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Beta release 20200320 of CMP3 #28

Merged
merged 41 commits into from Mar 26, 2020
Merged

Beta release 20200320 of CMP3 #28

merged 41 commits into from Mar 26, 2020

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@sebastientourbier
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sebastientourbier commented Mar 12, 2020

Pull request for the beta release 20200320 of CMP3 which includes:

  • A major revision of continuous integration testing and deployment with CircleCI which integrates an in-house dataset published and available on Zenodo @ https://doi.org/10.5281/zenodo.3708962.
  • Multiple bug fixes and enhancements incl. close #30 , update mrtrix3 to RC3 version, bids-app run command generated by the GUI, location of the configuration and log files to be more BIDS compliant
@sebastientourbier sebastientourbier linked an issue that may be closed by this pull request Mar 20, 2020
10 of 10 tasks complete
In process to fix error:

find: ‘/tmp/data/ds-sample/derivatives/nipype/sub-01/ses-01/diffusion_pipeline/preprocessing_stage/motion_correction/motion_corrected.nii.gz.mat’: Permission denied

obtained in last circleci test job (https://app.circleci.com/pipelines/github/connectomicslab/connectomemapper3/126/workflows/95b53b4f-5fa2-462b-a2e3-82335c5dd224/jobs/314)

This is indeed very weird as /tmp/data/ds-sample/derivatives/nipype/sub-01/ses-01/diffusion_pipeline/preprocessing_stage/motion_correction/motion_corrected.nii.gz.mat does not exist (so how "find" command does find it?)
@sebastientourbier sebastientourbier merged commit 1b3d1e2 into master Mar 26, 2020
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ci/circleci: build Your tests passed on CircleCI!
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ci/circleci: get_data Your tests passed on CircleCI!
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ci/circleci: test Your tests passed on CircleCI!
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@sebastientourbier sebastientourbier deleted the beta-20200320 branch Mar 26, 2020
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