corese-stack · remiceres · Jun 10, 2025 · May 14, 2025 · May 15, 2025 · May 16, 2025
diff --git a/build.gradle.kts b/build.gradle.kts
@@ -12,7 +12,7 @@ plugins {
 
     // Tooling plugins
     `jacoco`                                                    // For code coverage reports
-    id("org.gradlex.extra-java-module-info") version "1.9"      // Module metadata for JARs without module info
+    id("org.gradlex.extra-java-module-info") version "1.11"      // Module metadata for JARs without module info
     id("com.gradleup.shadow") version "8.3.5"                   // Bundles dependencies into a single JAR
     id("org.sonarqube") version "6.0.1.5171"                    // SonarQube integration
     id("com.intershop.gradle.javacc") version "5.0.0"           // JavaCC plugin for parsing JavaCC files
@@ -29,6 +29,7 @@ sonar {
         property("sonar.login", System.getenv("SONAR_TOKEN"))
         property("sonar.coverage.jacoco.xmlReportPaths", "build/reports/jacoco/test/jacocoTestReport.xml")
         property("sonar.sourceEncoding", "UTF-8")
+        property("sonar.projectDate", currentDate)
     }
 }
 
@@ -46,7 +47,7 @@ javacc {
 sourceSets {
     main {
         java {
-            srcDir("$buildDir/generated-src/javacc")
+            srcDir(layout.buildDirectory.dir("generated-src/javacc"))
         }
     }
 }
@@ -87,7 +88,9 @@ object Meta {
 java {
     withJavadocJar()                             // Include Javadoc JAR in publications
     withSourcesJar()                             // Include sources JAR in publications
-    sourceCompatibility = JavaVersion.VERSION_11 // Configure minimum Java version
+    toolchain {
+        languageVersion.set(JavaLanguageVersion.of(21))
+    }
 }
 
 /////////////////////////
@@ -102,7 +105,7 @@ repositories {
 
 // Define dependencies
 dependencies {
-    val jersey_version = "3.0.4"
+    val jersey_version = "3.1.3"
     val semargl_version = "0.7.1"
 
     // === Public API (Corese-Core users must see these classes) ===
@@ -321,6 +324,10 @@ tasks.jacocoTestReport {
 // This ensures that test coverage reports are always generated after tests.
 tasks.test {
     useJUnitPlatform()
+    testLogging {
+        events("passed", "skipped", "failed")
+    }
+    systemProperty("java.util.logging.config.file", "src/test/resources/logging.properties")
     finalizedBy(tasks.jacocoTestReport)
 }
 

diff --git a/src/main/java/fr/inria/corese/core/Graph.java b/src/main/java/fr/inria/corese/core/Graph.java
@@ -2626,7 +2626,7 @@ public Hashtable<String, Node> getTripleNodeMap() {
     }
 
     /**
-     * resource & blank TODO: a node may have been deleted (by a delete triple)
+     * resource &amp; blank TODO: a node may have been deleted (by a delete triple)
      * but still be in the table
      */
     public Iterable<Node> getRBNodes() {

diff --git a/src/main/java/fr/inria/corese/core/api/DataBrokerConstruct.java b/src/main/java/fr/inria/corese/core/api/DataBrokerConstruct.java
@@ -58,7 +58,7 @@ default boolean exist(Node property, Node subject, Node object) {
     /**
      * Edge may be an rdf star triple, asserted or nested
      * RDF star triple design
-     * <<s p o>> q v   -> <<edge(s p o t)>> t q v
+     * &lt;&lt;s p o>> q v   -> &lt;&lt;edge(s p o t)>> t q v
      * s p o {| q v |} -> edge(s p o t)     t q v
      * g1 s p o t g2 s p o t
      * t is additional Node, similar to subject/object
@@ -77,8 +77,8 @@ default boolean exist(Node property, Node subject, Node object) {
      * where subject/object may be a reference node and/or edge may have reference
      * node
      * DataManager must process these subject/object/reference using the api above
-     * for example: find/insert/delete t q v where t = <<s p o>>
-     * Note that it can be recursive: t = <<<<s p o>> r u>>
+     * for example: find/insert/delete t q v where t = &lt;&lt;s p o>>
+     * Note that it can be recursive: t = &lt;&lt;&lt;&lt;s p o>> r u>>
      * .
      */
 

