Pinned repositories

  1. common-workflow-language

    Repository for the CWL standards. Use https://www.biostars.org/t/cwl/ for support 😊

    Python 786 144

  2. cwlviewer

    A web application to view and share Common Workflow Language workflows

    Java 18 7

  3. cwltool

    Common Workflow Language reference implementation

    Python 112 109

  4. acd2cwl

    CWL generator for ACD (EMBOSS) files

    Python 2

  5. cwl-upgrader

    Upgrade CWL draft-3 syntax to v1.0 syntax

    Python 1 1

  6. cwl2argparse

    cwl2argparse generates an argparse definition from CWL tool arguments that can be pasted in a Python program and used

    Python 6 2

  • Shell 1 1 Apache-2.0 Updated Sep 25, 2018
  • Common Workflow Language reference implementation

    Python 112 109 Apache-2.0 26 issues need help Updated Sep 25, 2018
  • cwl-tes submits your tasks to a TES server. Task submission is parallelized when possible.

    Python 9 10 Apache-2.0 Updated Sep 25, 2018
  • cwlprov: Command line tool and Python API to explore Research Objects containing provenance of Common Workflow Language executions

    Python 1 Apache-2.0 Updated Sep 25, 2018
  • Implementation of the GA4GH Workflow Execution Service, a REST service for running workflows

    Python 15 15 Apache-2.0 Updated Sep 24, 2018
  • Semantic Annotations for Linked Avro Data

    Python 20 24 Apache-2.0 2 issues need help Updated Sep 23, 2018
  • Upgrade CWL draft-3 syntax to v1.0 syntax

    Python 1 1 Apache-2.0 Updated Sep 21, 2018
  • Auto-generated Avro classes for manipulating CWL (starting with Java). Works with v1.0

    Java 3 Apache-2.0 Updated Sep 18, 2018
  • Repository for the CWL standards. Use https://www.biostars.org/t/cwl/ for support 😊

    Python 786 144 Apache-2.0 4 issues need help Updated Sep 13, 2018
  • In development version of the future CWL v1.1 specification

    Python 3 Apache-2.0 Updated Sep 12, 2018
  • Profile for provenance research object of a CWL workflow run

    2 1 Apache-2.0 Updated Sep 10, 2018
  • HTML 2 6 Updated Sep 6, 2018
  • Common Workflow Language 1 1 Apache-2.0 Updated Aug 27, 2018
  • The CWL v1.0 user guide

    Python 5 14 Updated Aug 21, 2018
  • Python 1 GPL-3.0 Updated Aug 9, 2018
  • Generation of CWL programmatically. Available types: CommandLineTool and DockerRequirement

    Python 17 10 MIT Updated Aug 2, 2018
  • A web application to view and share Common Workflow Language workflows

    Java 18 7 Apache-2.0 Updated Aug 2, 2018
  • CWL logo source

    1 Updated Jul 26, 2018
  • Abstract and presentation material for the Bioinformatics Open Source Conference 2015

    Makefile 1 3 Updated Jul 26, 2018
  • Java SDK for CWL

    Java 8 5 Apache-2.0 Updated Jul 26, 2018
  • avro

    Forked from apache/avro

    Mirror of Apache Avro

    Java 765 Apache-2.0 Updated Jul 26, 2018
  • Fork of Galaxy (http://galaxyproject.org/) attempting to implement the CWL spec.

    Python 9 472 Updated Jul 5, 2018
  • Common Workflow Language dependency manager

    Python 3 1 Apache-2.0 Updated Jun 30, 2018
  • Community maintained workflows & tools (with examples)

    Common Workflow Language 90 48 Apache-2.0 Updated Jun 27, 2018
  • Framework for testing CWL tools and workflows

    Python 6 10 Apache-2.0 Updated Jun 1, 2018
  • Holds public material generated by and for the CWL board.

    HTML Updated Apr 26, 2018
  • Lightweight CWL

    Python Apache-2.0 Updated Aug 1, 2017
  • Python 1 Apache-2.0 Updated Jul 31, 2017
  • Convert Workflow Definition Language (WDL) to CWL

    Python 19 3 Apache-2.0 Updated Jun 16, 2017
  • 1 2 Apache-2.0 Updated Feb 15, 2017