Name		Name	Last commit message	Last commit date
Latest commit History 87 Commits
one-to-one_test		one-to-one_test
output		output
refs		refs
.gitignore		.gitignore
0_install_pkgs.R		0_install_pkgs.R
1_align_hisat.R		1_align_hisat.R
2_convert_and_filter.R		2_convert_and_filter.R
3_map.R		3_map.R
LICENSE		LICENSE
README.md		README.md
get_gene_lengths.R		get_gene_lengths.R
get_top_genes.R		get_top_genes.R
sample_summary.txt		sample_summary.txt
top_genes_comparison.xlsx		top_genes_comparison.xlsx

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Comparative transcriptomics reveal differential gene expression among Plasmodium vivax geographical isolates and implications on erythrocyte invasion mechanisms

Daniel Kepple, Colby T. Ford, Jonathan Williams, Beka Abagero,
Shaiou Li, Delenasaw Yewhalaw, and Eugenia Lo

PlOS Neglected Tropical Diseases: https://journals.plos.org/plosntds/article?id=10.1371/journal.pntd.0011926

Isolates:

Ethiopian Isolates: https://www.ncbi.nlm.nih.gov/bioproject/PRJNA784582/
Brazilian Isolates: https://www.ncbi.nlm.nih.gov/bioproject/PRJNA574970/
Cambodian Isolates: https://www.ebi.ac.uk/ena/browser/view/PRJEB32240?show=reads

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Companion repository for: "Comparative transcriptomics reveal differential gene expression among Plasmodium vivax geographical isolates and implications on erythrocyte invasion mechanisms" by Kepple, et al.

journals.plos.org/plosntds/article?id=10.1371/journal.pntd.0011926

bioinformatics rna-seq malaria transcriptomics plasmodium-vivax

GPL-3.0 license

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