diff --git a/src/main/java/fr/inria/corese/core/compiler/eval/Custom.java b/src/main/java/fr/inria/corese/core/compiler/eval/Custom.java
@@ -16,7 +16,7 @@
 /**
  * SPARQL Java extension functions
  * cs:test()
- * prefix cs: <http://ns.inria.fr/sparql-custom/>
+ * prefix cs: &lt;http://ns.inria.fr/sparql-custom/>
  *
  * @author Olivier Corby, Wimmics INRIA I3S, 2015
  */

diff --git a/src/main/java/fr/inria/corese/core/compiler/eval/ProxyInterpreter.java b/src/main/java/fr/inria/corese/core/compiler/eval/ProxyInterpreter.java
@@ -18,7 +18,7 @@
 import org.slf4j.LoggerFactory;
 
 /**
- * Evaluator of operators & functions of filter language
+ * Evaluator of operators &amp; functions of filter language
  * implemented by fr.inria.corese.core.query.PluginImpl
  *
  * @author Olivier Corby, Edelweiss, INRIA 2010

diff --git a/src/main/java/fr/inria/corese/core/compiler/eval/QuerySolver.java b/src/main/java/fr/inria/corese/core/compiler/eval/QuerySolver.java
@@ -27,7 +27,7 @@
 
 /**
  * Evaluator of SPARQL query by KGRAM Ready to use Package with KGRAM and SPARQL
- * Parser & Transformer
+ * Parser &amp; Transformer
  *
  * @author Olivier Corby, Edelweiss, INRIA 2010
  */

diff --git a/src/main/java/fr/inria/corese/core/edge/EdgeImpl.java b/src/main/java/fr/inria/corese/core/edge/EdgeImpl.java
@@ -14,7 +14,7 @@
 /**
  * Graph Edge with n nodes (not only triple)
  * RDF star triple with reference node t
- * g <<s p o t>>
+ * g &lt;&lt;s p o t>>
  *
  * @author Olivier Corby, Edelweiss INRIA 2010
  */

diff --git a/src/main/java/fr/inria/corese/core/extension/Agent.java b/src/main/java/fr/inria/corese/core/extension/Agent.java
@@ -16,7 +16,7 @@
  * It has a singleton, hence each ag:fun() function call is performed on the same object
  * The singleton can be accessed in LDScript using xt:agent()
  * <p>
- * prefix ag: <function://fr.inria.corese.core.extension.Agent>
+ * prefix ag: &lt;function://fr.inria.corese.core.extension.Agent>
  * <p>
  * IDatatype ag:functionName(IDatatype arg)
  * <p>

diff --git a/src/main/java/fr/inria/corese/core/extension/Extension.java b/src/main/java/fr/inria/corese/core/extension/Extension.java
@@ -42,7 +42,7 @@
 
 /**
  * Generic Java Extension function public class
- * prefix fun: <function://fr.inria.corese.core.extension.Extension>
+ * prefix fun: &lt;function://fr.inria.corese.core.extension.Extension>
  * fun:test(xt:graph())
  * <p>
  * Provide access to query execution environment

diff --git a/src/main/java/fr/inria/corese/core/extension/Report.java b/src/main/java/fr/inria/corese/core/extension/Report.java
@@ -14,7 +14,7 @@
  * execution Service Report is the value of a variable ?_service_report_n where
  * n is the number of the service Variable ?_service_report_n is bound in the
  * environment Variable value is a LDScript JSON object, with dt:json datatype
- * prefix js: <function://fr.inria.corese.core.extension.Report>
+ * prefix js: &lt;function://fr.inria.corese.core.extension.Report>
  *
  * @report @header [@enum]
  * values (?akey ?aval) { unnest(js:report()) }

diff --git a/src/main/java/fr/inria/corese/core/extension/core/Core.java b/src/main/java/fr/inria/corese/core/extension/core/Core.java
@@ -128,7 +128,7 @@ public IDatatype maplist(IDatatype fun, IDatatype... ldt) {
 
