@thilus thilus released this Oct 10, 2018 · 1 commit to master since this release

Assets 3

MPA Portable version 1.8.1 has been released with the following update:

  • UniProt JAPI was updated to the latest version 1.0.22 (fixing errors occurring during the retrieval of UniProt meta-information)

@thilus thilus released this Nov 16, 2017 · 11 commits to master since this release

Assets 3

MPA Portable version 1.8.0 has been released with the following features/bugfixes:

  • MS-GF+ parameter for fragmentation method (CID, ETD, HCD) can be chosen on the command line.
  • UniProt JAPI was updated to the latest version 1.0.16 (fixing errors occurring during the retrieval of UniProt meta-information)
  • Batch scripts are now available in the main folder of the software.
  • Various bugfixes and improvements within the code.

@thilus thilus released this Aug 18, 2017 · 7 commits to portable since this release

Assets 3

MPA Portable version 1.7.0 has been released with the following new features:

  • Added taxon-based two-step searching feature (in addition to the protein-based strategy).
  • MapDB was updated to the latest version (ver. 3.0.5) to accelerate the peptide indexing.
  • Peptide indexing is now available as optional feature on the command line.
  • Disabled emPAI and NSAF quantification features in the GUI to accelerate the results retrieval.

@thilus thilus released this Jul 7, 2017 · 11 commits to portable since this release

Assets 3

MPA Portable version 1.6.0 has been released with the following new features:

  • Added new import function for mzIdentML files: this feature supports the re-analysis of result identification data stored in mzIdentML format.
  • Added new Import menu which contains the import function for "MPA Experiment" (see Release version 1.5.0).
  • Added the feature to import MPA experiment files without requiring the corresponding MGF files.
  • Added the indexing of peptide sequences for FASTA databases: this feature allows to retrieve all protein identifications contained in the reference proteomes (and more than the default hits suggested by the search engines).

@thilus thilus released this May 3, 2017 · 25 commits to master since this release

Assets 3

MPA Portable version 1.5.0 has been released with the following new features:

  • Added "Import MPA Experiment" feature: saved experiment files (*.mpa) can now be loaded into into a project
  • Updated "Export MPA Experiment" feature: experiment files (*.mpa) are stored together with the original MS/MS spectra
  • Added "Update UniProt Entries" feature (see MetaProteomeAnalyzerCLI for details)
  • Various bugfixes and GUI improvements

@thilus thilus released this Feb 27, 2017 · 20 commits to portable since this release

Assets 3

MPA Portable version 1.4.1 has been released.

@thilus thilus released this Feb 10, 2017 · 24 commits to portable since this release

Assets 3

MPA Portable version 1.4.0 has been released with the following new features:

  • Added command line interface to MPA (see MetaProteomeAnalyzerCLI for details)
  • Various bugfixes regarding the FASTA indexing and two-step searching workflow
  • X!Tandem was updated to the latest version ALANINE (2017.02.01)