Calculate a sort of 'information content' for data in bed format, by seeing how many unique positions are recovered as a function of the total read depth.
R Python
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LICENCE
README.md
batch_plot.r
bed-metric.py
calc_quality_metric.r
plot_quality_metric_overlay.r

README.md

bed-metric

Calculate a sort of 'information content' for data in bed format, by seeing how many unique positions are recovered as a function of the total read depth.

========== Usage: python bed-metric.py FILE.gz (--plot)

Optional argument --plot automatically generates a pdf of the unique positions as a function of total positions, with 'predicted asymptotic' value if necessary.