SeqAn Headers for R
This package provides R with access to SeqAn v2.4 header files. SeqAn is an open source C++ library of efficient algorithms and data structures for the analysis of sequences with the focus on biological data.
RSeqAn can be used via the
LinkingTo: field in the
DESCRIPTION field of an R package. Note that the compiler will need to compile as C++14. This can be done in R as
We recommend installing the release version through Bioconductor. Instructions are provided on their page.
If you have
devtools, then the development version can be installed from here by running:
This version contains
Rcpp::wrap functions for
NEWS for release history.
To cite this package from within R, enter
citation("RSeqAn"). Citation is also provided below:
Guang A (2018). RSeqAn: R SeqAn. R package version 1.2.0.
Please do not forget to cite SeqAn if you use this package in your acedemic work, even if only in auxiliary tools or pipelines: https://doi.org/10.1016/j.jbiotec.2017.07.017