For running perceptual and cognitive experiments
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ExptModule
input
Experimenter.py
LICENSE
README.md
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README.md

Experimenter

Experimenter is an open-source Python-based framework for running diverse behavioral experiments, with both humans and animals. It can show pictures and video, play sounds and operate devices (e.g. feeders), and get responses from keyboard, touchscreen, mouse, or button box (code unfortunately not included in the open-source version, because the control software is not open-source). Quite complex experimental designs are possible, but we try to make simple stuff simple. This code is freely available under GPL.

Developing 'Experimenter' was supported by ERC Advanced Grant SOMACCA # 230604.

http://www.somacca.net


If you download this repository and run 'Experimenter.py' with Python (tested with Python 2.6 and 2.7 from python.org), it should run a sample pseudo experiment, '_sample_expmt'. This experiment has 2 sections and 3 trials (1 trial for the 1st section, 2 trials for the 2nd section). Each trial has 6 stimuli (1 WAV file + 5 PNG files). It's a pseudo experiment just for showing how to set up 'config.py', 'EventFile.py', and code an experiment module to present stimuli and take responses from a participant.


For some structual understanding, see below.

  1. Setting up 'config.py'

"dialogClass": ['ExptModule.Dialog_classes', 'NameAgeDialog'], --> this will be used for the questionnaire-dialog at the beginning of the experiment. 'ExptModule(Folder-name).Dialog_classes(Python-file-name)', 'NameAgeDialog(Class-name of Dialog_classes)'

"responsePanelClass" : ['ExptModule.R_ButtonPanelClass', 'Gesche_TwoButtonPanel'], --> this will be used for the response-panel. 'ExptModule(Folder-name).R_ButtonPanelClass(Python-file-name)', 'Gesche_TwoButtonPanel(Class-name)'

"mediaPanelClass" : ['ExptModule.M_DisplayImageClass', 'DisplayImagePanel'], --> this will be used for the media-panel. 'ExptModule(Folder-name).M_DisplayImageClass(Python-file-name)', 'DisplayImagePanel(Class-name)'

"operating_system": "mac", --> either mac, windows, or linux

"INPUT_PATH": "input/", --> input-folder path

"OUTPUT_PATH": "output/", --> output-folder path

"mainPanel_bgColor" : "hex/FF,FF,FF", --> Determine the background color in hexadecimal code.

"hide_cursor" : True, --> Determine whether it'll hide the cursor on the screen or not.

"window_style" : "normal", --> Determine the main window's style. 'normal' or 'minimize'. 'minimize' on MAC(OSX) will only show the contents of the window itself. It will not even show the title-bar. This 'minimize' effect can be done by setting 'fullscreen':True.

"comm_Arduino" : False, --> When it's true, a feedback will be give through Arduino-chip such as one in the Feeder. Currently, the message going to the Arduino chip is simply '1' to activate a motor. It was implemented for giving a food reward to an animal by activating a motor of a feeder.

"onset_of_RT_measurement" : 0, --> This item means that The activation of response panel and trial-start-time starts at the time which the value of the calculation, (length of the auditory stimulus + onset_of_RT_measurement)

"fullscreen":False, --> decides full-screen-mode.

"2nd_monitor" : True, --> using the secondary monitor or not

"2nd_monitor_monitoring" : True, --> Init 'Display_monitoring' class to monitor certain things on the 1st monitor. if '2nd_monitor' is False, this option doesn't get applied.

"displayWidth" : 1100, --> when the full-screen-mode is False, this will decide the width of the window.

"displayHeight" : 700, --> when the full-screen-mode is False, this will decide the height of the window.

"responsePanelPosX" : 0.5, --> the X-value of the responsePanel. 1 means the end of the window.

"responsePanelPosY" : 0.85, --> the Y-value of the responsePanel. 1 means the end of the window.

"buttonBox" : True, --> decide the usage of the ButtonBox. (ButtonBox module is not included in the distribution.)

"neg_Visual_FB_Type" : "solid_color:hex/FF,00,00", --> if this starts "flicker", visual-negative-feedback will be flickering-window between the defined color and the white. if it starts with "solid_color", simplay show solid color for a second. In both cases, color followed after ':'-symbol will be the color of change. It could be either name of the color such as 'red' or 'blue', or hexadecimal code such as 'hex/FF,00,00'

"post_Q" : False, --> If this is True, Experimenter will call 'show_post_Q' function of 'mediaPanel' to show questionnaire after the whole experiment session

"key_binding" : [ ["None.1", "expmt_module.OnTest1"], ["None.2", "expmt_module.OnTest2"] ], --> List of key bindings. ex) ["None.1", "expmt_module.OnTest1"] : When '1' key is pressed, call the experiment module's 'OnTest1' function. ["Ctrl.S", "main.OnSave"] : When 'Ctrl+S' key is pressed, call 'E_UI' class's 'OnSave' Function.

