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.. toctree::
   :maxdepth: 1
   :caption: Getting Started

   install
   databases

.. toctree::
   :maxdepth: 1
   :caption: Tutorials

   pairedend_97
   denoising_illumina
   singleend
   phyloseq
   table
   picrust

.. toctree::
   :maxdepth: 1
   :caption: In Depth

   otu
   formats
   changes

.. toctree::
   :glob:
   :maxdepth: 1
   :caption: Command reference

   commands/*