From 42f50842a133bdec606d42a3854a84c398ff4492 Mon Sep 17 00:00:00 2001 From: "Michael R. Crusoe" <1330696+mr-c@users.noreply.github.com> Date: Tue, 2 Oct 2018 13:47:41 +0300 Subject: [PATCH 1/2] add containers best practives --- _extras/recommended-practices.md | 2 ++ 1 file changed, 2 insertions(+) diff --git a/_extras/recommended-practices.md b/_extras/recommended-practices.md index 292e51bf..0ce35e91 100644 --- a/_extras/recommended-practices.md +++ b/_extras/recommended-practices.md @@ -51,6 +51,8 @@ For more examples of providing metadata within CWL descriptions, see the [Metada ☐ Complex workflows with individual components which can be abstracted should utilise the [`SubworkflowFeatureRequirement`][subworkflow] to make their workflow modular and allow sections of them to be easily reused. +☐ Software containers should be made to be conformant to the ["Recommendations for the packaging and containerizing of bioinformatics software"][containers] (also useful to other disciplines). + [apache-license]: https://spdx.org/licenses/Apache-2.0.html [license-example]: https://github.com/ProteinsWebTeam/ebi-metagenomics-cwl/blob/master/workflows/emg-assembly.cwl#L200 [scicrunch-issue]: https://github.com/common-workflow-language/common-workflow-language/issues/scicrunch.org From 2dcb75bbda468455a7e043f3543d8ee15e425216 Mon Sep 17 00:00:00 2001 From: "Michael R. Crusoe" <1330696+mr-c@users.noreply.github.com> Date: Tue, 2 Oct 2018 14:02:20 +0300 Subject: [PATCH 2/2] add containers link --- _extras/recommended-practices.md | 1 + 1 file changed, 1 insertion(+) diff --git a/_extras/recommended-practices.md b/_extras/recommended-practices.md index 0ce35e91..6d6dd3c4 100644 --- a/_extras/recommended-practices.md +++ b/_extras/recommended-practices.md @@ -53,6 +53,7 @@ For more examples of providing metadata within CWL descriptions, see the [Metada ☐ Software containers should be made to be conformant to the ["Recommendations for the packaging and containerizing of bioinformatics software"][containers] (also useful to other disciplines). +[containers]: https://doi.org/10.12688/f1000research.15140.1 [apache-license]: https://spdx.org/licenses/Apache-2.0.html [license-example]: https://github.com/ProteinsWebTeam/ebi-metagenomics-cwl/blob/master/workflows/emg-assembly.cwl#L200 [scicrunch-issue]: https://github.com/common-workflow-language/common-workflow-language/issues/scicrunch.org