9.0.0", "click>=8.1.7", "requests>=2.32.3", From 2bac505dda5ca76159abeec6144086967fd818da Mon Sep 17 00:00:00 2001 From: "renovate[bot]" <29139614+renovate[bot]@users.noreply.github.com> Date: Mon, 17 Feb 2025 17:53:17 +0000 Subject: [PATCH 26/33] fix(deps): update dependency openai to v1.63.2 (#526) MIME-Version: 1.0 Content-Type: text/plain; charset=UTF-8 Content-Transfer-Encoding: 8bit This PR contains the following updates: | Package | Change | Age | Adoption | Passing | Confidence | |---|---|---|---|---|---| | [openai](https://redirect.github.com/openai/openai-python) | `==1.63.1` -> `==1.63.2` | [![age](https://developer.mend.io/api/mc/badges/age/pypi/openai/1.63.2?slim=true)](https://docs.renovatebot.com/merge-confidence/) | [![adoption](https://developer.mend.io/api/mc/badges/adoption/pypi/openai/1.63.2?slim=true)](https://docs.renovatebot.com/merge-confidence/) | [![passing](https://developer.mend.io/api/mc/badges/compatibility/pypi/openai/1.63.1/1.63.2?slim=true)](https://docs.renovatebot.com/merge-confidence/) | [![confidence](https://developer.mend.io/api/mc/badges/confidence/pypi/openai/1.63.1/1.63.2?slim=true)](https://docs.renovatebot.com/merge-confidence/) | --- ### Release Notes
openai/openai-python (openai) ### [`v1.63.2`](https://redirect.github.com/openai/openai-python/blob/HEAD/CHANGELOG.md#1632-2025-02-17) [Compare Source](https://redirect.github.com/openai/openai-python/compare/v1.63.1...v1.63.2) Full Changelog: [v1.63.1...v1.63.2](https://redirect.github.com/openai/openai-python/compare/v1.63.1...v1.63.2) ##### Chores - **internal:** revert temporary commit ([#​2121](https://redirect.github.com/openai/openai-python/issues/2121)) ([72458ab](https://redirect.github.com/openai/openai-python/commit/72458abeed3dd95db8aabed94a33bb12a916f8b7))
--- ### Configuration 📅 **Schedule**: Branch creation - At any time (no schedule defined), Automerge - "* 0-3 * * 1" (UTC). 🚦 **Automerge**: Enabled. ♻ **Rebasing**: Whenever PR is behind base branch, or you tick the rebase/retry checkbox. 🔕 **Ignore**: Close this PR and you won't be reminded about this update again. --- - [ ] If you want to rebase/retry this PR, check this box --- This PR was generated by [Mend Renovate](https://mend.io/renovate/). View the [repository job log](https://developer.mend.io/github/codegen-sh/codegen-sdk). Co-authored-by: renovate[bot] <29139614+renovate[bot]@users.noreply.github.com> --- pyproject.toml | 2 +- uv.lock | 16 ++++++++-------- 2 files changed, 9 insertions(+), 9 deletions(-) diff --git a/pyproject.toml b/pyproject.toml index c64e637ef..f76600a8d 100644 --- a/pyproject.toml +++ b/pyproject.toml @@ -7,7 +7,7 @@ readme = "README.md" requires-python = ">=3.12, <3.14" dependencies = [ "backoff==2.2.1", - "openai==1.63.1", + "openai==1.63.2", "tiktoken<1.0.0,>=0.5.1", "tabulate>=0.9.0,<1.0.0", "codeowners<1.0.0,>=0.6.0", diff --git a/uv.lock b/uv.lock index d1454d9d2..dc5051edb 100644 --- a/uv.lock +++ b/uv.lock @@ -688,7 +688,7 @@ requires-dist = [ { name = "neo4j" }, { name = "networkx", specifier = ">=3.4.1" }, { name = "numpy", specifier = ">=2.2.2" }, - { name = "openai", specifier = "==1.63.1" }, + { name = "openai", specifier = "==1.63.2" }, { name = "packaging", specifier = ">=24.2" }, { name = "pip", specifier = ">=24.3.1" }, { name = "plotly", specifier = ">=5.24.0,<7.0.0" }, @@ -710,7 +710,7 @@ requires-dist = [ { name = "rich", specifier = ">=13.7.1,<14.0.0" }, { name = "rich-click", specifier = ">=1.8.5" }, { name = "rustworkx", specifier = ">=0.15.1" }, - { name = "sentry-sdk", specifier = "==2.20.0" }, + { name = "sentry-sdk", specifier = "==2.22.0" }, { name = "slack-sdk" }, { name = "starlette", specifier = ">=0.16.0,<1.0.0" }, { name = "tabulate", specifier = ">=0.9.0,<1.0.0" }, @@ -2480,7 +2480,7 @@ wheels = [ [[package]] name = "openai" -version = "1.63.1" +version = "1.63.2" source = { registry = "https://pypi.org/simple" } dependencies = [ { name = "anyio" }, @@ -2492,9 +2492,9 @@ dependencies = [ { name = "tqdm" }, { name = "typing-extensions" }, ] -sdist = { url = "https://files.pythonhosted.org/packages/f3/f8/49c5fb79d5e8e33073a296e24ebc8023b038ec11c283d28199e38210f234/openai-1.63.1.tar.gz", hash = "sha256:79e53b16b3b26d151300364e0df69a863db73e85fbe117158f2639efca0d70e7", size = 356850 } +sdist = { url = "https://files.pythonhosted.org/packages/e6/1c/11b520deb71f9ea54ced3c52cd6a5f7131215deba63ad07f23982e328141/openai-1.63.2.tar.gz", hash = "sha256:aeabeec984a7d2957b4928ceaa339e2ead19c61cfcf35ae62b7c363368d26360", size = 356902 } wheels = [ - { url = "https://files.pythonhosted.org/packages/42/97/b7a362afdba2093853bea7e6dad33d930dd4bccbbe890532b0162db28733/openai-1.63.1-py3-none-any.whl", hash = "sha256:1e30a8131fbbd4859c104137cf152901870ba346060df1934a74a71ae330f071", size = 472282 }, + { url = "https://files.pythonhosted.org/packages/15/64/db3462b358072387b8e93e6e6a38d3c741a17b4a84171ef01d6c85c63f25/openai-1.63.2-py3-none-any.whl", hash = "sha256:1f38b27b5a40814c2b7d8759ec78110df58c4a614c25f182809ca52b080ff4d4", size = 472282 }, ] [[package]] @@ -3696,15 +3696,15 @@ wheels = [ [[package]] name = "sentry-sdk" -version = "2.20.0" +version = "2.22.0" source = { registry = "https://pypi.org/simple" } dependencies = [ { name = "certifi" }, { name = "urllib3" }, ] -sdist = { url = "https://files.pythonhosted.org/packages/68/e8/6a366c0cd5e129dda6ecb20ff097f70b18182c248d4c27e813c21f98992a/sentry_sdk-2.20.0.tar.gz", hash = "sha256:afa82713a92facf847df3c6f63cec71eb488d826a50965def3d7722aa6f0fdab", size = 300125 } +sdist = { url = "https://files.pythonhosted.org/packages/81/b6/662988ecd2345bf6c3a5c306a9a3590852742eff91d0a78a143398b816f3/sentry_sdk-2.22.0.tar.gz", hash = "sha256:b4bf43bb38f547c84b2eadcefbe389b36ef75f3f38253d7a74d6b928c07ae944", size = 303539 } wheels = [ - { url = "https://files.pythonhosted.org/packages/e6/0f/6f7e6cd0f4a141752caef3f79300148422fdf2b8b68b531f30b2b0c0cbda/sentry_sdk-2.20.0-py2.py3-none-any.whl", hash = "sha256:c359a1edf950eb5e80cffd7d9111f3dbeef57994cb4415df37d39fda2cf22364", size = 322576 }, + { url = "https://files.pythonhosted.org/packages/12/7f/0e4459173e9671ba5f75a48dda2442bcc48a12c79e54e5789381c8c6a9bc/sentry_sdk-2.22.0-py2.py3-none-any.whl", hash = "sha256:3d791d631a6c97aad4da7074081a57073126c69487560c6f8bffcf586461de66", size = 325815 }, ] [[package]] From 5d8f3fbbe6f58d88fe92b7257b75914b4e6f7a64 Mon Sep 17 00:00:00 2001 From: Vishal Shenoy Date: Mon, 17 Feb 2025 13:09:05 -0800 Subject: [PATCH 27/33] Remove Permalink (#525) --- docs/tutorials/fixing-import-loops-in-pytorch.mdx | 2 +- docs/tutorials/flask-to-fastapi.mdx | 2 +- docs/tutorials/python2-to-python3.mdx | 2 +- docs/tutorials/sqlalchemy-1.6-to-2.0.mdx | 2 +- docs/tutorials/training-data.mdx | 2 +- docs/tutorials/unittest-to-pytest.mdx | 2 +- 6 files changed, 6 insertions(+), 6 deletions(-) diff --git a/docs/tutorials/fixing-import-loops-in-pytorch.mdx b/docs/tutorials/fixing-import-loops-in-pytorch.mdx index b139c969f..2c9faf55d 100644 --- a/docs/tutorials/fixing-import-loops-in-pytorch.mdx +++ b/docs/tutorials/fixing-import-loops-in-pytorch.mdx @@ -23,7 +23,7 @@ Import loops occur when two or more Python modules depend on each other, creatin In this tutorial, we'll explore how to identify and fix problematic import cycles using Codegen. -You can find the complete example code in our [examples repository](https://github.com/codegen-sh/codegen-sdk/tree/93f0d4cd7740e3e01ee7ecfd69fd3259b8ebf783/codegen-examples/examples/removing_import_loops_in_pytorch). +You can find the complete example code in our [examples repository](https://github.com/codegen-sh/codegen-sdk/tree/develop/codegen-examples/examples/removing_import_loops_in_pytorch). ## Overview diff --git a/docs/tutorials/flask-to-fastapi.mdx b/docs/tutorials/flask-to-fastapi.mdx index bc7038c5d..ae72e8a9f 100644 --- a/docs/tutorials/flask-to-fastapi.mdx +++ b/docs/tutorials/flask-to-fastapi.mdx @@ -7,7 +7,7 @@ iconType: "solid" Migrating from [Flask](https://flask.palletsprojects.com/) to [FastAPI](https://fastapi.tiangolo.com/) involves several key changes to your codebase. This guide will walk you through using Codegen to automate this migration, handling imports, route decorators, static files, and template rendering. -You can find the complete example code in our [examples repository](https://github.com/codegen-sh/codegen-sdk/tree/93f0d4cd7740e3e01ee7ecfd69fd3259b8ebf783/codegen-examples/examples/flask_to_fastapi_migration) +You