diff --git a/lineage_constellations/AY.100_constellation.json b/lineage_constellations/AY.100_constellation.json index d123442b..96aace7f 100644 --- a/lineage_constellations/AY.100_constellation.json +++ b/lineage_constellations/AY.100_constellation.json @@ -40,7 +40,9 @@ "n:R203M", "n:G215C", "n:D377Y", - "nuc:G29742T" + "nuc:G29742T", + "nuc:T8782C", + "orf8:L84S" ], "rules": { "min_alt": "27", diff --git a/lineage_constellations/AY.101_constellation.json b/lineage_constellations/AY.101_constellation.json index d1f85d18..350bf229 100644 --- a/lineage_constellations/AY.101_constellation.json +++ b/lineage_constellations/AY.101_constellation.json @@ -41,7 +41,9 @@ "n:R203M", "n:G215C", "n:D377Y", - "nuc:G29742T" + "nuc:G29742T", + "nuc:T8782C", + "orf8:L84S" ], "rules": { "min_alt": "29", diff --git a/lineage_constellations/AY.104_constellation.json b/lineage_constellations/AY.104_constellation.json index 23de6876..cfdd34dd 100644 --- a/lineage_constellations/AY.104_constellation.json +++ b/lineage_constellations/AY.104_constellation.json @@ -39,7 +39,9 @@ "n:R203M", "n:G215C", "n:D377Y", - "nuc:G29742T" + "nuc:G29742T", + "nuc:T8782C", + "orf8:L84S" ], "rules": { "min_alt": "27", diff --git a/lineage_constellations/AY.105_constellation.json b/lineage_constellations/AY.105_constellation.json index 19f4ded5..013e832f 100644 --- a/lineage_constellations/AY.105_constellation.json +++ b/lineage_constellations/AY.105_constellation.json @@ -38,7 +38,9 @@ "n:R203M", "n:G215C", "n:D377Y", - "nuc:G29742T" + "nuc:G29742T", + "nuc:T8782C", + "orf8:L84S" ], "rules": { "min_alt": "26", diff --git a/lineage_constellations/AY.107_constellation.json b/lineage_constellations/AY.107_constellation.json index 30205b02..33f5d9f1 100644 --- a/lineage_constellations/AY.107_constellation.json +++ b/lineage_constellations/AY.107_constellation.json @@ -38,7 +38,9 @@ "n:R203M", "n:G215C", "n:D377Y", - "nuc:G29742T" + "nuc:G29742T", + "nuc:T8782C", + "orf8:L84S" ], "rules": { "min_alt": "26", diff --git a/lineage_constellations/AY.108_constellation.json b/lineage_constellations/AY.108_constellation.json index bd1154e0..98884c62 100644 --- a/lineage_constellations/AY.108_constellation.json +++ b/lineage_constellations/AY.108_constellation.json @@ -41,7 +41,9 @@ "n:R203M", "n:G215C", "n:D377Y", - "nuc:G29742T" + "nuc:G29742T", + "nuc:T8782C", + "orf8:L84S" ], "rules": { "min_alt": "29", diff --git a/lineage_constellations/AY.109_constellation.json b/lineage_constellations/AY.109_constellation.json index 829d0bf6..0123a143 100644 --- a/lineage_constellations/AY.109_constellation.json +++ b/lineage_constellations/AY.109_constellation.json @@ -41,7 +41,9 @@ "n:R203M", "n:G215C", "n:D377Y", - "nuc:G29742T" + "nuc:G29742T", + "nuc:T8782C", + "orf8:L84S" ], "rules": { "min_alt": "29", diff --git a/lineage_constellations/AY.10_constellation.json b/lineage_constellations/AY.10_constellation.json index 742702f7..e508374d 100644 --- a/lineage_constellations/AY.10_constellation.json +++ b/lineage_constellations/AY.10_constellation.json @@ -43,7 +43,9 @@ "orf8:D119N", "n:R203M", "n:D377Y", - "nuc:G29742T" + "nuc:G29742T", + "nuc:T8782C", + "orf8:L84S" ], "rules": { "min_alt": "30", diff --git a/lineage_constellations/AY.110_constellation.json b/lineage_constellations/AY.110_constellation.json index 0b9d8ffd..b2275aa9 100644 --- a/lineage_constellations/AY.110_constellation.json +++ b/lineage_constellations/AY.110_constellation.json @@ -37,7 +37,9 @@ "n:R203M", "n:G215C", "n:D377Y", - "nuc:G29742T" + "nuc:G29742T", + "nuc:T8782C", + "orf8:L84S" ], "rules": { "min_alt": "25", diff --git a/lineage_constellations/AY.111_constellation.json b/lineage_constellations/AY.111_constellation.json index 67230b4b..9e50040d 100644 --- a/lineage_constellations/AY.111_constellation.json +++ b/lineage_constellations/AY.111_constellation.json @@ -37,7 +37,9 @@ "n:R203M", "n:G215C", "n:D377Y", - "nuc:G29742T" + "nuc:G29742T", + "nuc:T8782C", + "orf8:L84S" ], "rules": { "min_alt": "25", diff --git a/lineage_constellations/AY.112_constellation.json