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R-CMD-check #33 R-CMD-check #33

on:
push:
branches:
- master
pull_request:
branches:
- master
name: R-CMD-check
jobs:
R-CMD-check:
runs-on: ${{ matrix.config.os }}
name: ${{ matrix.config.os }} (${{ matrix.config.r }})
strategy:
fail-fast: false
matrix:
config:
- { os: windows-latest, r: 'release', rtools: 35}
- { os: windows-latest, r: 'devel', rtools: 35}
- { os: macOS-latest, r: 'release'}
- { os: macOS-latest, r: 'devel'}
- { os: ubuntu-16.04, r: 'release', cran: "https://demo.rstudiopm.com/all/__linux__/xenial/latest"}
- { os: ubuntu-18.04, r: 'release', cran: "https://demo.rstudiopm.com/all/__linux__/bionic/latest"}
env:
R_REMOTES_NO_ERRORS_FROM_WARNINGS: true
_R_CHECK_FORCE_SUGGESTS_: false
CRAN: ${{ matrix.config.cran }}
steps:
- uses: actions/checkout@v1
- uses: r-lib/actions/setup-r@master
with:
r-version: ${{ matrix.config.r }}
rtools-version: ${{ matrix.config.rtools }}
- uses: r-lib/actions/setup-pandoc@master
- name: Print Session Info
run: Rscript -e "sessionInfo()"
- name: Query dependencies
run: Rscript -e "install.packages('remotes')" -e "saveRDS(remotes::dev_package_deps(dependencies = TRUE), 'depends.Rds', version = 2)"
- name: Cache R packages
if: runner.os != 'Windows'
uses: actions/cache@v1
with:
path: ${{ env.R_LIBS_USER }}
key: ${{ runner.os }}-r-${{ matrix.config.r }}-${{ hashFiles('depends.Rds') }}
restore-keys: ${{ runner.os }}-r-${{ matrix.config.r }}-
- name: Install system dependencies
if: runner.os == 'Linux'
env:
RHUB_PLATFORM: linux-x86_64-ubuntu-gcc
run: |
Rscript -e "remotes::install_github('r-hub/sysreqs')"
sysreqs=$(Rscript -e "cat(sysreqs::sysreq_commands('DESCRIPTION'))")
sudo -s eval "$sysreqs"
- name: Install dependencies
run: Rscript -e "library(remotes)" -e "update(readRDS('depends.Rds'))" -e "remotes::install_cran('rcmdcheck')"
- name: Install MatrixGenerics from GitHub
run: Rscript -e "remotes::install_github('BioConductor/MatrixGenerics')"
- name: Check
run: Rscript -e "rcmdcheck::rcmdcheck(args = '--no-manual', error_on = 'warning', check_dir = 'check')"
- name: Upload check results
if: failure()
uses: actions/upload-artifact@master
with:
name: ${{ runner.os }}-r${{ matrix.config.r }}-results
path: check
- name: Test coverage
if: matrix.config.os == 'macOS-latest' && matrix.config.r == 'release'
run: Rscript -e 'install.packages("covr")' -e 'covr::codecov(type = "all", token = "${{secrets.CODECOV_TOKEN}}")'