can find the complete example code in our [examples repository](https://github.com/codegen-sh/codegen-sdk/tree/develop/codegen-examples/examples/flask_to_fastapi_migration) ## Overview diff --git a/docs/tutorials/python2-to-python3.mdx b/docs/tutorials/python2-to-python3.mdx index 72758ef93..08e61648c 100644 --- a/docs/tutorials/python2-to-python3.mdx +++ b/docs/tutorials/python2-to-python3.mdx @@ -9,7 +9,7 @@ iconType: "solid" Migrating from Python 2 to Python 3 involves several syntax and API changes. This guide will walk you through using Codegen to automate this migration, handling print statements, string handling, iterators, and more. -You can find the complete example code in our [examples repository](https://github.com/codegen-sh/codegen-sdk/tree/93f0d4cd7740e3e01ee7ecfd69fd3259b8ebf783/codegen-examples/examples/python2_to_python3). +You can find the complete example code in our [examples repository](https://github.com/codegen-sh/codegen-sdk/tree/develop/codegen-examples/examples/python2_to_python3). ## Overview diff --git a/docs/tutorials/sqlalchemy-1.6-to-2.0.mdx b/docs/tutorials/sqlalchemy-1.6-to-2.0.mdx index 6df92f591..42e1ecb39 100644 --- a/docs/tutorials/sqlalchemy-1.6-to-2.0.mdx +++ b/docs/tutorials/sqlalchemy-1.6-to-2.0.mdx @@ -9,7 +9,7 @@ iconType: "solid" Migrating from [SQLAlchemy](https://www.sqlalchemy.org/) 1.6 to 2.0 involves several API changes to support the new 2.0-style query interface. This guide will walk you through using Codegen to automate this migration, handling query syntax, session usage, and ORM patterns. -You can find the complete example code in our [examples repository](https://github.com/codegen-sh/codegen-sdk/tree/93f0d4cd7740e3e01ee7ecfd69fd3259b8ebf783/codegen-examples/examples/sqlalchemy_1.6_to_2.0). +You can find the complete example code in our [examples repository](https://github.com/codegen-sh/codegen-sdk/tree/develop/codegen-examples/examples/sqlalchemy_1.6_to_2.0). ## Overview diff --git a/docs/tutorials/training-data.mdx b/docs/tutorials/training-data.mdx index 742a661f6..300ad07da 100644 --- a/docs/tutorials/training-data.mdx +++ b/docs/tutorials/training-data.mdx @@ -8,7 +8,7 @@ iconType: "solid" This guide demonstrates how to use Codegen to generate high-quality training data for large language models (LLMs) by extracting function implementations along with their dependencies and usages. This approach is similar to [word2vec](https://www.tensorflow.org/text/tutorials/word2vec) or [node2vec](https://snap.stanford.edu/node2vec/) - given the context of a function, learn to predict the function's implementation. -View the full code in our [examples repository](https://github.com/codegen-sh/codegen-sdk/tree/93f0d4cd7740e3e01ee7ecfd69fd3259b8ebf783/codegen-examples/examples/generate_training_data) +View the full code in our [examples repository](https://github.com/codegen-sh/codegen-sdk/tree/develop/codegen-examples/examples/generate_training_data) This example works with both Python and Typescript repositories without modification diff --git a/docs/tutorials/unittest-to-pytest.mdx b/docs/tutorials/unittest-to-pytest.mdx index f89472a05..bf633308c 100644 --- a/docs/tutorials/unittest-to-pytest.mdx +++ b/docs/tutorials/unittest-to-pytest.mdx @@ -9,7 +9,7 @@ iconType: "solid" Migrating from [unittest](https://docs.python.org/3/library/unittest.html) to [pytest](https://docs.pytest.org/) involves converting test classes and assertions to pytest's more modern and concise style. This guide will walk you through using Codegen to automate this migration. -You can find the complete example code in our [examples repository](https://github.com/codegen-sh/codegen-sdk/tree/93f0d4cd7740e3e01ee7ecfd69fd3259b8ebf783/codegen-examples/examples/unittest_to_pytest). +You can find the complete example code in our [examples repository](https://github.com/codegen-sh/codegen-sdk/tree/develop/codegen-examples/examples/unittest_to_pytest). ## Overview From 5b48892d9bf27a8289d3db26553c77a2337f5911 Mon Sep 17 00:00:00 2001 From: Jay Hack Date: Mon, 17 Feb 2025 15:00:29 -0800 Subject: [PATCH 28/33] feat: vector index refactor (#528) --- .../semantic-code-search.mdx | 98 +++++--- src/codegen/__init__.py | 6 +- src/codegen/extensions/__init__.py | 5 +- src/codegen/extensions/index/__init__.py | 0 src/codegen/extensions/index/code_index.py | 225 +++++++++++++++++ src/codegen/extensions/index/file_index.py | 218 +++++++++++++++++ src/codegen/extensions/index/symbol_index.py | 160 +++++++++++++ .../extensions/tools/semantic_search.py | 4 +- src/codegen/extensions/vector_index.py | 226 ------------------ tests/integration/test_vector_index.py | 137 +++++++++++ 10 files changed, 810 insertions(+), 269 deletions(-) create mode 100644 src/codegen/extensions/index/__init__.py create mode 100644 src/codegen/extensions/index/code_index.py create mode 100644 src/codegen/extensions/index/file_index.py create mode 100644 src/codegen/extensions/index/symbol_index.py delete mode 100644 src/codegen/extensions/vector_index.py create mode 100644 tests/integration/test_vector_index.py diff --git a/docs/building-with-codegen/semantic-code-search.mdx b/docs/building-with-codegen/semantic-code-search.mdx index 48c3b70d5..3c06f6180 100644 --- a/docs/building-with-codegen/semantic-code-search.mdx +++ b/docs/building-with-codegen/semantic-code-search.mdx @@ -5,80 +5,102 @@ icon: "magnifying-glass" iconType: "solid" --- -Codegen's `VectorIndex` enables semantic code search capabilities using embeddings. This allows you to search codebases using natural language queries and find semantically related code, even when the exact terms aren't present. +Codegen provides semantic code search capabilities using embeddings. This allows you to search codebases using natural language queries and find semantically related code, even when the exact terms aren't present. This is under active development. Interested in an application? [Reach out to the team!](/introduction/about.tsx) ## Basic Usage -Create and save a vector index for your codebase: +Here's how to create and use a semantic code search index: ```python -from codegen.extensions import VectorIndex +# Parse a codebase +codebase = Codebase.from_repo('fastapi/fastapi', language='python') -# Initialize with your codebase -index = VectorIndex(codebase) +# Create index +index = FileIndex(codebase) +index.create() # computes per-file embeddings -# Create embeddings for all files -index.create() +# Save index to .pkl +index.save('index.pkl') + +# Load index into memory +index.load('index.pkl') -# Save to disk (defaults to .codegen/vector_index.pkl) -index.save() +# Update index after changes +codebase.files[0].edit('# 🌈 Replacing File Content 🌈') +codebase.commit() +index.update() # re-computes 1 embedding ``` -Later, load the index and perform semantic searches: -```python -# Create a codebase -codebase = Codebase.from_repo('fastapi/fastapi') +## Searching Code -# Load a previously created index -index = VectorIndex(codebase) -index.load() +Once you have an index, you can perform semantic searches: +```python # Search with natural language results = index.similarity_search( "How does FastAPI handle dependency injection?", k=5 # number of results ) -# Print results with previews -for filepath, score in results: - print(f"\nScore: {score:.3f} | File: {filepath}") - file = codebase.get_file(filepath) +# Print results +for file, score in results: + print(f"\nScore: {score:.3f} | File: {file.filepath}") print(f"Preview: {file.content[:200]}...") ``` +The `FileIndex` returns tuples of ([File](/api-reference/core/SourceFile), `score`) The search uses cosine similarity between embeddings to find the most semantically related files, regardless of exact keyword matches. -## Getting Embeddings +## Available Indices -You can also get embeddings for arbitrary text using the same model: +Codegen provides two types of semantic indices: + +### FileIndex + +The `FileIndex` operates at the file level: +- Indexes entire files, splitting large files into chunks +- Best for finding relevant files or modules +- Simpler and faster to create/update ```python -# Get embeddings for a list of texts -texts = [ - "Some code or text to embed", - "Another piece of text" -] -embeddings = index.get_embeddings(texts) # shape: (n_texts, embedding_dim) +from