b/lineage_constellations/AY.112_constellation.json index b6d7639b..afc48655 100644 --- a/lineage_constellations/AY.112_constellation.json +++ b/lineage_constellations/AY.112_constellation.json @@ -39,7 +39,9 @@ "n:G215C", "n:D377Y", "nuc:G29422T", - "nuc:G29742T" + "nuc:G29742T", + "nuc:T8782C", + "orf8:L84S" ], "rules": { "min_alt": "26", diff --git a/lineage_constellations/AY.113_constellation.json b/lineage_constellations/AY.113_constellation.json index 7bd341a3..87b8629b 100644 --- a/lineage_constellations/AY.113_constellation.json +++ b/lineage_constellations/AY.113_constellation.json @@ -38,7 +38,9 @@ "n:R203M", "n:G215C", "n:D377Y", - "nuc:G29742T" + "nuc:G29742T", + "nuc:T8782C", + "orf8:L84S" ], "rules": { "min_alt": "26", diff --git a/lineage_constellations/AY.114_constellation.json b/lineage_constellations/AY.114_constellation.json index 3b82dcd0..acda0885 100644 --- a/lineage_constellations/AY.114_constellation.json +++ b/lineage_constellations/AY.114_constellation.json @@ -38,7 +38,9 @@ "n:R203M", "n:G215C", "n:D377Y", - "nuc:G29742T" + "nuc:G29742T", + "nuc:T8782C", + "orf8:L84S" ], "rules": { "min_alt": "26", diff --git a/lineage_constellations/AY.115_constellation.json b/lineage_constellations/AY.115_constellation.json index 76074b7f..cfca71ee 100644 --- a/lineage_constellations/AY.115_constellation.json +++ b/lineage_constellations/AY.115_constellation.json @@ -37,7 +37,9 @@ "n:R203M", "n:G215C", "n:D377Y", - "nuc:G29742T" + "nuc:G29742T", + "nuc:T8782C", + "orf8:L84S" ], "rules": { "min_alt": "23", diff --git a/lineage_constellations/AY.116.1_constellation.json b/lineage_constellations/AY.116.1_constellation.json index b0db04ab..2453e95a 100644 --- a/lineage_constellations/AY.116.1_constellation.json +++ b/lineage_constellations/AY.116.1_constellation.json @@ -40,7 +40,9 @@ "n:R203M", "n:G215C", "n:D377Y", - "nuc:G29742T" + "nuc:G29742T", + "nuc:T8782C", + "orf8:L84S" ], "rules": { "min_alt": "28", diff --git a/lineage_constellations/AY.116_constellation.json b/lineage_constellations/AY.116_constellation.json index 1b48b5de..2799595b 100644 --- a/lineage_constellations/AY.116_constellation.json +++ b/lineage_constellations/AY.116_constellation.json @@ -37,7 +37,9 @@ "n:R203M", "n:G215C", "n:D377Y", - "nuc:G29742T" + "nuc:G29742T", + "nuc:T8782C", + "orf8:L84S" ], "rules": { "min_alt": "25", diff --git a/lineage_constellations/AY.117_constellation.json b/lineage_constellations/AY.117_constellation.json index a051c1f9..91b037a8 100644 --- a/lineage_constellations/AY.117_constellation.json +++ b/lineage_constellations/AY.117_constellation.json @@ -38,7 +38,9 @@ "n:R203M", "n:G215C", "n:D377Y", - "nuc:G29742T" + "nuc:G29742T", + "nuc:T8782C", + "orf8:L84S" ], "rules": { "min_alt": "26", diff --git a/lineage_constellations/AY.118_constellation.json b/lineage_constellations/AY.118_constellation.json index 6454be4d..9e7d3940 100644 --- a/lineage_constellations/AY.118_constellation.json +++ b/lineage_constellations/AY.118_constellation.json @@ -37,7 +37,9 @@ "n:R203M", "n:G215C", "n:D377Y", - "nuc:G29742T" + "nuc:G29742T", + "nuc:T8782C", + "orf8:L84S" ], "rules": { "min_alt": "25", diff --git a/lineage_constellations/AY.119_constellation.json b/lineage_constellations/AY.119_constellation.json index 0eceb506..1f5260f1 100644 --- a/lineage_constellations/AY.119_constellation.json +++ b/lineage_constellations/AY.119_constellation.json @@ -37,7 +37,9 @@ "n:R203M", "n:G215C", "n:D377Y", - "nuc:G29742T" + "nuc:G29742T", + "nuc:T8782C", + "orf8:L84S" ], "rules": { "min_alt": "25", diff --git a/lineage_constellations/AY.11_constellation.json b/lineage_constellations/AY.11_constellation.json index 2608c4fe..a97471af 100644 --- a/lineage_constellations/AY.11_constellation.json +++ b/lineage_constellations/AY.11_constellation.json @@ -36,7 +36,9 @@ "n:R203M", "n:D377Y", "nuc:C29509T", - "nuc:G29742T" + "nuc:G29742T", + "nuc:T8782C", + "orf8:L84S" ], "rules": { "min_alt": "23", diff --git a/lineage_constellations/AY.120.1_constellation.json b/lineage_constellations/AY.120.1_constellation.json