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connor122721/README.md

Hello 👋

Welcome to my GitHub profile! I am a bioinformatics enthusiast with a passion for NGS analyses, non-model genomics, and medical genomics.

🧬 About Me

  • 🔭 I’m currently working on various projects related to genomics and bioinformatics in human genomes (eQTLS mostly).
  • 🌱 I’m currently learning Nextflow and excited to dive deeper into biostatistics.
  • 👯 I’m looking to collaborate on exciting bioinformatics projects, especially working with eQTLs and colocalization.
  • 📫 How to reach me: csm6hg@virginia.edu
  • ⚡ Fun fact: I love to mountain bike and I am training for a half marathon.

🛠️ Skills

  • NGS Analyses: Expertise in analyzing next-generation sequencing data.
  • Non-Model Genomics: Skilled in handling and interpreting genomic data from non-model organisms.
  • Medical Genomics: Experienced in analyzing genomic data for medical research.

🌟 Highlighted Projects

🚀 Languages and Tools

  • Languages: R, Python, Bash
  • Tools: Nextflow, Tidyverse

📊 GitHub Stats

Connor's Top Languages

🌐 Let's Connect

Feel free to explore my repos and reach out if you have any questions or collaboration ideas!

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  1. nf_eqtls nf_eqtls Public

    Nextflow pipeline for disease eQTL mapping and follow up analyses

    Jupyter Notebook

  2. SharedPolymorphismsDaphnia SharedPolymorphismsDaphnia Public

    Evolutionary genomics of shared mutations within the Daphnia pulex species complex.

    R

  3. rsid_api_ensembl rsid_api_ensembl Public

    Extract rsIDs from chromosome and position information

    Jupyter Notebook

  4. GeneFamilyEvolution GeneFamilyEvolution Public

    Daphnia gene family evolution.

    R

  5. drosophila_bottleneck_simulations drosophila_bottleneck_simulations Public

    Simulate overwintering bottlenecks in wild fly populations

    R

  6. DrosophilaGenomics DrosophilaGenomics Public

    Inversion status and de novo assembly of Drosophila melanogaster

    Shell