From 01d752284ed061b52ec8ba32331b4a18948362d7 Mon Sep 17 00:00:00 2001 From: dengzq1234 Date: Tue, 18 Jul 2023 11:28:10 +0200 Subject: [PATCH 1/2] organize installation in latest version --- README.md | 26 +++++++++++++------------- 1 file changed, 13 insertions(+), 13 deletions(-) diff --git a/README.md b/README.md index 277d084..895d14e 100644 --- a/README.md +++ b/README.md @@ -112,19 +112,19 @@ Check other tutorial scripts ### Manual installation #### Install ETE v4 -To install ETE you can follow these steps: - - Download this repository (https://github.com/etetoolkit/ete/releases) - - Build and install ete4 from the repository's root directory with following command: - ``` - wget https://github.com/etetoolkit/ete/archive/refs/tags/4.1.0-beta.tar.gz - tar -zxvf 4.1.0-beta.tar.gz - cd ete-4.1.0-beta/ - python setup.py install - ``` - or - ``` - pip install https://github.com/etetoolkit/ete/archive/refs/tags/4.1.0-beta.tar.gz - ``` +Quick way +``` +pip install https://github.com/etetoolkit/ete/archive/ete4.zip +``` +For local development +To install ETE in a local directory to help with the development, you can: + +- Clone this repository (git clone https://github.com/etetoolkit/ete.git) +- Install dependecies + - If you are using conda: `conda install -c conda-forge cython bottle brotli numpy pyqt` + - Otherwise, you can install them with `pip install ` + - Build and install ete4 from the repository's root directory: `pip install -e .` + (In Linux there may be some cases where the gcc library must be installed, which can be done with `conda install -c conda-forge gcc_linux-64`) #### Install TreeProfiler From b98a740168d923f1633e2f86fed698b863924244 Mon Sep 17 00:00:00 2001 From: dengzq1234 Date: Tue, 18 Jul 2023 11:29:14 +0200 Subject: [PATCH 2/2] matplotlib is dependency --- README.md | 6 +++--- 1 file changed, 3 insertions(+), 3 deletions(-) diff --git a/README.md b/README.md index 895d14e..01d8e93 100644 --- a/README.md +++ b/README.md @@ -124,16 +124,16 @@ To install ETE in a local directory to help with the development, you can: - If you are using conda: `conda install -c conda-forge cython bottle brotli numpy pyqt` - Otherwise, you can install them with `pip install ` - Build and install ete4 from the repository's root directory: `pip install -e .` - + (In Linux there may be some cases where the gcc library must be installed, which can be done with `conda install -c conda-forge gcc_linux-64`) #### Install TreeProfiler Install dependencies ``` # install BioPython, selenium, scipy via conda -conda install -c conda-forge biopython selenium scipy +conda install -c conda-forge biopython selenium scipy matplotlib # or pip -pip install biopython selenium scipy +pip install biopython selenium scipy matplotlib ``` Install TreeProfiler