     /**
      * This PluginImpl was created for executing a Method such as java:report()
-     * where java: = <function:// ...>
+     * where java: = &lt;function:// ...>
      * This PluginImpl contains Environment and Producer use case: JavaCompiler
      * external function
      */

diff --git a/src/main/java/fr/inria/corese/core/kgram/api/core/Node.java b/src/main/java/fr/inria/corese/core/kgram/api/core/Node.java
@@ -44,7 +44,6 @@ default PointerType pointerType() {
     /**
      * Query nodes have an index computed by KGRAM
      *
-     * @return
      */
     void setIndex(int n);
 

diff --git a/src/main/java/fr/inria/corese/core/kgram/core/Exp.java b/src/main/java/fr/inria/corese/core/kgram/core/Exp.java
@@ -1484,7 +1484,7 @@ boolean match(Node node, Filter f) {
     }
 
     /**
-     * this is FILTER with TEST ?x < ?y
+     * this is FILTER with TEST ?x &lt; ?y
      */
     public int oper() {
         return getFilter().getExp().oper();
@@ -1526,7 +1526,7 @@ public int indexNode(Node node) {
     }
 
     /**
-     * index of node in FILTER ?x < ?y
+     * index of node in FILTER ?x &lt; ?y
      */
     public int indexVar(Node node) {
         Expr ee = getFilter().getExp();

diff --git a/src/main/java/fr/inria/corese/core/kgram/core/Query.java b/src/main/java/fr/inria/corese/core/kgram/core/Query.java
@@ -1079,7 +1079,7 @@ public int nbFun() {
 
     /**
      * Check that select variables and expressions are compatible with group by
-     * & aggregates use case:
+     * &amp; aggregates use case:
      *
      * SELECT ?P (COUNT(?O) AS ?C) WHERE { ?S ?P ?O }
      *
@@ -1319,7 +1319,7 @@ public Node getNode(String name) {
      * get node with going in select sub query 
      * go into its own select because
      * order by may reuse a select variable use case: transformer find node for
-     * select & group by
+     * select &amp; group by
      */
     public Node getProperAndSubSelectNode(String name) {
         return getExtNode(name, true);

diff --git a/src/main/java/fr/inria/corese/core/kgram/core/QuerySorter.java b/src/main/java/fr/inria/corese/core/kgram/core/QuerySorter.java
@@ -387,7 +387,7 @@ void sortFilter(Exp exp, VString varList) {
     }
 
     /**
-     * Identify remarkable filter ?x < ?y ?x = ?y or ?x = cst or !bound() filter
+     * Identify remarkable filter ?x &lt; ?y ?x = ?y or ?x = cst or !bound() filter
      * is tagged
      */
     public List<Exp> findBindings(Exp exp) {

diff --git a/src/main/java/fr/inria/corese/core/kgram/filter/Checker.java b/src/main/java/fr/inria/corese/core/kgram/filter/Checker.java
@@ -11,12 +11,12 @@
 
 /**
  * Filter Exp Checker
- * 
+ *
  * Check presence of patterns that are always true or always false
  * Such as:
  * ?x != ?x
- * ?x > ?y && ?x < ?y
- * 
+ * ?x &gt; ?y &amp;&amp; ?x &lt; ?y
+ *
  * @author Olivier Corby, Edelweiss, INRIA 2010
  *
  */

diff --git a/src/main/java/fr/inria/corese/core/kgram/path/PathFinder.java b/src/main/java/fr/inria/corese/core/kgram/path/PathFinder.java
@@ -412,7 +412,7 @@ public void interrupt() {
     }
 
     /**
-     * init at creation time, no need to change. pmax comes from pathLength() <=
+     * init at creation time, no need to change. pmax comes from pathLength() &lt;=
      * pmax
      */
     public void init(Regex exp, Object smode, int pmin, int pmax) {

diff --git a/src/main/java/fr/inria/corese/core/kgram/sorter/impl/qpv1/BasicPatternGenerator.java b/src/main/java/fr/inria/corese/core/kgram/sorter/impl/qpv1/BasicPatternGenerator.java
@@ -23,7 +23,7 @@ public class BasicPatternGenerator {
     private final static int TRIPLE_LEN = 3, PATTERN_LEN = 8;
 
     /**
-     * Generate the default basic pattern orders using Np < Ns < No
+     * Generate the default basic pattern orders using Np &lt; Ns &lt; No
      *
      * @return
      */

diff --git a/src/main/java/fr/inria/corese/core/kgram/sorter/impl/qpv1/DepthFirstBestSearch.java b/src/main/java/fr/inria/corese/core/kgram/sorter/impl/qpv1/DepthFirstBestSearch.java
@@ -11,7 +11,7 @@
 import static fr.inria.corese.core.kgram.api.core.ExpType.*;
 
