@combogenomics

Combo

Florence Computational Biology Group

Pinned repositories

  1. medusa

    A draft genome scaffolder that uses multiple reference genomes in a graph-based approach.

    Java 16 6

  2. DuctApe

    Analyze and link genomics and phenomics experiments

    Python 4 2

  3. medusa-webapp

    Medusa web server

    Python 1

  4. contiguator-webapp

    CONTIGuator web server

    Python 1 1

  • Analyze and link genomics and phenomics experiments

    Python 4 2 BSD-2-Clause Updated Feb 1, 2018
  • Medusa web server

    Python 1 MIT Updated Jan 19, 2018
  • A draft genome scaffolder that uses multiple reference genomes in a graph-based approach.

    Java 16 6 GPL-3.0 1 issue needs help Updated Jan 12, 2018
  • CONTIGuator web server

    Python 1 1 MIT Updated Dec 22, 2016
  • TeX 1 Updated Nov 23, 2015
  • Scripts and libraries to perform motif searches inside genomes

    Python 1 Updated Aug 28, 2015
  • Data for the analysis on the Sinothizobium meliloti regulatory network

    Updated Aug 28, 2015
  • Various snippets or random scripts

    Python 1 Updated Jul 23, 2015
  • Bacterial genomes finishing tool for structural insights on draft genomes

    Python 13 4 GPL-3.0 Updated Mar 5, 2015
  • A series of benchmarks for the Medusa scaffolder https://github.com/combogenomics/medusa

    Updated Jan 28, 2015
  • Recursive seeker for tar archives. It supports bz2 and gzip compression formats.

    Java BSD-3-Clause Updated Jan 19, 2015
  • Reproducible analysis on the genome/phenome of four bacterial datasets

    Python 1 Updated Apr 6, 2014
  • A reproducible comparison between the opm package and the DuctApe suite.

    Python 1 Updated Nov 6, 2013
  • Java 1 Updated Sep 20, 2013