From 1f8d0b68ad46590794ad9d5926faba7f8b045aac Mon Sep 17 00:00:00 2001 From: Thomas Cokelaer Date: Mon, 25 Jun 2018 12:54:04 +0200 Subject: [PATCH] fix test --- test/test_ensembl.py | 5 +++-- 1 file changed, 3 insertions(+), 2 deletions(-) diff --git a/test/test_ensembl.py b/test/test_ensembl.py index 1db6bf8..ae2ed2b 100644 --- a/test/test_ensembl.py +++ b/test/test_ensembl.py @@ -203,11 +203,12 @@ def test_sequences(ensembl): seq = ensembl.get_sequence_by_id('ENSE00001154485', expand_5prime=10, frmt='fasta', type='genomic') - assert seq == u'>ENSE00001154485 chromosome:GRCh38:7:140924566:140924774:-1\nCCCAGCTCTCCGCCTCCCTTCCCCCTCCCCGCCCGACAGCGGCCGCTCGGGCCCCGGCTC\nTCGGTTATAAGATGGCGGCGCTGAGCGGTGGCGGTGGTGGCGGCGCGGAGCCGGGCCAGG\nCTCTGTTCAACGGGGACATGGAGCCCGAGGCCGGCGCCGGCGCCGGCGCCGCGGCCTCTT\nCGGCTGCGGACCCTGCCATTCCGGAGGAG\n' + assert seq == ">ENSE00001154485 chromosome:GRCh38:7:140924566:140924752:-1\nCCCTCCCCGCCCGACAGCGGCCGCTCGGGCCCCGGCTCTCGGTTATAAGATGGCGGCGCT\nGAGCGGTGGCGGTGGTGGCGGCGCGGAGCCGGGCCAGGCTCTGTTCAACGGGGACATGGA\nGCCCGAGGCCGGCGCCGGCGCCGGCGCCGCGGCCTCTTCGGCTGCGGACCCTGCCATTCC\nGGAGGAG\n" + res = ensembl.get_sequence_by_id('ENSG00000157764', frmt='seqxml', type='protein', multiple_sequences=1) - assert 'XSTT' in res + assert 'MAAL' in res res = ensembl.get_sequence_by_id('GENSCAN00000000001', frmt='json', object_type='predictiontranscript', db_type='core',