codegen import FileIndex + +index = FileIndex(codebase) +index.create() +``` + +### SymbolIndex (Experimental) + +The `SymbolIndex` operates at the symbol level: +- Indexes individual functions, classes, and methods +- Better for finding specific code elements +- More granular search results + +```python +from codegen import SymbolIndex + +index = SymbolIndex(codebase) +index.create() ``` ## How It Works -The `VectorIndex` class: -1. Processes each file in your codebase -2. Splits large files into chunks that fit within token limits -3. Uses OpenAI's text-embedding-3-small model to create embeddings -4. Stores embeddings in a numpy array for efficient similarity search -5. Saves the index to disk for reuse +The semantic indices: +1. Process code at either file or symbol level +2. Split large content into chunks that fit within token limits +3. Use OpenAI's text-embedding-3-small model to create embeddings +4. Store embeddings efficiently for similarity search +5. Support incremental updates when code changes When searching: -1. Your query is converted to an embedding using the same model -2. Cosine similarity is computed between the query and all file embeddings -3. The most similar files are returned, along with their similarity scores +1. Your query is converted to an embedding +2. Cosine similarity is computed with all stored embeddings +3. The most similar items are returned with their scores Creating embeddings requires an OpenAI API key with access to the embeddings endpoint. @@ -86,7 +108,7 @@ Creating embeddings requires an OpenAI API key with access to the embeddings end ## Example Searches -Here are some example semantic searches that demonstrate the power of the system: +Here are some example semantic searches: ```python # Find authentication-related code diff --git a/src/codegen/__init__.py b/src/codegen/__init__.py index c61714134..7349dde28 100644 --- a/src/codegen/__init__.py +++ b/src/codegen/__init__.py @@ -1,5 +1,9 @@ from codegen.cli.sdk.decorator import function from codegen.cli.sdk.functions import Function + +# from codegen.extensions.index.file_index import FileIndex +# from codegen.extensions.langchain.agent import create_agent_with_tools, create_codebase_agent from codegen.sdk.core.codebase import Codebase +from codegen.shared.enums.programming_language import ProgrammingLanguage -__all__ = ["Codebase", "Function", "function"] +__all__ = ["Codebase", "Function", "ProgrammingLanguage", "function"] diff --git a/src/codegen/extensions/__init__.py b/src/codegen/extensions/__init__.py index 3958271ac..0726ffb10 100644 --- a/src/codegen/extensions/__init__.py +++ b/src/codegen/extensions/__init__.py @@ -1,5 +1,6 @@ """Extensions for the codegen package.""" -from codegen.extensions.vector_index import VectorIndex +from codegen.extensions.index.code_index import CodeIndex +from codegen.extensions.index.file_index import FileIndex -__all__ = ["VectorIndex"] +__all__ = ["CodeIndex", "FileIndex"] diff --git a/src/codegen/extensions/index/__init__.py b/src/codegen/extensions/index/__init__.py new file mode 100644 index 000000000..e69de29bb diff --git a/src/codegen/extensions/index/code_index.py b/src/codegen/extensions/index/code_index.py new file mode 100644 index 000000000..4cc50ab52 --- /dev/null +++ b/src/codegen/extensions/index/code_index.py @@ -0,0 +1,225 @@ +"""Abstract base class for code indexing implementations.""" + +from abc import ABC, abstractmethod +from pathlib import Path +from typing import Optional, TypeVar + +import numpy as np + +from codegen import Codebase + +T = TypeVar("T") # Type of the items being indexed (e.g., File, Symbol) + + +class CodeIndex(ABC): + """Abstract base class for semantic code search indices. + + This class defines the interface for different code indexing implementations. + Implementations can index at different granularities (files, symbols, etc.) + and use different embedding strategies. + + Attributes: + codebase (Codebase): The codebase being indexed + E (Optional[np.ndarray]): The embeddings matrix + items (Optional[np.ndarray]): Array of items corresponding to embeddings + commit_hash (Optional[str]): Git commit hash when index was last updated + """ + + DEFAULT_SAVE_DIR = ".codegen" + + def __init__(self, codebase: Codebase): + """Initialize the code index. + + Args: + codebase: The codebase to index + """ + self.codebase = codebase + self.E: Optional[np.ndarray] = None + self.items: Optional[np.ndarray] = None + self.commit_hash: Optional[str] = None + + @property + @abstractmethod + def save_file_name(self) -> str: + """The filename template for saving the index.""" + pass + + @abstractmethod + def _get_embeddings(self, items: list[T]) -> list[list[float]]: + """Get embeddings for a list of items. + + Args: + items: List of items to get embeddings for + + Returns: + List of embedding vectors + """ + pass + + @abstractmethod + def _get_items_to_index(self) -> list[tuple[T, str]]: + """Get all items that should be indexed and their content. + + Returns: + List of tuples (item, content_to_embed) + """ + pass + + @abstractmethod + def _get_changed_items(self) -> set[T]: + """Get set of items that have changed since last index update. + + Returns: + Set of changed items + """ + pass + + def _get_current_commit(self) -> str: + """Get the current git commit hash.""" + current = self.codebase.current_commit + if current is None: + msg = "No current commit found. Repository may be empty or in a detached HEAD state." + raise ValueError(msg) + return current.hexsha + + def _get_default_save_path(self) -> Path: + """Get the default save path for the index.""" + save_dir = Path(self.codebase.repo_path) / self.DEFAULT_SAVE_DIR + save_dir.mkdir(exist_ok=True) + + if self.commit_hash is None: + self.commit_hash = self._get_current_commit() + + filename = self.save_file_name.format(commit=self.commit_hash[:8]) + return save_dir / filename + + def create(self) -> None: + """Create embeddings for all indexed items.""" + self.commit_hash = self._get_current_commit() + + # Get items and their content + items_with_content = self._get_items_to_index() + if not items_with_content: + self.E = np.array([]) + self.items = np.array([]) + return + + # Split into separate lists + items, contents = zip(*items_with_content) + + # Get embeddings + embeddings = self._get_embeddings(contents) + + # Store embeddings and item identifiers + self.E = np.array(embeddings) + self.items = np.array([str(item) for item in items]) # Store string identifiers + + def update(self) -> None: + """Update embeddings for changed items only.""" + if self.E is None or self.items is None or self.commit_hash is None: + msg = "No index to update. Call create() or load() first." + raise ValueError(msg) + + # Get changed items + changed_items = self._get_changed_items() + if not changed_items: + return + + # Get content for changed items + items_with_content = [(item, content) for item, content in self._get_items_to_index() if item in changed_items] + + if not items_with_content: + return + + items, contents = zip(*items_with_content) + new_embeddings = self._get_embeddings(contents) + + # Create mapping of items to their indices + item_to_idx = {str(item): idx for idx, item in enumerate(self.items)} + + # Update embeddings + for item, embedding in zip(items, new_embeddings): + item_key = str(item) + if item_key in item_to_idx: + # Update existing embedding + self.E[item_to_idx[item_key]] = embedding + else: + # Add new embedding + self.E = np.vstack([self.E, embedding]) + self.items = np.append(self.items, item) + + # Update commit hash + self.commit_hash = self._get_current_commit() + + def save(self, save_path: Optional[str] = None) -> None: + """Save the index to disk.""" + if self.E is None or self.items is None: + msg = "No embeddings to save. Call create() first." + raise ValueError(msg) + + save_path = Path(save_path) if save_path else self._get_default_save_path() + save_path.parent.mkdir(parents=True, exist_ok=True) + + self._save_index(save_path) + + def load(self, load_path: Optional[str] = None) -> None: + """Load the index from disk.""" + load_path = Path(load_path) if load_path else self._get_default_save_path() + + if not load_path.exists(): + msg = f"No index found at {load_path}" + raise FileNotFoundError(msg) + + self._load_index(load_path) + + @abstractmethod + def _save_index(self, path: Path) -> None: + """Save index data to disk.""" + pass + + @abstractmethod + def _load_index(self, path: Path) -> None: + """Load index data from disk.""" + pass + + def _similarity_search_raw(self, query: str, k: int = 5) -> list[tuple[str, float]]: + """Internal method to find the k most similar items by their string identifiers. + + Args: + query: The text to search for + k: Number of results to return + + Returns: + List of tuples (item_identifier, similarity_score) sorted by similarity + """ + if self.E is None or self.items is None: + msg = "No embeddings available. Call create() or load() first." + raise ValueError(msg) + + # Get query embedding + query_embeddings = self._get_embeddings([query]) + query_embedding = query_embeddings[0] + + # Compute cosine similarity + query_norm = query_embedding / np.linalg.norm(query_embedding) + E_norm = self.E / np.linalg.norm(self.E, axis=1)[:, np.newaxis] + similarities = np.dot(E_norm, query_norm) + + # Get top k indices + top_indices = np.argsort(similarities)[-k:][::-1] + + # Return items and similarity scores + return [(str(self.items[idx]), float(similarities[idx])) for idx in top_indices] + + @abstractmethod + def similarity_search(self, query: str, k: int = 5) -> list[tuple[T, float]]: + """Find the k most similar items to a query. + + Args: + query: The text to search for + k: Number of results to return + + Returns: + List of tuples (item, similarity_score) sorted by similarity + """ + pass diff --git a/src/codegen/extensions/index/file_index.py b/src/codegen/extensions/index/file_index.py new file mode 100644 index 000000000..81b0174d9 --- /dev/null +++ b/src/codegen/extensions/index/file_index.py @@ -0,0 +1,218 @@ +"""File-level semantic code search index.""" + +import logging +import pickle +from pathlib import Path + +import numpy as np +import tiktoken +from openai import OpenAI +from tqdm import tqdm + +from codegen import Codebase +from codegen.extensions.index.code_index import CodeIndex +from codegen.sdk.core.file import File + +logger = logging.getLogger(__name__) + + +class FileIndex(CodeIndex): + """A semantic search index over codebase files. + + This implementation indexes entire files, splitting large files into chunks + if they exceed the token limit. + """ + + EMBEDDING_MODEL = "text-embedding-3-small" + MAX_TOKENS = 8000 + BATCH_SIZE = 100 + + def __init__(self, codebase: Codebase): + """Initialize the file index. + + Args: + codebase: The codebase to index + """ + super().__init__(codebase) + self.client = OpenAI() + self.encoding = tiktoken.get_encoding("cl100k_base") + + @property + def save_file_name(self) -> str: + return "file_index_{commit}.pkl" + + def _split_by_tokens(self, text: str) -> list[str]: + """Split text into chunks that fit within token limit.""" + tokens = self.encoding.encode(text) + chunks = [] + current_chunk = [] + current_size = 0 + + for token in tokens: + if current_size + 1 > self.MAX_TOKENS: + chunks.append(self.encoding.decode(current_chunk)) + current_chunk = [token] + current_size = 1 + else: + current_chunk.append(token) + current_size += 1 + + if current_chunk: + chunks.append(self.encoding.decode(current_chunk)) + + return chunks + + def _get_embeddings(self, texts: list[str]) -> list[list[float]]: + """Get embeddings for a batch of texts using OpenAI's API.""" + # Clean texts + texts = [text.replace("\\n", " ") for text in texts] + + # Process in batches with progress bar + all_embeddings = [] + for i in tqdm(range(0, len(texts), self.BATCH_SIZE), desc="Getting embeddings"): + batch = texts[i : i + self.BATCH_SIZE] + response = self.client.embeddings.create(model=self.EMBEDDING_MODEL, input=batch, encoding_format="float") + all_embeddings.extend(data.embedding for data in response.data) + + return all_embeddings + + def _get_items_to_index_for_files(self, files: list[File]) -> list[tuple[str, str]]: + """Get items to index for specific files.""" + items_to_index = [] + + # Filter out binary files and files without content + files_to_process = [] + for f in files: + try: + if f.content: # This will raise ValueError for binary files + files_to_process.append(f) + except ValueError: + logger.debug(f"Skipping binary file: {f.filepath}") + + if len(files) == 1: + logger.info(f"Processing file: {files[0].filepath}") + else: + logger.info(f"Found {len(files_to_process)} indexable files out of {len(files)} total files") + + # Collect all chunks that need to be processed + for file in files_to_process: + chunks = self._split_by_tokens(file.content) + if len(chunks) == 1: + items_to_index.append((file.filepath, file.content)) + else: + # For multi-chunk files, create virtual items + for i, chunk in enumerate(chunks): + chunk_id = f"{file.filepath}#chunk{i}" + items_to_index.append((chunk_id, chunk)) + + if items_to_index: + logger.info(f"Total chunks to process: {len(items_to_index)}") + return items_to_index + + def _get_items_to_index(self) -> list[tuple[str, str]]: + """Get all files and their content chunks to index.""" + return self._get_items_to_index_for_files(list(self.codebase.files)) + + def _get_changed_items(self) -> set[File]: + """Get set of files that have changed since last index.""" + if not self.commit_hash: + return set() + + # Get diffs between base commit and current state + diffs = self.codebase.get_diffs(self.commit_hash) + changed_files = set() + + for diff in diffs: + if diff.a_path: + file = self.codebase.get_file(diff.a_path) + if file: + changed_files.add(file) + if diff.b_path: + file = self.codebase.get_file(diff.b_path) + if file: + changed_files.add(file) + + return changed_files + + def _save_index(self, path: Path) -> None: + """Save index data to disk.""" + with open(path, "wb") as f: + pickle.dump({"E": self.E, "items": self.items, "commit_hash": self.commit_hash}, f) + + def _load_index(self, path: Path) -> None: + """Load index data from disk.""" + with open(path, "rb") as f: + data = pickle.load(f) + self.E = data["E"] + self.items = data["items"] + self.commit_hash = data["commit_hash"] + + def similarity_search(self, query: str, k: int = 5) -> list[tuple[File, float]]: + """Find the k most similar files to a query. + + Args: + query: The text to search for + k: Number of results to return + + Returns: + List of tuples (File, similarity_score) sorted by similarity + """ + results = [] + for filepath, score in self._similarity_search_raw(query, k): + # Handle chunked files + base_path = filepath.split("#")[0] # Remove chunk identifier if present + try: + if file := self.codebase.get_file(base_path): + results.append((file, score)) + except FileNotFoundError: + pass # Skip files that no longer exist + + return results + + def update(self) -> None: + """Update embeddings for changed files only.""" + if self.E is None or self.items is None or self.commit_hash is None: + msg = "No index to update. Call create() or load() first." + raise ValueError(msg) + + # Get changed files + changed_files = self._get_changed_items() + if not changed_files: + logger.info("No files have changed since last update") + return + + logger.info(f"Found {len(changed_files)} changed files to update") + + # Get content for changed files only + items_with_content = self._get_items_to_index_for_files(list(changed_files)) + + if not items_with_content: + logger.info("No valid content found in changed files") + return + + items, contents = zip(*items_with_content) + logger.info(f"Processing {len(contents)} chunks from changed files") + new_embeddings = self._get_embeddings(contents) + + # Create mapping of items to their indices + item_to_idx = {str(item): idx for idx, item in enumerate(self.items)} + + # Update embeddings + num_updated = 0 + num_added = 0 + for item, embedding in zip(items, new_embeddings): + item_key = str(item) + if item_key in item_to_idx: + # Update existing embedding + self.E[item_to_idx[item_key]] = embedding + num_updated += 1 + else: + # Add new embedding + self.E = np.vstack([self.E, embedding]) + self.items = np.append(self.items, item) + num_added += 1 + + logger.info(f"Updated {num_updated} existing embeddings and added {num_added} new embeddings") + + # Update commit hash + self.commit_hash = self._get_current_commit() diff --git a/src/codegen/extensions/index/symbol_index.py b/src/codegen/extensions/index/symbol_index.py new file mode 100644 index 000000000..8874dffc2 --- /dev/null +++ b/src/codegen/extensions/index/symbol_index.py @@ -0,0 +1,160 @@ +"""Symbol-level semantic code search index.""" + +import logging +import pickle +from pathlib import Path + +import tiktoken +from openai import OpenAI +from tqdm import tqdm + +from codegen import Codebase +from codegen.extensions.index.code_index import CodeIndex +from codegen.sdk.core.symbol import Symbol + +logger = logging.getLogger(__name__) + + +# TODO: WIP! +class SymbolIndex(CodeIndex): + """A semantic search index over codebase symbols. + + This implementation indexes individual symbols (functions, classes, etc.) + rather than entire files. This allows for more granular search results. + """ + + EMBEDDING_MODEL = "text-embedding-3-small" + MAX_TOKENS_PER_TEXT = 8000 # Max tokens per individual text + MAX_BATCH_TOKENS = 32000 # Max total tokens per API call + BATCH_SIZE = 100 # Max number of texts per API call + + def __init__(self, codebase: Codebase): + """Initialize the symbol index.""" + super().