 /**
- * An implementation for sorting the triple pattern depth-first & best greedy
+ * An implementation for sorting the triple pattern depth-first &amp; best greedy
  * algorithm
  *
  * 1 start with the one with least cost, if there are more than 2 with same cost
@@ -21,7 +21,7 @@
  *
  * 3 recursively search until all nodes have been visited
  *
- * 4 every time one node is added to visited, check FILTER & VALUES
+ * 4 every time one node is added to visited, check FILTER &amp; VALUES
  * ++ 4.1 now also check BIND 20Jan2015
  *
  * @author Fuqi Song, Wimmics Inria I3S

diff --git a/src/main/java/fr/inria/corese/core/load/AddTripleHelper.java b/src/main/java/fr/inria/corese/core/load/AddTripleHelper.java
@@ -202,7 +202,6 @@ String blankNode() {
     /**
      * Get the default graph source according to the status of graph and source
      *
-     * @param graph  Graph that will be filled in
      * @param source The particular name to add nodes to
      *
      * @return

diff --git a/src/main/java/fr/inria/corese/core/logic/Distance.java b/src/main/java/fr/inria/corese/core/logic/Distance.java
@@ -12,13 +12,13 @@
 import fr.inria.corese.core.kgram.api.core.Node;
 
 /**
- * Semantic distance & similarity with Corese 2.4 Algorithm Extended to property
+ * Semantic distance &amp; similarity with Corese 2.4 Algorithm Extended to property
  * hierarchy distance: kg:pSimilarity
  *
  * PRAGMA: need a graph with Node set/get Depth need a root class, default is
  * rdfs:Resource or owl:Thing
  *
- * If a class is not subClassOf root, depth simulate to 1 Exploit owl:sameAs &
+ * If a class is not subClassOf root, depth simulate to 1 Exploit owl:sameAs &amp;
  * owl:equivalentClass/Property
  *
  * Generalized to property hierarchy with a step of 1/8^n instead of 1/2^n steps

diff --git a/src/main/java/fr/inria/corese/core/logic/Entailment.java b/src/main/java/fr/inria/corese/core/logic/Entailment.java
@@ -23,7 +23,7 @@
  * rdfs:domain rdfs:range rdfs:subPropertyOf rdfs:subClassOf
  * owl:SymmetricProperty owl:inverseOf
  *
- * subPropertyOf & subClassOf are not transitive in the graph but their
+ * subPropertyOf &amp; subClassOf are not transitive in the graph but their
  * instances are typed according to transitivity
  *
  * @author Olivier Corby, Edelweiss INRIA 2010

diff --git a/src/main/java/fr/inria/corese/core/next/impl/common/literal/XSD.java b/src/main/java/fr/inria/corese/core/next/impl/common/literal/XSD.java
@@ -58,7 +58,7 @@ public enum XSD implements CoreDatatype {
     POSITIVE_INTEGER(fr.inria.corese.core.next.impl.common.vocabulary.XSD.xsdPositiveInteger.getIRI()),
 
     /**
-     * Integer numbers <0
+     * Integer numbers &lt;0
      */
     NEGATIVE_INTEGER(fr.inria.corese.core.next.impl.common.vocabulary.XSD.xsdNegativeInteger.getIRI()),
 
@@ -178,7 +178,7 @@ public enum XSD implements CoreDatatype {
     TOKEN(fr.inria.corese.core.next.impl.common.vocabulary.XSD.xsdToken.getIRI()),
 
     /**
-     * Language tags per <a href="https://www.rfc-editor.org/rfc/rfc5646">rfc5646</>
+     * Language tags per &lt;a href="https://www.rfc-editor.org/rfc/rfc5646">rfc5646&lt;/>
      */
     LANGUAGE(fr.inria.corese.core.next.impl.common.vocabulary.XSD.xsdLanguage.getIRI()),
 

diff --git a/src/main/java/fr/inria/corese/core/print/TripleFormat.java b/src/main/java/fr/inria/corese/core/print/TripleFormat.java
@@ -11,7 +11,7 @@
 import java.util.List;
 
