Java API for MS/MS search results by Mascot (Matrix Science).
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Project Description

Proteomics bioinformatics deals with organising and analysing large amounts of information generated during proteomic analyses. The vast amounts of mass spectrometry data are typically interpreted by database search algorithms such as Mascot Server from Matrix Science. The results of such a search are presented in an user-friendly HTML page, yet, this is inconvenient when further processing is required. Therefore we have developed the MascotDatfile library which transforms a flat file into a dynamic object model.

Helsens et al. MascotDatfile: an open-source library to fully parse and analyse MASCOT MS/MS search results. Proteomics (2007) vol. 7 (3) pp. 364-6 (PUBMED ID:17203510)

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Download Version Release info
download 3.6.0 - All platforms Release notes

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See the wiki for additional information on how to setup, run and configure MascotDatfile.

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Project Support

The MascotDatfile project is grateful for the support by:

Compomics VIB Ghent University
compomics vib

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IntelliJ Netbeans Java Maven
intellij netbeans java maven

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