"randomizeSections" : False,

"randomizeTrials" : True,

"randomizeStimuli" : True,

"resultHeader" : "Section, Trial, Reaction-Time, correctResponse, Response, Correctness, File-Names presented" --> This will be the header of the data-file (csv-format). If you want to add more values in 'Response' from the subject, for example - 'Choice, SelectedPosition, SelectedColor'. Specify resultHeader as "resultHeader" : "Section, Trial, Reaction-Time, correctResponse, Choice, SelectedPosition, SelectedColor, Correctness, File-Names presented". Then, you have to modify the class in your 'mediaPanel' (or 'responsePanel') to make it to send 'response' value as csv-format containing all those 3 fields. self.parent.HandleGUIResponse( str(Choice) + ", " + str(SelectedPosition) + ", " + str(Sele tedColor) )

  1. Setting up 'EventFile.py'

'EventFile.py' file has a set of variables to form a python dictionary, which contains information of all the sections, trials, and stimuli.

Please modify included 'EventFile.py', which works with included '_sample_expmt' to make it to work with your own experiment design.

  1. Stimuli files

Put stimuli files into a folder in 'input' folder. These files' names should match with the code in 'EventFile.py', collecting these file paths.

  1. Individual experiment module

Modify included file, 'ExptModule/_sample_expmt/_sample_expmt.py'.

Short descriptions of modules, which can be used in an experiment module, are as following.

'Common_func.py' - (Function) get_time_stamp : returns a timestamp string, formatted as 'yyyy_MM_dd_hh_mm_ss_SSSSSS' - (Function) writeFile : writing text in a given file path - (Function) uppsercaseTuples & uppercaseDict : passed dictionary will be returned with upper-case key - (Function) HexToDec : convert hexadecimal code to decimanl number - (Function) try_open & serial_scan : for a connection with Arduino-chip - (Function) chooseFile : choosing a file using wx.FileDialog - (Function) generateHash : generates a unique ID - (Function) destroy_objects : destorys all the objects with consecutive IDs - (Function) GridCoordToIndex & GridIndexToCoord : conversion between index number and western reading standard coordinates - (Function) dgreesToRadians & radiansToDegrees : conversion between degrees and radians - (Function) change_bg_color : changing the background colour of a givien panel (wx.Panel) - (Function) monitoring_func : for monitoring the main monitor in the secondary monitor, when the experimenter has to monitor the participant's clicks while the primary monitor is not visible to the experimenter - (Function) save : save the important variables such as section index, trial index, whole exptDetails dictionary. - (Function) load : load the saved file

'Dialog_classes.py' - (Class) PopupDialog : shows a short message - (Class) NameAgeDialog : for asking name and age before starting an experiment session - (Class) Post_Q_Dialog : for asking a set of questions after an experiment session

'MAS.py' - (Function) load_sound : returns the length of the sound and the loaded wx.Sound object - (Class) Output_AudioData : class for selecting and opening streams using device name, loading sound files, and playing with Thread. pyAudio is used. - (Class) Input_AudioData : class for listening from a microphone and recording it to WAV file. pyAudio is used.

'MOPSI.py' - (Class) MOP_NodeBox_Functions : class for drawing using wx.ClientDC. functions in this class are similar to the NodeBox functions

'MVS.py' - (Function) load_img : returns loaded image (wx.StaticBitmap) - (Function) load_movie : returns loaded movie (wx.media.MediaCtrl) - (Function) load_crosshair : returns a loaded crosshair image at the center of the screen - (Function) img2buffer : returns width, height, and RGB(A) data of input image (wx.Image)

'Validator_classes.py' - (Class) TextValidator : made to connect with wx.TextCtrl for accepting only letters - (Class) NumberValidator : made to connect with wx.TextCtrl for accepting only natural numbers - (Class) CharValidator : made to connect with wx.TextCtrl for validating every character input with a flag ('no-letter' or 'no-digit')

'WXCOG.py' - (Function) generate_button : returns a wx.Button - (Function) generate_button_likert_scale : returns a list of wx.Buttons to form a Likert-scale - (Class) TimeoutBar : generates a timeout bar using wx.Gauge - (Class) Slider_class : generates a slider as a user-input