The dbtoolkit application enables easy manipulation of fasta sequence database in a user-friendly environment. Sequence databases can be merged, shuffled, truncated, etc... Furthermore, for more experienced users, the Java API provides a well documented and easy-to-use environment for customized fasta database manipulations.
Martens et al. DBToolkit: processing protein databases for peptide-centric proteomics. Bioinformatics (2005) vol. 21 (17) pp. 3584-5 (pid: 16030071)
Download version 4.2.5 of dbtoolkit 2.0 as a zip file here.
See the usage file for additional information on how to use the library.
The dbtoolkit project is grateful for the support by: