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1. tsa_pairhmm tsa_pairhmm Public

   A pair hidden Markov model for identifying short template switch events from mutation clusters in pairwise nucleotide alignments

   C++ 1

2. G2Lab/scPrivacy G2Lab/scPrivacy Public

   Analysis and method implementation for exploring private information leakage from single-cell RNA-seq count matrices

   Python 4 2

3. G2Lab/pQuant G2Lab/pQuant Public

   Jupyter Notebook 3

4. template_switching template_switching Public

   Analysis that statistically assesses short template switch mutations in human genomes (Walker et al., PLOS Genetics 2021)

   Python 1

5. W-L/ProblematicSites_SARS-CoV2 W-L/ProblematicSites_SARS-CoV2 Public

   Python 51 14

6. NicolaDM/phastSim NicolaDM/phastSim Public

   fast sequence evolution simulation for SARS-CoV-2 and similar

   Python 24 7