__init__(codebase) + self.client = OpenAI() + self.encoding = tiktoken.get_encoding("cl100k_base") + + @property + def save_file_name(self) -> str: + return "symbol_index_{commit}.pkl" + + def _batch_texts_by_tokens(self, texts: list[str]) -> list[list[str]]: + """Batch texts to maximize tokens per API call while respecting limits. + + This tries to pack as many texts as possible into each batch while ensuring: + 1. No individual text exceeds MAX_TOKENS_PER_TEXT + 2. Total tokens in batch doesn't exceed MAX_BATCH_TOKENS + 3. Number of texts doesn't exceed BATCH_SIZE + """ + batches = [] + current_batch = [] + current_tokens = 0 + + for text in texts: + # Get token count for this text + tokens = self.encoding.encode(text) + n_tokens = len(tokens) + + # If text is too long, truncate it + if n_tokens > self.MAX_TOKENS_PER_TEXT: + tokens = tokens[: self.MAX_TOKENS_PER_TEXT] + text = self.encoding.decode(tokens) + n_tokens = self.MAX_TOKENS_PER_TEXT + + # Check if adding this text would exceed batch limits + if len(current_batch) + 1 > self.BATCH_SIZE or current_tokens + n_tokens > self.MAX_BATCH_TOKENS: + # Current batch is full, start a new one + if current_batch: + batches.append(current_batch) + current_batch = [] + current_tokens = 0 + + # Add text to current batch + current_batch.append(text) + current_tokens += n_tokens + + # Add the last batch if not empty + if current_batch: + batches.append(current_batch) + + return batches + + def _get_embeddings(self, texts: list[str]) -> list[list[float]]: + """Get embeddings for a batch of texts using OpenAI's API.""" + # Clean texts + texts = [text.replace("\\n", " ") for text in texts] + + # Batch texts efficiently + batches = self._batch_texts_by_tokens(texts) + logger.info(f"Processing {len(texts)} texts in {len(batches)} batches") + + # Process batches with progress bar + all_embeddings = [] + for batch in tqdm(batches, desc="Getting embeddings"): + response = self.client.embeddings.create(model=self.EMBEDDING_MODEL, input=batch, encoding_format="float") + all_embeddings.extend(data.embedding for data in response.data) + + return all_embeddings + + def _get_items_to_index(self) -> list[tuple[str, str]]: + """Get all symbols and their content to index.""" + items_to_index = [] + symbols_to_process = [s for s in self.codebase.symbols if s.source] + logger.info(f"Found {len(symbols_to_process)} symbols to index") + + # Process each symbol - no need to pre-truncate since _batch_texts_by_tokens handles it + for symbol in symbols_to_process: + symbol_id = f"{symbol.file.filepath}::{symbol.name}" + items_to_index.append((symbol_id, symbol.source)) + + logger.info(f"Total symbols to process: {len(items_to_index)}") + return items_to_index + + def _get_changed_items(self) -> set[Symbol]: + """Get set of symbols that have changed since last index.""" + if not self.commit_hash: + return set() + + # Get diffs between base commit and current state + diffs = self.codebase.get_diffs(self.commit_hash) + changed_symbols = set() + + # Get all symbols from changed files + for diff in diffs: + for path in [diff.a_path, diff.b_path]: + if not path: + continue + file = self.codebase.get_file(path) + if file: + changed_symbols.update(s for s in file.symbols if s.source) + + logger.info(f"Found {len(changed_symbols)} changed symbols") + return changed_symbols + + def _save_index(self, path: Path) -> None: + """Save index data to disk.""" + with open(path, "wb") as f: + pickle.dump({"E": self.E, "items": self.items, "commit_hash": self.commit_hash}, f) + + def _load_index(self, path: Path) -> None: + """Load index data from disk.""" + with open(path, "rb") as f: + data = pickle.load(f) + self.E = data["E"] + self.items = data["items"] + self.commit_hash = data["commit_hash"] + + def similarity_search(self, query: str, k: int = 5) -> list[tuple[Symbol, float]]: + """Find the k most similar symbols to a query.""" + results = [] + for symbol_id, score in self._similarity_search_raw(query, k): + # Parse the symbol identifier + filepath, symbol_name = symbol_id.split("::") + # Get the file and find the symbol + if file := self.codebase.get_file(filepath): + for symbol in file.symbols: + if symbol.name == symbol_name and symbol.source: + results.append((symbol, score)) + break + + return results diff --git a/src/codegen/extensions/tools/semantic_search.py b/src/codegen/extensions/tools/semantic_search.py index cd1ac04fd..9394285ad 100644 --- a/src/codegen/extensions/tools/semantic_search.py +++ b/src/codegen/extensions/tools/semantic_search.py @@ -3,7 +3,7 @@ from typing import Any, Optional from codegen import Codebase -from codegen.extensions.vector_index import VectorIndex +from codegen.extensions.index.file_index import FileIndex def semantic_search( @@ -51,7 +51,7 @@ def semantic_search( """ try: # Initialize vector index - index = VectorIndex(codebase) + index = FileIndex(codebase) # Try to load existing index try: diff --git a/src/codegen/extensions/vector_index.py b/src/codegen/extensions/vector_index.py deleted file mode 100644 index 7459c0042..000000000 --- a/src/codegen/extensions/vector_index.py +++ /dev/null @@ -1,226 +0,0 @@ -"""Vector index for semantic search over codebase files.""" - -import pickle -from pathlib import Path -from typing import Optional - -import numpy as np -import tiktoken -from openai import OpenAI -from tqdm import tqdm - -from codegen import Codebase - - -class VectorIndex: - """A vector index for semantic search over codebase files. - - This class manages embeddings for all files in a codebase, allowing for semantic search - and similarity comparisons. It uses OpenAI's text-embedding model to generate embeddings - and stores them efficiently on disk. - - Attributes: - codebase (Codebase): The codebase to index - E (Optional[np.ndarray]): The embeddings matrix, shape (n_files, embedding_dim) - file_paths (Optional[np.ndarray]): Array of file paths corresponding to embeddings - """ - - DEFAULT_SAVE_DIR = ".codegen" - DEFAULT_SAVE_FILE = "vector_index.pkl" - EMBEDDING_MODEL = "text-embedding-3-small" - MAX_TOKENS = 8000 - BATCH_SIZE = 100 - - def __init__(self, codebase: Codebase): - """Initialize the vector index. - - Args: - codebase: The codebase to create embeddings for - """ - self.codebase = codebase - self.E: Optional[np.ndarray] = None - self.file_paths: Optional[np.ndarray] = None - - # Initialize OpenAI client and tokenizer - self.client = OpenAI() - self.encoding = tiktoken.get_encoding("cl100k_base") - - def _get_default_save_path(self) -> Path: - """Get the default save path for the vector index.""" - save_dir = Path(self.codebase.repo_path) / self.DEFAULT_SAVE_DIR - save_dir.mkdir(exist_ok=True) - return save_dir / self.DEFAULT_SAVE_FILE - - def _get_embeddings(self, texts: list[str]) -> list[list[float]]: - """Get embeddings for a batch of texts using OpenAI's API.""" - # Clean texts - texts = [text.replace("\\n", " ") for text in texts] - - response = self.client.embeddings.create(model=self.EMBEDDING_MODEL, input=texts, encoding_format="float") - return [data.embedding for data in response.data] - - def _split_by_tokens(self, text: str) -> list[str]: - """Split text into chunks that fit within token limit.""" - tokens = self.encoding.encode(text) - chunks = [] - current_chunk = [] - current_size = 0 - - for token in tokens: - if current_size + 1 > self.MAX_TOKENS: - chunks.append(self.encoding.decode(current_chunk)) - current_chunk = [token] - current_size = 1 - else: - current_chunk.append(token) - current_size += 1 - - if current_chunk: - chunks.append(self.encoding.decode(current_chunk)) - - return chunks - - def create(self) -> None: - """Create embeddings for all files in the codebase. - - This method processes all files in the codebase, generates embeddings using - OpenAI's API, and stores them in memory. The embeddings can then be saved - to disk using save(). - """ - # Store file paths and their embeddings - file_embeddings = {} - - # Collect all valid files and their chunks - chunks_to_process = [] - for file in tqdm(self.codebase.files, desc="Collecting files"): - content = file.content - if not content: # Skip empty files - continue - - # Split content into chunks by token count - content_chunks = self._split_by_tokens(content) - - if len(content_chunks) == 1: - # If only one chunk, store as is - chunks_to_process.append((file.filepath, content, 0)) - else: - # If multiple chunks, store with chunk index - for i, chunk in enumerate(content_chunks): - chunks_to_process.append((file.filepath, chunk, i)) - - # Process in batches - for i in tqdm(range(0, len(chunks_to_process), self.BATCH_SIZE), desc="Processing batches"): - batch = chunks_to_process[i : i + self.BATCH_SIZE] - filepaths, contents, chunk_indices = zip(*batch) - - try: - # Get embeddings for the batch - embeddings = self._get_embeddings(contents) - - # Store results - for filepath, content, chunk_idx, embedding in zip(filepaths, contents, chunk_indices, embeddings): - key = filepath if chunk_idx == 0 else f"{filepath}#chunk{chunk_idx}" - file_embeddings[key] = {"embedding": embedding, "content": content, "size": len(content), "chunk_index": chunk_idx} - except Exception as e: - print(f"Error processing batch {i // self.BATCH_SIZE}: {e}") - - # Convert to numpy arrays - embeddings_list = [] - file_paths = [] - - for filepath, data in file_embeddings.items(): - embeddings_list.append(data["embedding"]) - file_paths.append(filepath) - - self.E = np.array(embeddings_list) - self.file_paths = np.array(file_paths) - - def save(self, save_path: Optional[str] = None) -> None: - """Save the vector index to disk. - - Args: - save_path: Optional path to save the index to. If not provided, - saves to .codegen/vector_index.pkl in the repo root. - """ - if self.E is None or self.file_paths is None: - msg = "No embeddings to save. Call create() first." - raise ValueError(msg) - - save_path = Path(save_path) if save_path else self._get_default_save_path() - - # Ensure parent directory exists - save_path.parent.mkdir(parents=True, exist_ok=True) - - with open(save_path, "wb") as f: - pickle.dump({"E": self.E, "file_paths": self.file_paths}, f) - - def load(self, load_path: Optional[str] = None) -> None: - """Load a previously saved vector index from disk. - - Args: - load_path: Optional path to load the index from. If not provided, - loads from .codegen/vector_index.pkl in the repo root. - """ - load_path = Path(load_path) if load_path else self._get_default_save_path() - - if not load_path.exists(): - msg = f"No vector index found at {load_path}" - raise FileNotFoundError(msg) - - with open(load_path, "rb") as f: - data = pickle.load(f) - # Handle both old and new format - self.E = data.get("E", data.get("embeddings")) - self.file_paths = data["file_paths"] - - def get_embeddings(self, texts: list[str]) -> np.ndarray: - """Get embeddings for a list of texts using the same model as the index. - - Args: - texts: List of text strings to get embeddings for - - Returns: - np.ndarray: Array of embeddings with shape (len(texts), embedding_dim) - """ - # Clean and get embeddings - embeddings = self._get_embeddings(texts) - return np.array(embeddings) - - def similarity_search(self, query: str, k: int = 5) -> list[tuple[str, float]]: - """Find the k most similar files to a query text. - - Uses cosine similarity between the query embedding and all file embeddings - to find the most similar files. - - Args: - query: The text to search for - k: Number of results to return (default: 5) - - Returns: - List of tuples (filepath, similarity_score) sorted by similarity (highest first) - - Raises: - ValueError: If the index hasn't been created yet (E is None) - """ - if self.E is None or self.file_paths is None: - msg = "No embeddings available. Call create() or load() first." - raise ValueError(msg) - - # Get query embedding - query_embedding = self.get_embeddings([query])[0] - - # Compute cosine similarity - # Normalize vectors for cosine similarity - query_norm = query_embedding / np.linalg.norm(query_embedding) - E_norm = self.E / np.linalg.norm(self.E, axis=1)[:, np.newaxis] - similarities = np.dot(E_norm, query_norm) - - # Get top k indices - top_indices = np.argsort(similarities)[-k:][::-1] - - # Return filepath and similarity score pairs - results = [] - for idx in top_indices: - results.append((self.file_paths[idx], float(similarities[idx]))) - - return results diff --git a/tests/integration/test_vector_index.py b/tests/integration/test_vector_index.py new file mode 100644 index 000000000..f2945203f --- /dev/null +++ b/tests/integration/test_vector_index.py @@ -0,0 +1,137 @@ +from pathlib import Path + +import numpy as np +import pytest + +from codegen.extensions.index.file_index import FileIndex +from codegen.sdk.codebase.factory.get_session import get_codebase_session + + +def test_file_index_lifecycle(tmpdir) -> None: + # language=python + content1 = """ +def hello(): + print("Hello, world!") + +def goodbye(): + print("Goodbye, world!") +""" + + # language=python + content2 = """ +def greet(name: str): + print(f"Hi {name}!") +""" + + with get_codebase_session(tmpdir=tmpdir, files={"greetings.py": content1, "hello.py": content2}) as codebase: + # Test construction and initial indexing + index = FileIndex(codebase) + index.create() + + # Verify initial state + assert index.E is not None + assert index.items is not None + assert len(index.items) == 2 # Both files should be indexed + assert index.commit_hash is not None + + # Test similarity search + results = index.similarity_search("greeting someone", k=2) + assert len(results) == 2 + # The greet function should be most relevant to greeting + assert any("hello.py" in file.filepath for file, _ in results) + + # Test saving + save_dir = Path(tmpdir) / ".codegen" + index.save() + assert save_dir.exists() + saved_files = list(save_dir.glob("file_index_*.pkl")) + assert len(saved_files) == 1 + + # Test loading + new_index = FileIndex(codebase) + new_index.load(saved_files[0]) + assert np.array_equal(index.E, new_index.E) + assert np.array_equal(index.items, new_index.items) + assert index.commit_hash == new_index.commit_hash + + # Test updating after file changes + # Add a new function to greetings.py + greetings_file = codebase.get_file("greetings.py") + new_content = greetings_file.content + "\n\ndef welcome():\n print('Welcome!')\n" + greetings_file.edit(new_content) + + # Update the index + index.update() + + # Verify the update + assert len(index.items) >= 2 # Should have at least the original files + + # Search for the new content + results = index.similarity_search("welcome message", k=2) + assert len(results) == 2 + # The updated greetings.py should be relevant now + assert any("greetings.py" in file.filepath for file, _ in results) + + +def test_file_index_empty_file(tmpdir) -> None: + """Test that the file index handles empty files gracefully.""" + with get_codebase_session(tmpdir=tmpdir, files={"empty.py": ""}) as codebase: + index = FileIndex(codebase) + index.create() + assert len(index.items) == 0 # Empty file should be skipped + + +def test_file_index_large_file(tmpdir) -> None: + """Test that the file index handles files larger than the token limit.""" + # Create a large file by repeating a simple function many times + large_content = "def f():\n print('test')\n\n" * 10000 + + with get_codebase_session(tmpdir=tmpdir, files={"large.py": large_content}) as codebase: + index = FileIndex(codebase) + index.create() + + # Should have multiple chunks for the large file + assert len([item for item in index.items if "large.py" in item]) > 1 + + # Test searching in large file + results = index.similarity_search("function that prints test", k=1) + assert len(results) == 1 + assert "large.py" in results[0][0].filepath + + +def test_file_index_invalid_operations(tmpdir) -> None: + """Test that the file index properly handles invalid operations.""" + with get_codebase_session(tmpdir=tmpdir, files={"test.py": "print('test')"}) as codebase: + index = FileIndex(codebase) + + # Test searching before creating index + with pytest.raises(ValueError, match="No embeddings available"): + index.similarity_search("test") + + # Test saving before creating index + with pytest.raises(ValueError, match="No embeddings to save"): + index.save() + + # Test updating before creating index + with pytest.raises(ValueError, match="No index to update"): + index.update() + + # Test loading from non-existent path + with pytest.raises(FileNotFoundError): + index.load("nonexistent.pkl") + + +def test_file_index_binary_files(tmpdir) -> None: + """Test that the file index properly handles binary files.""" + # Create a binary file + binary_content = bytes([0x89, 0x50, 0x4E, 0x47, 0x0D, 0x0A, 0x1A, 0x0A]) # PNG header + binary_path = Path(tmpdir) / "test.png" + binary_path.write_bytes(binary_content) + + with get_codebase_session(tmpdir=tmpdir, files={"test.py": "print('test')", "test.png": binary_content}) as codebase: + index = FileIndex(codebase) + index.create() + + # Should only index the Python file + assert len(index.items) == 1 + assert all("test.py" in item for item in index.items) From 1ebb0847722121faa1b0cd3d49ed02837762e458 Mon Sep 17 00:00:00 2001 From: rushilpatel0 <171610820+rushilpatel0@users.noreply.github.com> Date: Tue, 18 Feb 2025 16:27:03 +0000 Subject: [PATCH 29/33] Automated pre-commit update --- .../examples/codegen-mcp-server/pyproject.toml | 14 +++++++------- 1 file changed, 7 insertions(+), 7 deletions(-) diff --git a/codegen-examples/examples/codegen-mcp-server/pyproject.toml b/codegen-examples/examples/codegen-mcp-server/pyproject.toml index e03b0d72e..e07bacb45 100644 --- a/codegen-examples/examples/codegen-mcp-server/pyproject.toml +++ b/codegen-examples/examples/codegen-mcp-server/pyproject.toml @@ -5,13 +5,13 @@ description = "MCP server implementation adding tools for the Codegen SDK" readme = "README.md" requires-python = ">=3.12" dependencies = [ - "codegen>=0.14.5", - "fastmcp>=1.2.1", - "uvicorn>=0.27.1", - "fastapi>=0.110.0", - "pydantic>=2.6.3", - "rich>=13.7.1", - "click>=8.1.7", + "codegen>=0.14.5", + "fastmcp>=1.2.1", + "uvicorn>=0.27.1", + "fastapi>=0.110.0", + "pydantic>=2.6.3", + "rich>=13.7.1", + "click>=8.1.7", ] [tool.poetry.scripts] From 354988782d1faf7c5d209df5bcde53856c7b3166 Mon Sep 17 00:00:00 2001 From: Rushil Patel Date: Tue, 18 Feb 2025 08:53:58 -0800 Subject: [PATCH 30/33] update pyproject script --- .../examples/codegen-mcp-server/README.md | 61 +++ .../codegen-mcp-server/pyproject.toml | 16 +- .../examples/codegen-mcp-server/server.py | 6 +- .../examples/codegen-mcp-server/uv.lock | 383 +++++++++++++++++- 4 files changed, 455 insertions(+), 11 deletions(-) create mode 100644 codegen-examples/examples/codegen-mcp-server/README.md diff --git a/codegen-examples/examples/codegen-mcp-server/README.md b/codegen-examples/examples/codegen-mcp-server/README.md new file mode 100644 index 000000000..13f61e387 --- /dev/null +++ b/codegen-examples/examples/codegen-mcp-server/README.md @@ -0,0 +1,61 @@ +# Codegen MCP Server + +

+ + + +

+ +

+ An MCP server implementation that integrates the codegen sdk. + +

+ +
+ +[![Documentation](https://img.shields.io/badge/Docs-docs.codegen.com-purple?style=flat-square)](https://docs.codegen.com) +[![License](https://img.shields.io/badge/Code%20License-Apache%202.0-gray?&color=gray)](https://github.com/codegen-sh/codegen-sdk/tree/develop?tab=Apache-2.0-1-ov-file) + +
+ +This example demonstrates how to run a Model Control Protocol (MCP) server that integrates with Codegen. The server provides: + +1. A standardized interface for model inference +2. Integration with Codegen's core functionality, parsing codebases and executing codemods +3. Support for various LLM providers through the MCP protocol + + +## Quick Start + +### Prerequisites +- [uv](https://docs.astral.sh/uv/getting-started/installation/) +- [python](https://www.python.org/downloads/) 3.12+ + + +### Direct Execution + +1. No installation is necessary, with the following command. Run this command directly or add it your `.json` mcp config file. + +```bash + uvx --from 'git+https://github.com/codegen-sh/codegen-sdk.git@ce8cffe#egg=codegen-mcp-server&subdirectory=codegen-examples/examples/codegen-mcp-server' codegen-mcp-server +``` + + +### Example MCP Config +Here is an example mcp config that can be used with Cline or Claude desktop to integrate this MCP server + +```json +{ + "mcpServers": { + "codegen-mcp": { + "command": "uvx", + "args": [ + "--from", "git+https://github.com/codegen-sh/codegen-sdk.git#egg=codegen-mcp-server&subdirectory=codegen-examples/examples/codegen-mcp-server", "codegen-mcp-server" + ], + "disabled": false, + "autoApprove": [] + } + } +} + +``` diff --git a/codegen-examples/examples/codegen-mcp-server/pyproject.toml b/codegen-examples/examples/codegen-mcp-server/pyproject.toml index e07bacb45..925703ccf 100644 --- a/codegen-examples/examples/codegen-mcp-server/pyproject.toml +++ b/codegen-examples/examples/codegen-mcp-server/pyproject.toml @@ -5,14 +5,16 @@ description = "MCP server implementation adding tools for the Codegen SDK" readme = "README.md" requires-python = ">=3.12" dependencies = [ - "codegen>=0.14.5", - "fastmcp>=1.2.1", - "uvicorn>=0.27.1", - "fastapi>=0.110.0", - "pydantic>=2.6.3", - "rich>=13.7.1", - "click>=8.1.7", + "codegen>=0.14.5", + "uvicorn>=0.27.1", + "fastapi>=0.110.0", + "pydantic>=2.6.3", + "rich>=13.7.1", + "click>=8.1.7", + "mcp[cli]>=1.2.1", ] [tool.poetry.scripts] codegen-mcp-server = "server:main" +[project.scripts] +codegen-mcp-server = "server:main" diff --git a/codegen-examples/examples/codegen-mcp-server/server.py b/codegen-examples/examples/codegen-mcp-server/server.py index f5370fb09..ddf20dec6 100644 --- a/codegen-examples/examples/codegen-mcp-server/server.py +++ b/codegen-examples/examples/codegen-mcp-server/server.py @@ -82,8 +82,12 @@ async def execute_codemod(codemod: Annotated[str, "The python codemod code to ex return {"error": f"Error executing codemod: {str(e)}", "details": {"type": type(e).__name__, "message": str(e)}} -if __name__ == "__main__": +def main(): print("starting codegen-mcp-server") run = mcp.run_stdio_async() print("codegen-mcp-server started") asyncio.run(run) + + +if __name__ == "__main__": + main() diff --git a/codegen-examples/examples/codegen-mcp-server/uv.lock b/codegen-examples/examples/codegen-mcp-server/uv.lock index 2df96cd0a..831c1817a 100644 --- a/codegen-examples/examples/codegen-mcp-server/uv.lock +++ b/codegen-examples/examples/codegen-mcp-server/uv.lock @@ -1,5 +1,9 @@ version = 1 -requires-python = ">=3.13" +requires-python = ">=3.12" +resolution-markers = [ + "python_full_version >= '3.12.4'", + "python_full_version < '3.12.4'", +] [[package]] name = "aiohappyeyeballs" @@ -25,6 +29,22 @@ dependencies = [ ] sdist = { url = "https://files.pythonhosted.org/packages/37/4b/952d49c73084fb790cb5c6ead50848c8e96b4980ad806cf4d2ad341eaa03/aiohttp-3.11.12.tar.gz", hash 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+0000 Subject: [PATCH 31/33] Automated pre-commit update --- .../examples/codegen-mcp-server/README.md | 14 +++++++------- .../examples/codegen-mcp-server/pyproject.toml | 14 +++++++------- 2 files changed, 14 insertions(+), 14 deletions(-) diff --git a/codegen-examples/examples/codegen-mcp-server/README.md b/codegen-examples/examples/codegen-mcp-server/README.md index 13f61e387..372d51c0e 100644 --- a/codegen-examples/examples/codegen-mcp-server/README.md +++ b/codegen-examples/examples/codegen-mcp-server/README.md @@ -21,17 +21,16 @@ This example demonstrates how to run a Model Control Protocol (MCP) server that integrates with Codegen. The server provides: 1. A standardized interface for model inference -2. Integration with Codegen's core functionality, parsing codebases and executing codemods -3. Support for various LLM providers through the MCP protocol - +1. Integration with Codegen's core functionality, parsing codebases and executing codemods +1. Support for various LLM providers through the MCP protocol ## Quick Start ### Prerequisites + - [uv](https://docs.astral.sh/uv/getting-started/installation/) - [python](https://www.python.org/downloads/) 