Skip to content
Mass spectrometry based proteomics information management system.
Java Mathematica TeX
Branch: master
Clone or download
Fetching latest commit…
Cannot retrieve the latest commit at this time.
Permalink
Type Name Latest commit message Commit time
Failed to load latest commit information.
manual
rdbms
src code cleanup Apr 17, 2015
.gitignore
LICENSE-2.0.txt
README.md Update README.md Apr 15, 2015
pom.xml Update pom.xml Jun 23, 2015

README.md

ms-lims

logo


Project Description

The ms_lims project provides a lightweight, portable yet production-grade solution for managing mass spectrometry based proteomics data.

MS-based proteomics produces large amounts of mass spectra that require processing, identification and possibly quantification before interpretation can be undertaken. High-throughput studies require automation of these various steps, and management of the data in association with the results obtained. We here present ms_lims, a freely available, open-source system based on a central database to automate data management and processing in MS-driven proteomics analyses.

Citation

Helsens, K., Colaert, N., Barsnes, H., Muth, T., Flikka, K., Staes, A., Timmerman, E., Wortelkamp, S., Sickmann, A., Vandekerckhove, J., et al. (2010). ms_lims, a simple yet powerful open source LIMS for mass spectrometry-driven proteomics. Proteomics epub (pid: 20058248).

Go to top of page


Downloads

Download ms-lims 7.7.7 here.

Go to top of page


Usage

  • The zip file contains the ms-lims jar file and all the libraries needed to run the tool. Double clicking this resulting jar file will start ms-lims.
  • Download the manual here.
  • Download the database schema here.
  • Check out the release notes and database updates in the wiki section.

Troubleshooting

Please report any issues or requests in the issues section. We will attempt to come up with a solution as soon as possible.

Go to top of page


Related Projects

Ms-lims makes use of compomics-utilities.

You might also find some of the following projects interesting: Peptizer, dbtoolkit, ms-lims, Rover and PeptideShaker

Go to top of page


Project Support

The ms-lims project is grateful for the support by:

Compomics VIB Ghent University
compomics vib ugent

Go to top of page


IntelliJ Netbeans Java Maven
intellij netbeans java maven

Go to top of page

You can’t perform that action at this time.