 /**
- * Turtle & Trig Format
+ * Turtle &amp; Trig Format
  * 
  * Olivier Corby, Wimmics INRIA 2013
  */

diff --git a/src/main/java/fr/inria/corese/core/print/XSLTQuery.java b/src/main/java/fr/inria/corese/core/print/XSLTQuery.java
@@ -35,9 +35,9 @@
  *   extension-element-prefixes="server"
  *   
  * Exec query using this code:
- *   <xsl:variable name='res'  select='server:sparql($engine, $query)' />
+ *   &lt;xsl:variable name='res'  select='server:sparql($engine, $query)' />
  * 
- * Olivier Corby & Fabien Gandon, Edelweiss INRIA 2011
+ * Olivier Corby &amp; Fabien Gandon, Edelweiss INRIA 2011
  * 
  */
 public class XSLTQuery {

diff --git a/src/main/java/fr/inria/corese/core/print/rdfc10/CanonicalizationState.java b/src/main/java/fr/inria/corese/core/print/rdfc10/CanonicalizationState.java
@@ -71,7 +71,6 @@ public void associateHashWithBlankNode(String hash, String blankNodeId) {
      * Retrieves blanks nodes associated with a specific hash value.
      * 
      * @param hash The hash value.
-     * @return A list of blank nodes associated with the hash value.
      */
     public void removeHash(String hash) {
         this.hashToBlankNode.remove(hash);

diff --git a/src/main/java/fr/inria/corese/core/query/PluginImpl.java b/src/main/java/fr/inria/corese/core/query/PluginImpl.java
@@ -706,7 +706,7 @@ public Graph getGraph() {
     /**
      * rdf star
      * triple(s, p, o)
-     * filter bind <<s p o>>
+     * filter bind &lt;&lt;s p o&gt;&gt;
      */
     // @todo DataManager
     @Override

diff --git a/src/main/java/fr/inria/corese/core/rule/Rule.java b/src/main/java/fr/inria/corese/core/rule/Rule.java
@@ -213,8 +213,8 @@ public boolean isPseudoTransitive() {
     }
 
     /**
-     * this = x type c2        :- x type c1        & c1 subclassof c2
-     * r    = c1 subclassof c3 :- c1 subclassof c2 & c2 subclassof c3
+     * this = x type c2        :- x type c1        &amp; c1 subclassof c2
+     * r    = c1 subclassof c3 :- c1 subclassof c2 &amp; c2 subclassof c3
      */
     public boolean isPseudoTransitive(Rule r) {
         if (isPseudoTransitive() && r.isTransitive()) {

diff --git a/src/main/java/fr/inria/corese/core/rule/RuleEngine.java b/src/main/java/fr/inria/corese/core/rule/RuleEngine.java
@@ -55,7 +55,7 @@
  * Focus on new triples using specific Graph Index sorted by timestamp
  * Eval transitive rule at saturation using specific Java code
  * Eval pseudo transitive rule just after it's transitive rule
- * (cf rdf:type & rdfs:subClassOf)
+ * (cf rdf:type &amp; rdfs:subClassOf)
  * <p>
  * OWL_RL profile load specific rule base
  *

diff --git a/src/main/java/fr/inria/corese/core/sparql/api/IDatatype.java b/src/main/java/fr/inria/corese/core/sparql/api/IDatatype.java
@@ -322,7 +322,7 @@ default boolean isTripleWithEdge() {
      *
      * @param dt another datatype
      * @return 0 if they are equals, an int > 0 if the datatype is greater than
-     * dt2, an int < 0 if the datatype is lesser
+     * dt2, an int &lt; 0 if the datatype is lesser
      */
     int compareTo(IDatatype dt);
 
@@ -438,13 +438,13 @@ default String pretty() {
 
     /**
      * @param iod
-     * @return iod.getValue() < this.getValue() @throws Core seDatatypeException
+     * @return iod.getValue() &lt; this.getValue() @throws Core seDatatypeException
      */
     boolean less(IDatatype iod) throws CoreseDatatypeException;
 
     /**
      * @param iod
-     * @return iod.getValue() <= to this.getValue() @throws CoreseDa
+     * @return iod.getValue() &lt;= to this.getValue() @throws CoreseDa
      * tatypeException
      */
     boolean lessOrEqual(IDatatype iod)
-Original file line number
+Diff line change
@@ Expand Up / @@ -44,7 +44,6 @@ default PointerType pointerType() { @@
         /**
          * Query nodes have an index computed by KGRAM
          *
-         * @return
          */
         void setIndex(int n);
@@ Expand Down @@