3.12+ - ### Direct Execution 1. No installation is necessary, with the following command. Run this command directly or add it your `.json` mcp config file. @@ -40,8 +39,8 @@ This example demonstrates how to run a Model Control Protocol (MCP) server that uvx --from 'git+https://github.com/codegen-sh/codegen-sdk.git@ce8cffe#egg=codegen-mcp-server&subdirectory=codegen-examples/examples/codegen-mcp-server' codegen-mcp-server ``` - ### Example MCP Config + Here is an example mcp config that can be used with Cline or Claude desktop to integrate this MCP server ```json @@ -50,12 +49,13 @@ Here is an example mcp config that can be used with Cline or Claude desktop to i "codegen-mcp": { "command": "uvx", "args": [ - "--from", "git+https://github.com/codegen-sh/codegen-sdk.git#egg=codegen-mcp-server&subdirectory=codegen-examples/examples/codegen-mcp-server", "codegen-mcp-server" + "--from", + "git+https://github.com/codegen-sh/codegen-sdk.git#egg=codegen-mcp-server&subdirectory=codegen-examples/examples/codegen-mcp-server", + "codegen-mcp-server" ], "disabled": false, "autoApprove": [] } } } - ``` diff --git a/codegen-examples/examples/codegen-mcp-server/pyproject.toml b/codegen-examples/examples/codegen-mcp-server/pyproject.toml index 925703ccf..598fc37f0 100644 --- a/codegen-examples/examples/codegen-mcp-server/pyproject.toml +++ b/codegen-examples/examples/codegen-mcp-server/pyproject.toml @@ -5,13 +5,13 @@ description = "MCP server implementation adding tools for the Codegen SDK" readme = "README.md" requires-python = ">=3.12" dependencies = [ - "codegen>=0.14.5", - "uvicorn>=0.27.1", - "fastapi>=0.110.0", - "pydantic>=2.6.3", - "rich>=13.7.1", - "click>=8.1.7", - "mcp[cli]>=1.2.1", + "codegen>=0.14.5", + "uvicorn>=0.27.1", + "fastapi>=0.110.0", + "pydantic>=2.6.3", + "rich>=13.7.1", + "click>=8.1.7", + "mcp[cli]>=1.2.1", ] [tool.poetry.scripts] From 95fccae6c069dfcc6f6c39255de1c5c418a3d777 Mon Sep 17 00:00:00 2001 From: Rushil Patel Date: Tue, 18 Feb 2025 11:00:56 -0800 Subject: [PATCH 32/33] fix: update readme --- .../examples/codegen-mcp-server/README.md | 22 +++++++++++++------ .../examples/codegen-mcp-server/server.py | 4 ++-- 2 files changed, 17 insertions(+), 9 deletions(-) diff --git a/codegen-examples/examples/codegen-mcp-server/README.md b/codegen-examples/examples/codegen-mcp-server/README.md index 372d51c0e..e39d44ab3 100644 --- a/codegen-examples/examples/codegen-mcp-server/README.md +++ b/codegen-examples/examples/codegen-mcp-server/README.md @@ -21,16 +21,17 @@ This example demonstrates how to run a Model Control Protocol (MCP) server that integrates with Codegen. The server provides: 1. A standardized interface for model inference -1. Integration with Codegen's core functionality, parsing codebases and executing codemods -1. Support for various LLM providers through the MCP protocol +2. Integration with Codegen's core functionality, parsing codebases and executing codemods +3. Support for various LLM providers through the MCP protocol + ## Quick Start ### Prerequisites - - [uv](https://docs.astral.sh/uv/getting-started/installation/) - [python](https://www.python.org/downloads/) 3.12+ + ### Direct Execution 1. No installation is necessary, with the following command. Run this command directly or add it your `.json` mcp config file. @@ -39,8 +40,8 @@ This example demonstrates how to run a Model Control Protocol (MCP) server that uvx --from 'git+https://github.com/codegen-sh/codegen-sdk.git@ce8cffe#egg=codegen-mcp-server&subdirectory=codegen-examples/examples/codegen-mcp-server' codegen-mcp-server ``` -### Example MCP Config +### Example MCP Config Here is an example mcp config that can be used with Cline or Claude desktop to integrate this MCP server ```json @@ -49,13 +50,20 @@ Here is an example mcp config that can be used with Cline or Claude desktop to i "codegen-mcp": { "command": "uvx", "args": [ - "--from", - "git+https://github.com/codegen-sh/codegen-sdk.git#egg=codegen-mcp-server&subdirectory=codegen-examples/examples/codegen-mcp-server", - "codegen-mcp-server" + "--from", "git+https://github.com/codegen-sh/codegen-sdk.git#egg=codegen-mcp-server&subdirectory=codegen-examples/examples/codegen-mcp-server", "codegen-mcp-server" ], "disabled": false, "autoApprove": [] } } } + ``` + + +###MCP Tools: + +- `parse_codebase`: Parses a codebase located at the provided path. +- `check_parse_status`: Provides the current parsing status for the provided codebase. +- `execute_codemod`: Executes a codemod script on a parsed codebase. This is where the codegen sdk leveraged to run simple or sophisticated codemods on the codebase. + diff --git a/codegen-examples/examples/codegen-mcp-server/server.py b/codegen-examples/examples/codegen-mcp-server/server.py index ddf20dec6..68e5f638b 100644 --- a/codegen-examples/examples/codegen-mcp-server/server.py +++ b/codegen-examples/examples/codegen-mcp-server/server.py @@ -51,8 +51,8 @@ async def parse_codebase(codebase_path: Annotated[str, "path to the codebase to return {"message": "Codebase is already being parsed."} -@mcp.tool(name="check_parsing_status", description="Check if codebase parsing has completed") -async def check_parsing_status() -> Dict[str, str]: +@mcp.tool(name="check_parse_status", description="Check if codebase parsing has completed") +async def check_parse_status() -> Dict[str, str]: if not state.parse_task: return {"message": "No codebase provided to parse."} if state.parse_task.done(): From 8753193d7a1079cfdfbfbcfe724467fe83ac125c Mon Sep 17 00:00:00 2001 From: rushilpatel0 <171610820+rushilpatel0@users.noreply.github.com> Date: Tue, 18 Feb 2025 19:01:45 +0000 Subject: [PATCH 33/33] Automated pre-commit update --- .../examples/codegen-mcp-server/README.md | 18 ++++++++---------- 1 file changed, 8 insertions(+), 10 deletions(-) diff --git a/codegen-examples/examples/codegen-mcp-server/README.md b/codegen-examples/examples/codegen-mcp-server/README.md index e39d44ab3..9961018aa 100644 --- a/codegen-examples/examples/codegen-mcp-server/README.md +++ b/codegen-examples/examples/codegen-mcp-server/README.md @@ -21,17 +21,16 @@ This example demonstrates how to run a Model Control Protocol (MCP) server that integrates with Codegen. The server provides: 1. A standardized interface for model inference -2. Integration with Codegen's core functionality, parsing codebases and executing codemods -3. Support for various LLM providers through the MCP protocol - +1. Integration with Codegen's core functionality, parsing codebases and executing codemods +1. Support for various LLM providers through the MCP protocol ## Quick Start ### Prerequisites + - [uv](https://docs.astral.sh/uv/getting-started/installation/) - [python](https://www.python.org/downloads/) 3.12+ - ### Direct Execution 1. No installation is necessary, with the following command. Run this command directly or add it your `.json` mcp config file. @@ -40,8 +39,8 @@ This example demonstrates how to run a Model Control Protocol (MCP) server that uvx --from 'git+https://github.com/codegen-sh/codegen-sdk.git@ce8cffe#egg=codegen-mcp-server&subdirectory=codegen-examples/examples/codegen-mcp-server' codegen-mcp-server ``` - ### Example MCP Config + Here is an example mcp config that can be used with Cline or Claude desktop to integrate this MCP server ```json @@ -50,20 +49,19 @@ Here is an example mcp config that can be used with Cline or Claude desktop to i "codegen-mcp": { "command": "uvx", "args": [ - "--from", "git+https://github.com/codegen-sh/codegen-sdk.git#egg=codegen-mcp-server&subdirectory=codegen-examples/examples/codegen-mcp-server", "codegen-mcp-server" + "--from", + "git+https://github.com/codegen-sh/codegen-sdk.git#egg=codegen-mcp-server&subdirectory=codegen-examples/examples/codegen-mcp-server", + "codegen-mcp-server" ], "disabled": false, "autoApprove": [] } } } - ``` - ###MCP Tools: - `parse_codebase`: Parses a codebase located at the provided path. - `check_parse_status`: Provides the current parsing status for the provided codebase. -- `execute_codemod`: Executes a codemod script on a parsed codebase. This is where the codegen sdk leveraged to run simple or sophisticated codemods on the codebase. - +- `execute_codemod`: Executes a codemod script on a parsed codebase. This is where the codegen sdk leveraged to run simple or sophisticated codemods on the codebase.