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query.fastq.0 query.fastq.1 query.fastq.2 query.fastq.3 query.fastq.4 query.fastq.5 query.fastq.6 query.fastq.7 query.fastq.8 query.fastq.9 : fastq_reduce query.fastq
LOCAL perl fastq_reduce query.fastq 100
ref.fastq.bwt ref.fastq.pac ref.fastq.amb ref.fastq.ann ref.fastq.sa : bwa ref.fastq
LOCAL ./bwa index ref.fastq
query.fastq.0.sam query.fastq.0.err : bwa ref.fastq ref.fastq.bwt ref.fastq.pac ref.fastq.amb ref.fastq.ann ref.fastq.sa query.fastq.0
./bwa mem -v 0 ref.fastq query.fastq.0 > query.fastq.0.sam 2> query.fastq.0.err
query.fastq.1.sam query.fastq.1.err : bwa ref.fastq ref.fastq.bwt ref.fastq.pac ref.fastq.amb ref.fastq.ann ref.fastq.sa query.fastq.1
./bwa mem -v 0 ref.fastq query.fastq.1 > query.fastq.1.sam 2> query.fastq.1.err
query.fastq.2.sam query.fastq.2.err : bwa ref.fastq ref.fastq.bwt ref.fastq.pac ref.fastq.amb ref.fastq.ann ref.fastq.sa query.fastq.2
./bwa mem -v 0 ref.fastq query.fastq.2 > query.fastq.2.sam 2> query.fastq.2.err
query.fastq.3.sam query.fastq.3.err : bwa ref.fastq ref.fastq.bwt ref.fastq.pac ref.fastq.amb ref.fastq.ann ref.fastq.sa query.fastq.3
./bwa mem -v 0 ref.fastq query.fastq.3 > query.fastq.3.sam 2> query.fastq.3.err
query.fastq.4.sam query.fastq.4.err : bwa ref.fastq ref.fastq.bwt ref.fastq.pac ref.fastq.amb ref.fastq.ann ref.fastq.sa query.fastq.4
./bwa mem -v 0 ref.fastq query.fastq.4 > query.fastq.4.sam 2> query.fastq.4.err
query.fastq.5.sam query.fastq.5.err : bwa ref.fastq ref.fastq.bwt ref.fastq.pac ref.fastq.amb ref.fastq.ann ref.fastq.sa query.fastq.5
./bwa mem -v 0 ref.fastq query.fastq.5 > query.fastq.5.sam 2> query.fastq.5.err
query.fastq.6.sam query.fastq.6.err : bwa ref.fastq ref.fastq.bwt ref.fastq.pac ref.fastq.amb ref.fastq.ann ref.fastq.sa query.fastq.6
./bwa mem -v 0 ref.fastq query.fastq.6 > query.fastq.6.sam 2> query.fastq.6.err
query.fastq.7.sam query.fastq.7.err : bwa ref.fastq ref.fastq.bwt ref.fastq.pac ref.fastq.amb ref.fastq.ann ref.fastq.sa query.fastq.7
./bwa mem -v 0 ref.fastq query.fastq.7 > query.fastq.7.sam 2> query.fastq.7.err
query.fastq.8.sam query.fastq.8.err : bwa ref.fastq ref.fastq.bwt ref.fastq.pac ref.fastq.amb ref.fastq.ann ref.fastq.sa query.fastq.8
./bwa mem -v 0 ref.fastq query.fastq.8 > query.fastq.8.sam 2> query.fastq.8.err
query.fastq.9.sam query.fastq.9.err : bwa ref.fastq ref.fastq.bwt ref.fastq.pac ref.fastq.amb ref.fastq.ann ref.fastq.sa query.fastq.9
./bwa mem -v 0 ref.fastq query.fastq.9 > query.fastq.9.sam 2> query.fastq.9.err
query.sam : cat_bwa query.fastq.0.sam query.fastq.1.sam query.fastq.2.sam query.fastq.3.sam query.fastq.4.sam query.fastq.5.sam query.fastq.6.sam query.fastq.7.sam query.fastq.8.sam query.fastq.9.sam
LOCAL perl cat_bwa query.sam query.fastq.*.sam
query.err : query.fastq.0.err query.fastq.1.err query.fastq.2.err query.fastq.3.err query.fastq.4.err query.fastq.5.err query.fastq.6.err query.fastq.7.err query.fastq.8.err query.fastq.9.err
LOCAL cat query.fastq.*.err > query.err