The Grackle Project
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Multiaccess_box_design_files added license and citation May 28, 2018
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.gitignore added top 3 lines Dec 8, 2017
GrackleProjectTimeline.png added 5 year timeline Sep 14, 2018
MyLibrary.bib added ref Aug 22, 2018
README.md
g_causal.Rmd Update to Experiment 2 procedural phrasing Sep 17, 2018
g_causalExp1.png PREREGISTRATION for how flexibility relates to causal cognition Nov 6, 2017
g_causalExp2.png
g_expansion.Rmd updated planned sample Sep 16, 2018
g_expansionFig1.png PREREGISTRATION for how flexibility relates to range expansion Jan 22, 2018
g_exploration.Rmd revised experimenter as a random effect Aug 31, 2018
g_exploreFig1.png PREREGISTRATION for how flexibiilty relates to exploratory behaviors Nov 6, 2017
g_feathermites.Rmd Pre-data collection: added a co-author Jan 22, 2018
g_flexforaging.Rmd updated planned sample Sep 16, 2018
g_flexgenes.Rmd updated planned sample Sep 16, 2018
g_flexmanip.Rmd
g_flexmanipFig1.png revised Fig1 Jun 12, 2018
g_inhibition.Rmd added Flexibility 4 Sep 7, 2018
g_inhibitionFig1.png updated figure Sep 10, 2018
g_withinpop.Rmd updated planned sample Sep 16, 2018

README.md

The Grackle Project

Many experiments will be conducted over the next several years and I post the reproducible manuscripts (.Rmd files including text and code) here. Each investigation (a group of hypotheses) has one .Rmd file that goes through different versions:

  • PREREGISTRATION: I list the hypotheses, predictions, methods, and analysis plan BEFORE any data are collected.
    Note: the preregistration might already undergo peer review by submitting it to PCI Ecology or as a Registered Report to a journal

  • PREPRINT: the version I submit for peer review.
    Note: if the preregistration has already been peer reviewed, then the preprint is resubmitted to the original peer reviewers for the final review

  • PUBLISHED: the final version that is peer-reviewed.

The version is noted in the Commit comment, and the different versions can be seen in the history of the file of interest. Following the version history of ONE file allows one to track how this piece of work has changed through the entire investigation.

5-year Project Overview

Individuals will experience the experiments listed in each column (i.e., individuals in the left column (Years 1 and 2) will experience numbers 1-9, and individuals in the right column (Years 3-5) will experience A-D, plus numbers 5-9).

Table of Contents

Preregistrations

  1. Logan CJ, Rowney C, Bergeron L, Seitz B, Blaisdell A, Johnson-Ulrich Z, McCune K. 2017. Is behavioral flexibility manipulatable and, if so, does it improve flexibility and problem solving in a new context?. GitHub.

  2. Logan CJ, Johnson-Ulrich Z, Rowney C, Bergeron L, McCune K. 2017. Does manipulating behavioral flexibility affect exploration and neophilia? GitHub.

  3. Logan CJ, Johnson-Ulrich Z, Bergeron L, Rowney C, Seitz B, Blaisdell A, McCune K, Wascher CAF. 2017. Are the more flexible individuals also better at inhibition? GitHub.

  4. Blaisdell A, Johnson-Ulrich Z, Bergeron L, Rowney C, Seitz B, McCune K, Logan CJ. 2017. Do the more flexible individuals rely more on causal cognition? Observation versus intervention in casual inference in great-tailed grackles. Note: this preregistration is also at the Open Science Framework because it occurred before the GitHub repository was created. I posted the .Rmd file here at GitHub to implement version tracking. GitHub.

  5. Logan CJ, Bergeron L, Rowney C, Johnson-Ulrich Z. 2017, McCune K. Does behavioral flexibility positively correlate with the number of food types eaten and foraging techniques used in a rapidly expanding species? GitHub.

  6. Logan CJ, Johnson-Ulrich Z, Rowney C, Bergeron L, McCune K, Trumble B, Blackwell A, Escalante A, Pacheco M. 2018. What are the costs and constraints of behavioral flexibility in great-tailed grackles? GitHub.

  7. Logan CJ, Johnson-Ulrich Z, Rowney C, Bergeron L, McCune K, Trumble B, Blackwell A, Escalante A, Pacheco M. 2018. How and why does behavioral flexibility vary across the range of a rapidly expanding species? GitHub.

  8. Taylor JE, Johnson-Ulrich Z, Bergeron, Rowney C, Logan CJ. 2017. Feather mite variation across the range of a rapidly expanding species, the great-tailed grackle. GitHub.

  9. Logan CJ, Rowney C, Johnson-Ulrich Z, Bergeron L, McCune K, Blackwell A, Lukas D. 2018. The genetics of behavioral flexibility across the range of a rapidly expanding species. GitHub.

Note: full references are listed in MyLibrary.bib

Design files

License

CC-BY-SA 4.0: share alike and attribute the original source using the citations above

DOI