Add region query benchmark #8
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Signed-off-by: AdityaPandeyCN <adityapand3y666@gmail.com>
Signed-off-by: AdityaPandeyCN <adityapand3y666@gmail.com>
vgvassilev
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Sep 24, 2025
benchmark/region_query_benchmark.cxx
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| #ifdef _WIN32 | ||
| #define NULL_DEVICE "NUL" | ||
| #else | ||
| #define NULL_DEVICE "/dev/null" | ||
| #endif |
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IIRC, this was already put somewhere. Can we make sure we reuse code?
Signed-off-by: AdityaPandeyCN <adityapand3y666@gmail.com>
Signed-off-by: AdityaPandeyCN <adityapand3y666@gmail.com>
AdityaPandeyCN
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Oct 4, 2025
Signed-off-by: AdityaPandeyCN <adityapand3y666@gmail.com> clang format Signed-off-by: AdityaPandeyCN <adityapand3y666@gmail.com> code organization Signed-off-by: AdityaPandeyCN <adityapand3y666@gmail.com> clang changes Signed-off-by: AdityaPandeyCN <adityapand3y666@gmail.com> Add region query benchmark (compiler-research#8) * query performance Signed-off-by: AdityaPandeyCN <adityapand3y666@gmail.com> * clang format Signed-off-by: AdityaPandeyCN <adityapand3y666@gmail.com> * code organization Signed-off-by: AdityaPandeyCN <adityapand3y666@gmail.com> * clang changes Signed-off-by: AdityaPandeyCN <adityapand3y666@gmail.com> --------- Signed-off-by: AdityaPandeyCN <adityapand3y666@gmail.com> add chromosome based file splitting Signed-off-by: AdityaPandeyCN <adityapand3y666@gmail.com> delete example sam file Signed-off-by: AdityaPandeyCN <adityapand3y666@gmail.com> clang changes Signed-off-by: AdityaPandeyCN <adityapand3y666@gmail.com> test file changes Signed-off-by: AdityaPandeyCN <adityapand3y666@gmail.com> clang changes Signed-off-by: AdityaPandeyCN <adityapand3y666@gmail.com>
vgvassilev
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Oct 16, 2025
* Adding chromosome base file splitting Signed-off-by: AdityaPandeyCN <adityapand3y666@gmail.com> clang format Signed-off-by: AdityaPandeyCN <adityapand3y666@gmail.com> code organization Signed-off-by: AdityaPandeyCN <adityapand3y666@gmail.com> clang changes Signed-off-by: AdityaPandeyCN <adityapand3y666@gmail.com> Add region query benchmark (#8) * query performance Signed-off-by: AdityaPandeyCN <adityapand3y666@gmail.com> * clang format Signed-off-by: AdityaPandeyCN <adityapand3y666@gmail.com> * code organization Signed-off-by: AdityaPandeyCN <adityapand3y666@gmail.com> * clang changes Signed-off-by: AdityaPandeyCN <adityapand3y666@gmail.com> --------- Signed-off-by: AdityaPandeyCN <adityapand3y666@gmail.com> add chromosome based file splitting Signed-off-by: AdityaPandeyCN <adityapand3y666@gmail.com> delete example sam file Signed-off-by: AdityaPandeyCN <adityapand3y666@gmail.com> clang changes Signed-off-by: AdityaPandeyCN <adityapand3y666@gmail.com> test file changes Signed-off-by: AdityaPandeyCN <adityapand3y666@gmail.com> clang changes Signed-off-by: AdityaPandeyCN <adityapand3y666@gmail.com> * added bam vs ram file benchmark for chromosome based file splitting Signed-off-by: AdityaPandeyCN <adityapand3y666@gmail.com> * clang format changes Signed-off-by: AdityaPandeyCN <adityapand3y666@gmail.com> * made benchmarks fair Signed-off-by: AdityaPandeyCN <adityapand3y666@gmail.com> * clang changes Signed-off-by: AdityaPandeyCN <adityapand3y666@gmail.com> * parallel write code Signed-off-by: AdityaPandeyCN <adityapand3y666@gmail.com> * version update Signed-off-by: AdityaPandeyCN <adityapand3y666@gmail.com> * version update Signed-off-by: AdityaPandeyCN <adityapand3y666@gmail.com> * use parallel writer Signed-off-by: AdityaPandeyCN <adityapand3y666@gmail.com> * clang changes Signed-off-by: AdityaPandeyCN <adityapand3y666@gmail.com> * clang changes Signed-off-by: AdityaPandeyCN <adityapand3y666@gmail.com> * samtools threading Signed-off-by: AdityaPandeyCN <adityapand3y666@gmail.com> * clang format changes Signed-off-by: AdityaPandeyCN <adityapand3y666@gmail.com> --------- Signed-off-by: AdityaPandeyCN <adityapand3y666@gmail.com>
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This PR adds region query performance of RNTuple vs TTree benchmark.