index 77edee55..882fca37 100644 --- a/lineage_constellations/AY.120.1_constellation.json +++ b/lineage_constellations/AY.120.1_constellation.json @@ -39,7 +39,9 @@ "n:R203M", "n:G215C", "n:D377Y", - "nuc:G29742T" + "nuc:G29742T", + "nuc:T8782C", + "orf8:L84S" ], "rules": { "min_alt": "27", diff --git a/lineage_constellations/AY.120.2.1_constellation.json b/lineage_constellations/AY.120.2.1_constellation.json index 743d7f61..9463a4ff 100644 --- a/lineage_constellations/AY.120.2.1_constellation.json +++ b/lineage_constellations/AY.120.2.1_constellation.json @@ -43,7 +43,9 @@ "n:R203M", "n:G215C", "n:D377Y", - "nuc:G29742T" + "nuc:G29742T", + "nuc:T8782C", + "orf8:L84S" ], "rules": { "min_alt": "31", diff --git a/lineage_constellations/AY.120.2_constellation.json b/lineage_constellations/AY.120.2_constellation.json index 0b336b14..83c3a752 100644 --- a/lineage_constellations/AY.120.2_constellation.json +++ b/lineage_constellations/AY.120.2_constellation.json @@ -40,7 +40,9 @@ "n:R203M", "n:G215C", "n:D377Y", - "nuc:G29742T" + "nuc:G29742T", + "nuc:T8782C", + "orf8:L84S" ], "rules": { "min_alt": "28", diff --git a/lineage_constellations/AY.120_constellation.json b/lineage_constellations/AY.120_constellation.json index d65341b7..6505889f 100644 --- a/lineage_constellations/AY.120_constellation.json +++ b/lineage_constellations/AY.120_constellation.json @@ -37,7 +37,9 @@ "n:R203M", "n:G215C", "n:D377Y", - "nuc:G29742T" + "nuc:G29742T", + "nuc:T8782C", + "orf8:L84S" ], "rules": { "min_alt": "25", diff --git a/lineage_constellations/AY.13_constellation.json b/lineage_constellations/AY.13_constellation.json index 4bacd2ca..ec7dc7cc 100644 --- a/lineage_constellations/AY.13_constellation.json +++ b/lineage_constellations/AY.13_constellation.json @@ -39,7 +39,9 @@ "orf7a:T120I", "n:R203M", "n:D377Y", - "nuc:G29742T" + "nuc:G29742T", + "nuc:T8782C", + "orf8:L84S" ], "rules": { "min_alt": "26", diff --git a/lineage_constellations/AY.14_constellation.json b/lineage_constellations/AY.14_constellation.json index 8e7ceb56..5f4aedcb 100644 --- a/lineage_constellations/AY.14_constellation.json +++ b/lineage_constellations/AY.14_constellation.json @@ -39,7 +39,9 @@ "orf7a:T120I", "n:R203M", "n:D377Y", - "nuc:G29742T" + "nuc:G29742T", + "nuc:T8782C", + "orf8:L84S" ], "rules": { "min_alt": "26", diff --git a/lineage_constellations/AY.15_constellation.json b/lineage_constellations/AY.15_constellation.json index 6492d9fe..8728d3ec 100644 --- a/lineage_constellations/AY.15_constellation.json +++ b/lineage_constellations/AY.15_constellation.json @@ -40,7 +40,9 @@ "orf7a:T120I", "n:R203M", "n:D377Y", - "nuc:G29742T" + "nuc:G29742T", + "nuc:T8782C", + "orf8:L84S" ], "rules": { "min_alt": "27", diff --git a/lineage_constellations/AY.16.1_constellation.json b/lineage_constellations/AY.16.1_constellation.json index 79d0d000..ac8dfd46 100644 --- a/lineage_constellations/AY.16.1_constellation.json +++ b/lineage_constellations/AY.16.1_constellation.json @@ -45,7 +45,9 @@ "nuc:A28271T", "n:R203M", "n:D377Y", - "nuc:G29742T" + "nuc:G29742T", + "nuc:T8782C", + "orf8:L84S" ], "rules": { "min_alt": "32", diff --git a/lineage_constellations/AY.16_constellation.json b/lineage_constellations/AY.16_constellation.json index 96441b6d..c207dad1 100644 --- a/lineage_constellations/AY.16_constellation.json +++ b/lineage_constellations/AY.16_constellation.json @@ -39,7 +39,9 @@ "orf7a:T120I", "n:R203M", "n:D377Y", - "nuc:G29742T" + "nuc:G29742T", + "nuc:T8782C", + "orf8:L84S" ], "rules": { "min_alt": "26", diff --git a/lineage_constellations/AY.17_constellation.json b/lineage_constellations/AY.17_constellation.json index 2b0371f6..8ed7a15b 100644 --- a/lineage_constellations/AY.17_constellation.json +++ b/lineage_constellations/AY.17_constellation.json @@ -42,7 +42,9 @@ "nuc:T28271A", "n:R203M", "n:D377Y", - "nuc:G29742T" + "nuc:G29742T", + "nuc:T8782C", + "orf8:L84S" ], "rules": { "min_alt": "29", diff --git a/lineage_constellations/AY.18_constellation.json b/lineage_constellations/AY.18_constellation.json index b3c84385..cd379caa 100644 --- a/lineage_constellations/AY.18_constellation.json +++ b/lineage_constellations/AY.18_constellation.json @@ -40,7 +40,9 @@ "nuc:C27807T", "n:R203M", "n:D377Y", - "nuc:G29742T" + "nuc:G29742T", + "nuc:T8782C", + "orf8:L84S" ], "rules": { "min_alt": "27", diff --git a/lineage_constellations/AY.1_constellation.json b/lineage_constellations/AY.1_constellation.json index 18b275f4..b268ae4b 100644 --- a/lineage_constellations/AY.1_constellation.json +++ b/lineage_constellations/AY.1_constellation.json @@ -37,7 +37,9 @@ "n:R203M", "n:G215C", "n:D377Y", - "nuc:G29742T" + "nuc:G29742T", + "nuc:T8782C", + "orf8:L84S" ], "rules": { "min_alt": "25", diff --git a/lineage_constellations/AY.20_constellation.json b/lineage_constellations/AY.20_constellation.json index 6c7a105f..5fd92433 100644 --- a/lineage_constellations/AY.20_constellation.json +++ b/lineage_constellations/AY.20_constellation.json @@ -38,7 +38,9 @@ "n:R203M", "n:G215C", "n:D377Y", - "nuc:G29742T" + "nuc:G29742T", + "nuc:T8782C", + "orf8:L84S" ], "rules": { "min_alt": "26", diff --git a/lineage_constellations/AY.21_constellation.json b/lineage_constellations/AY.21_constellation.json index 37e54ec6..7518cf8d 100644 --- a/lineage_constellations/AY.21_constellation.json +++ b/lineage_constellations/AY.21_constellation.json @@ -42,7 +42,9 @@ "nuc:C29167T", "nuc:G29227T", "n:D377Y", - "nuc:G29742T" + "nuc:G29742T", + "nuc:T8782C", + "orf8:L84S" ], "rules": { "min_alt": "30", diff --git a/lineage_constellations/AY.22_constellation.json b/lineage_constellations/AY.22_constellation.json index 4332f9b4..d1874c31 100644 --- a/lineage_constellations/AY.22_constellation.json +++ b/lineage_constellations/AY.22_constellation.json @@ -42,7 +42,9 @@ "n:R203M", "n:G215C", "n:D377Y", - "nuc:G29742T" + "nuc:G29742T", + "nuc:T8782C", + "orf8:L84S" ], "rules": { "min_alt": "30", diff --git a/lineage_constellations/AY.23.1_constellation.json b/lineage_constellations/AY.23.1_constellation.json index 708dd97b..6e088d40 100644 --- a/lineage_constellations/AY.23.1_constellation.json +++ b/lineage_constellations/AY.23.1_constellation.json @@ -46,7 +46,9 @@ "n:R203M", "n:G215C", "n:D377Y", - "nuc:G29742T" + "nuc:G29742T", + "nuc:T8782C", + "orf8:L84S" ], "rules": { "min_alt": "33", diff --git a/lineage_constellations/AY.23_constellation.json b/lineage_constellations/AY.23_constellation.json index 616ebbcd..a38dbc3a 100644 --- a/lineage_constellations/AY.23_constellation.json +++ b/lineage_constellations/AY.23_constellation.json @@ -38,7 +38,9 @@ "n:R203M", "n:G215C", "n:D377Y", - "nuc:G29742T" + "nuc:G29742T", + "nuc:T8782C", + "orf8:L84S" ], "rules": { "min_alt": "25", diff --git a/lineage_constellations/AY.24_constellation.json b/lineage_constellations/AY.24_constellation.json index 2f7aafc3..0e4bd1cd 100644 --- a/lineage_constellations/AY.24_constellation.json +++ b/lineage_constellations/AY.24_constellation.json @@ -33,7 +33,9 @@ "orf7a:T120I", "n:R203M", "n:D377Y", - "nuc:G29742T" + "nuc:G29742T", + "nuc:T8782C", + "orf8:L84S" ], "rules": { "min_alt": "20", diff --git a/lineage_constellations/AY.27_constellation.json b/lineage_constellations/AY.27_constellation.json index 12824008..774dedb7 100644 --- a/lineage_constellations/AY.27_constellation.json +++ b/lineage_constellations/AY.27_constellation.json @@ -35,7 +35,9 @@ "n:R203M", "n:D377Y", "nuc:G29422T", - "nuc:G29742T" + "nuc:G29742T", + "nuc:T8782C", + "orf8:L84S" ], "rules": { "min_alt": "22", diff --git a/lineage_constellations/AY.28_constellation.json b/lineage_constellations/AY.28_constellation.json index 5a0ab562..caea9d2a 100644 --- a/lineage_constellations/AY.28_constellation.json +++ b/lineage_constellations/AY.28_constellation.json @@ -36,7 +36,9 @@ "orf7a:T120I", "n:R203M", "n:D377Y", - "nuc:G29742T" + "nuc:G29742T", + "nuc:T8782C", + "orf8:L84S" ], "rules": { "min_alt": "23", diff --git a/lineage_constellations/AY.29.1_constellation.json b/lineage_constellations/AY.29.1_constellation.json index 86b54dae..34fee1bb 100644 --- a/lineage_constellations/AY.29.1_constellation.json +++ b/lineage_constellations/AY.29.1_constellation.json @@ -39,7 +39,9 @@ "n:R203M", "n:G215C", "n:D377Y", - "nuc:G29742T" + "nuc:G29742T", + "nuc:T8782C", + "orf8:L84S" ], "rules": { "min_alt": "27", diff --git a/lineage_constellations/AY.29_constellation.json b/lineage_constellations/AY.29_constellation.json index 1a566bd1..fde962d6 100644 --- a/lineage_constellations/AY.29_constellation.json +++ b/lineage_constellations/AY.29_constellation.json @@ -38,7 +38,9 @@ "n:R203M", "n:G215C", "n:D377Y", - "nuc:G29742T" + "nuc:G29742T", + "nuc:T8782C", + "orf8:L84S" ], "rules": { "min_alt": "26", diff --git a/lineage_constellations/AY.2_constellation.json b/lineage_constellations/AY.2_constellation.json index d955dfc8..8217b4ec 100644 --- a/lineage_constellations/AY.2_constellation.json +++ b/lineage_constellations/AY.2_constellation.json @@ -38,7 +38,9 @@ "orf7a:T120I", "n:R203M", "n:D377Y", - "nuc:G29742T" + "nuc:G29742T", + "nuc:T8782C", + "orf8:L84S" ], "rules": { "min_alt": "25", diff --git a/lineage_constellations/AY.3.1_constellation.json b/lineage_constellations/AY.3.1_constellation.json index 80843849..143cb01c 100644 --- a/lineage_constellations/AY.3.1_constellation.json +++ b/lineage_constellations/AY.3.1_constellation.json @@ -43,7 +43,9 @@ "nuc:G29050A", "n:D377Y", "nuc:C29509T", - "nuc:G29742T" + "nuc:G29742T", + "nuc:T8782C", + "orf8:L84S" ], "rules": { "min_alt": "30", diff --git a/lineage_constellations/AY.30_constellation.json b/lineage_constellations/AY.30_constellation.json index 98889a01..1090e496 100644 --- a/lineage_constellations/AY.30_constellation.json +++ b/lineage_constellations/AY.30_constellation.json @@ -43,7 +43,9 @@ "n:R203M", "n:D377Y", "n:R385K", - "nuc:G29742T" + "nuc:G29742T", + "nuc:T8782C", + "orf8:L84S" ], "rules": { "min_alt": "30", diff --git a/lineage_constellations/AY.31_constellation.json b/lineage_constellations/AY.31_constellation.json index 427edcfc..dcaf92eb 100644 --- a/lineage_constellations/AY.31_constellation.json +++ b/lineage_constellations/AY.31_constellation.json @@ -46,7 +46,9 @@ "n:T362I", "n:D377Y", "n:R385K", - "nuc:G29742T" + "nuc:G29742T", + "nuc:T8782C", + "orf8:L84S" ], "rules": { "min_alt": "33", diff --git a/lineage_constellations/AY.32_constellation.json b/lineage_constellations/AY.32_constellation.json index 8ec05daa..2b6fb852 100644 --- a/lineage_constellations/AY.32_constellation.json +++ b/lineage_constellations/AY.32_constellation.json @@ -40,7 +40,9 @@ "n:R203M", "n:G215C", "n:D377Y", - "nuc:G29742T" + "nuc:G29742T", + "nuc:T8782C", + "orf8:L84S" ], "rules": { "min_alt": "27", diff --git a/lineage_constellations/AY.34.1_constellation.json b/lineage_constellations/AY.34.1_constellation.json index 0dea7c55..3f55aaee 100644 --- a/lineage_constellations/AY.34.1_constellation.json +++ b/lineage_constellations/AY.34.1_constellation.json @@ -47,7 +47,9 @@ "n:G215C", "n:L230F", "n:D377Y", - "nuc:G29742T" + "nuc:G29742T", + "nuc:T8782C", + "orf8:L84S" ], "rules": { "min_alt": "35", diff --git a/lineage_constellations/AY.35_constellation.json b/lineage_constellations/AY.35_constellation.json index aec9f43b..d8f14d5f 100644 --- a/lineage_constellations/AY.35_constellation.json +++ b/lineage_constellations/AY.35_constellation.json @@ -42,7 +42,9 @@ "orf7a:T120I", "n:R203M", "n:D377Y", - "nuc:G29742T" + "nuc:G29742T", + "nuc:T8782C", + "orf8:L84S" ], "rules": { "min_alt": "29", diff --git a/lineage_constellations/AY.36_constellation.json b/lineage_constellations/AY.36_constellation.json index c873ee7a..d86f7938 100644 --- a/lineage_constellations/AY.36_constellation.json +++ b/lineage_constellations/AY.36_constellation.json @@ -41,7 +41,9 @@ "n:G215C", "n:D377Y", "nuc:C29738T", - "nuc:G29742T" + "nuc:G29742T", + "nuc:T8782C", + "orf8:L84S" ], "rules": { "min_alt": "29", diff --git a/lineage_constellations/AY.38_constellation.json b/lineage_constellations/AY.38_constellation.json index dc500730..d5c8e723 100644 --- a/lineage_constellations/AY.38_constellation.json +++ b/lineage_constellations/AY.38_constellation.json @@ -33,7 +33,9 @@ "orf7a:T120I", "n:R203M", "n:D377Y", - "nuc:T29742G" + "nuc:T29742G", + "nuc:T8782C", + "orf8:L84S" ], "rules": { "min_alt": "20", diff --git a/lineage_constellations/AY.39.1.1_constellation.json b/lineage_constellations/AY.39.1.1_constellation.json index cf6079f9..150e6fbe 100644 --- a/lineage_constellations/AY.39.1.1_constellation.json +++ b/lineage_constellations/AY.39.1.1_constellation.json @@ -40,7 +40,9 @@ "n:R203M", "n:G215C", "n:D377Y", - "nuc:G29742T" + "nuc:G29742T", + "nuc:T8782C", + "orf8:L84S" ], "rules": { "min_alt": "28", diff --git a/lineage_constellations/AY.39.2_constellation.json b/lineage_constellations/AY.39.2_constellation.json index f5e34796..54e5c256 100644 --- a/lineage_constellations/AY.39.2_constellation.json +++ b/lineage_constellations/AY.39.2_constellation.json @@ -41,7 +41,9 @@ "n:R203M", "n:G215C", "n:D377Y", - "nuc:G29742T" + "nuc:G29742T", + "nuc:T8782C", + "orf8:L84S" ], "rules": { "min_alt": "29", diff --git a/lineage_constellations/AY.3_constellation.json b/lineage_constellations/AY.3_constellation.json index 4ff07037..c53d3d0c 100644 --- a/lineage_constellations/AY.3_constellation.json +++ b/lineage_constellations/AY.3_constellation.json @@ -37,7 +37,9 @@ "n:R203M", "n:G215C", "n:D377Y", - "nuc:G29742T" + "nuc:G29742T", + "nuc:T8782C", + "orf8:L84S" ], "rules": { "min_alt": "24", diff --git a/lineage_constellations/AY.4.1_constellation.json b/lineage_constellations/AY.4.1_constellation.json index 365be964..c2d20763 100644 --- a/lineage_constellations/AY.4.1_constellation.json +++ b/lineage_constellations/AY.4.1_constellation.json @@ -42,7 +42,9 @@ "n:R203M", "n:G215C", "n:D377Y", - "nuc:G29742T" + "nuc:G29742T", + "nuc:T8782C", + "orf8:L84S" ], "rules": { "min_alt": "30", diff --git a/lineage_constellations/AY.4.2.1_constellation.json b/lineage_constellations/AY.4.2.1_constellation.json index d34477ad..37141eb2 100644 --- a/lineage_constellations/AY.4.2.1_constellation.json +++ b/lineage_constellations/AY.4.2.1_constellation.json @@ -48,7 +48,9 @@ "n:R203M", "n:G215C", "n:D377Y", - "nuc:G29742T" + "nuc:G29742T", + "nuc:T8782C", + "orf8:L84S" ], "rules": { "min_alt": "36", diff --git a/lineage_constellations/AY.4.2_constellation.json b/lineage_constellations/AY.4.2_constellation.json index ab2a0902..793f67b5 100644 --- a/lineage_constellations/AY.4.2_constellation.json +++ b/lineage_constellations/AY.4.2_constellation.json @@ -44,7 +44,9 @@ "n:R203M", "n:G215C", "n:D377Y", - "nuc:G29742T" + "nuc:G29742T", + "nuc:T8782C", + "orf8:L84S" ], "rules": { "min_alt": "32", diff --git a/lineage_constellations/AY.4.3_constellation.json b/lineage_constellations/AY.4.3_constellation.json index ee6b3540..aa4ba55d 100644 --- a/lineage_constellations/AY.4.3_constellation.json +++ b/lineage_constellations/AY.4.3_constellation.json @@ -38,7 +38,9 @@ "n:R203M", "n:G215C", "n:D377Y", - "nuc:G29742T" + "nuc:G29742T", + "nuc:T8782C", + "orf8:L84S" ], "rules": { "min_alt": "26", diff --git a/lineage_constellations/AY.4.4_constellation.json b/lineage_constellations/AY.4.4_constellation.json index b03560c5..e9422fdb 100644 --- a/lineage_constellations/AY.4.4_constellation.json +++ b/lineage_constellations/AY.4.4_constellation.json @@ -40,7 +40,9 @@ "n:R203M", "n:G215C", "n:D377Y", - "nuc:G29742T" + "nuc:G29742T", + "nuc:T8782C", + "orf8:L84S" ], "rules": { "min_alt": "28", diff --git a/lineage_constellations/AY.4.5_constellation.json b/lineage_constellations/AY.4.5_constellation.json index be471a2c..f7099ccf 100644 --- a/lineage_constellations/AY.4.5_constellation.json +++ b/lineage_constellations/AY.4.5_constellation.json @@ -39,7 +39,9 @@ "n:R203M", "n:G215C", "n:D377Y", - "nuc:G29742T" + "nuc:G29742T", + "nuc:T8782C", + "orf8:L84S" ], "rules": { "min_alt": "27", diff --git a/lineage_constellations/AY.40_constellation.json b/lineage_constellations/AY.40_constellation.json index edc8edf9..40e393aa 100644 --- a/lineage_constellations/AY.40_constellation.json +++ b/lineage_constellations/AY.40_constellation.json @@ -48,7 +48,9 @@ "n:R203M", "n:D377Y", "n:R385K", - "nuc:G29742T" + "nuc:G29742T", + "nuc:T8782C", + "orf8:L84S" ], "rules": { "min_alt": "35", diff --git a/lineage_constellations/AY.41_constellation.json b/lineage_constellations/AY.41_constellation.json index 218d13f8..608a8c80 100644 --- a/lineage_constellations/AY.41_constellation.json +++ b/lineage_constellations/AY.41_constellation.json @@ -45,7 +45,9 @@ "n:R203M", "n:G215C", "n:D377Y", - "nuc:G29742T" + "nuc:G29742T", + "nuc:T8782C", + "orf8:L84S" ], "rules": { "min_alt": "32", diff --git a/lineage_constellations/AY.42_constellation.json b/lineage_constellations/AY.42_constellation.json index 47c5813f..347fec77 100644 --- a/lineage_constellations/AY.42_constellation.json +++ b/lineage_constellations/AY.42_constellation.json @@ -37,7 +37,9 @@ "n:R203M", "n:G215C", "n:D377Y", - "nuc:G29742T" + "nuc:G29742T", + "nuc:T8782C", + "orf8:L84S" ], "rules": { "min_alt": "25", diff --git a/lineage_constellations/AY.43_constellation.json b/lineage_constellations/AY.43_constellation.json index d3c11478..dd4f8d28 100644 --- a/lineage_constellations/AY.43_constellation.json +++ b/lineage_constellations/AY.43_constellation.json @@ -37,7 +37,9 @@ "n:R203M", "n:G215C", "n:D377Y", - "nuc:G29742T" + "nuc:G29742T", + "nuc:T8782C", + "orf8:L84S" ], "rules": { "min_alt": "24", diff --git a/lineage_constellations/AY.45_constellation.json b/lineage_constellations/AY.45_constellation.json index 476efb01..bef529ee 100644 --- a/lineage_constellations/AY.45_constellation.json +++ b/lineage_constellations/AY.45_constellation.json @@ -37,7 +37,9 @@ "n:R203M", "n:G215C", "n:D377Y", - "nuc:G29742T" + "nuc:G29742T", + "nuc:T8782C", + "orf8:L84S" ], "rules": { "min_alt": "24", diff --git a/lineage_constellations/AY.46.1_constellation.json b/lineage_constellations/AY.46.1_constellation.json index 7152f1f6..7cee86aa 100644 --- a/lineage_constellations/AY.46.1_constellation.json +++ b/lineage_constellations/AY.46.1_constellation.json @@ -38,7 +38,9 @@ "n:R203M", "n:G215C", "n:D377Y", - "nuc:G29742T" + "nuc:G29742T", + "nuc:T8782C", + "orf8:L84S" ], "rules": { "min_alt": "25", diff --git a/lineage_constellations/AY.46.2_constellation.json b/lineage_constellations/AY.46.2_constellation.json index 38a4f747..3227d08e 100644 --- a/lineage_constellations/AY.46.2_constellation.json +++ b/lineage_constellations/AY.46.2_constellation.json @@ -38,7 +38,9 @@ "n:R203M", "n:G215C", "n:D377Y", - "nuc:G29742T" + "nuc:G29742T", + "nuc:T8782C", + "orf8:L84S" ], "rules": { "min_alt": "25", diff --git a/lineage_constellations/AY.46.3_constellation.json b/lineage_constellations/AY.46.3_constellation.json index e2c5dda8..a16babad 100644 --- a/lineage_constellations/AY.46.3_constellation.json +++ b/lineage_constellations/AY.46.3_constellation.json @@ -40,7 +40,9 @@ "n:R203M", "n:G215C", "n:D377Y", - "nuc:G29742T" + "nuc:G29742T", + "nuc:T8782C", + "orf8:L84S" ], "rules": { "min_alt": "27", diff --git a/lineage_constellations/AY.46.4_constellation.json b/lineage_constellations/AY.46.4_constellation.json index fae40071..7985b7fa 100644 --- a/lineage_constellations/AY.46.4_constellation.json +++ b/lineage_constellations/AY.46.4_constellation.json @@ -38,7 +38,9 @@ "n:R203M", "n:G215C", "n:D377Y", - "nuc:G29742T" + "nuc:G29742T", + "nuc:T8782C", + "orf8:L84S" ], "rules": { "min_alt": "25", diff --git a/lineage_constellations/AY.46.5_constellation.json b/lineage_constellations/AY.46.5_constellation.json index 29cc6dfd..0b0c7771 100644 --- a/lineage_constellations/AY.46.5_constellation.json +++ b/lineage_constellations/AY.46.5_constellation.json @@ -39,7 +39,9 @@ "n:R203M", "n:G215C", "n:D377Y", - "nuc:G29742T" + "nuc:G29742T", + "nuc:T8782C", + "orf8:L84S" ], "rules": { "min_alt": "26", diff --git a/lineage_constellations/AY.46.6_constellation.json b/lineage_constellations/AY.46.6_constellation.json index bb946a61..be4dc594 100644 --- a/lineage_constellations/AY.46.6_constellation.json +++ b/lineage_constellations/AY.46.6_constellation.json @@ -38,7 +38,9 @@ "n:R203M", "n:G215C", "n:D377Y", - "nuc:G29742T" + "nuc:G29742T", + "nuc:T8782C", + "orf8:L84S" ], "rules": { "min_alt": "25", diff --git a/lineage_constellations/AY.46_constellation.json b/lineage_constellations/AY.46_constellation.json index 652492f1..75d9fc60 100644 --- a/lineage_constellations/AY.46_constellation.json +++ b/lineage_constellations/AY.46_constellation.json @@ -36,7 +36,9 @@ "n:R203M", "n:G215C", "n:D377Y", - "nuc:G29742T" + "nuc:G29742T", + "nuc:T8782C", + "orf8:L84S" ], "rules": { "min_alt": "23", diff --git a/lineage_constellations/AY.47_constellation.json b/lineage_constellations/AY.47_constellation.json index 67905dbd..b0c72672 100644 --- a/lineage_constellations/AY.47_constellation.json +++ b/lineage_constellations/AY.47_constellation.json @@ -35,7 +35,9 @@ "n:G18V", "n:R203M", "n:D377Y", - "nuc:G29742T" + "nuc:G29742T", + "nuc:T8782C", + "orf8:L84S" ], "rules": { "min_alt": "22", diff --git a/lineage_constellations/AY.48_constellation.json b/lineage_constellations/AY.48_constellation.json index b2495e33..81271a2d 100644 --- a/lineage_constellations/AY.48_constellation.json +++ b/lineage_constellations/AY.48_constellation.json @@ -40,7 +40,9 @@ "orf8:E19*", "n:R203M", "n:D377Y", - "nuc:G29742T" + "nuc:G29742T", + "nuc:T8782C", + "orf8:L84S" ], "rules": { "min_alt": "27", diff --git a/lineage_constellations/AY.49_constellation.json b/lineage_constellations/AY.49_constellation.json index e1b657d3..bec74d87 100644 --- a/lineage_constellations/AY.49_constellation.json +++ b/lineage_constellations/AY.49_constellation.json @@ -43,7 +43,9 @@ "orf8:Q29L", "n:R203M", "n:D377Y", - "nuc:G29742T" + "nuc:G29742T", + "nuc:T8782C", + "orf8:L84S" ], "rules": { "min_alt": "30", diff --git a/lineage_constellations/AY.4_constellation.json b/lineage_constellations/AY.4_constellation.json index daca70a2..4acb214d 100644 --- a/lineage_constellations/AY.4_constellation.json +++ b/lineage_constellations/AY.4_constellation.json @@ -37,7 +37,9 @@ "n:R203M", "n:G215C", "n:D377Y", - "nuc:G29742T" + "nuc:G29742T", + "nuc:T8782C", + "orf8:L84S" ], "rules": { "min_alt": "25", diff --git a/lineage_constellations/AY.5.1_constellation.json b/lineage_constellations/AY.5.1_constellation.json index 10aa67fa..3d5e38f3 100644 --- a/lineage_constellations/AY.5.1_constellation.json +++ b/lineage_constellations/AY.5.1_constellation.json @@ -40,7 +40,9 @@ "n:G215C", "n:S327L", "n:D377Y", - "nuc:G29742T" + "nuc:G29742T", + "nuc:T8782C", + "orf8:L84S" ], "rules": { "min_alt": "27", diff --git a/lineage_constellations/AY.5.2_constellation.json b/lineage_constellations/AY.5.2_constellation.json index dcc241cf..d30a1b5c 100644 --- a/lineage_constellations/AY.5.2_constellation.json +++ b/lineage_constellations/AY.5.2_constellation.json @@ -40,7 +40,9 @@ "n:G215C", "n:S327L", "n:D377Y", - "nuc:G29742T" + "nuc:G29742T", + "nuc:T8782C", + "orf8:L84S" ], "rules": { "min_alt": "27", diff --git a/lineage_constellations/AY.5.3_constellation.json b/lineage_constellations/AY.5.3_constellation.json index 6f368019..f6e5503b 100644 --- a/lineage_constellations/AY.5.3_constellation.json +++ b/lineage_constellations/AY.5.3_constellation.json @@ -39,7 +39,9 @@ "n:G215C", "n:S327L", "n:D377Y", - "nuc:G29742T" + "nuc:G29742T", + "nuc:T8782C", + "orf8:L84S" ], "rules": { "min_alt": "26", diff --git a/lineage_constellations/AY.5.4_constellation.json b/lineage_constellations/AY.5.4_constellation.json index cb321d76..5f445e5c 100644 --- a/lineage_constellations/AY.5.4_constellation.json +++ b/lineage_constellations/AY.5.4_constellation.json @@ -39,7 +39,9 @@ "n:G215C", "n:S327L", "n:D377Y", - "nuc:G29742T" + "nuc:G29742T", + "nuc:T8782C", + "orf8:L84S" ], "rules": { "min_alt": "26", diff --git a/lineage_constellations/AY.50_constellation.json b/lineage_constellations/AY.50_constellation.json index a629f15c..9d11bfc4 100644 --- a/lineage_constellations/AY.50_constellation.json +++ b/lineage_constellations/AY.50_constellation.json @@ -41,7 +41,9 @@ "n:G179V", "n:R203M", "n:D377Y", - "nuc:G29742T" + "nuc:G29742T", + "nuc:T8782C", + "orf8:L84S" ], "rules": { "min_alt": "28", diff --git a/lineage_constellations/AY.51_constellation.json b/lineage_constellations/AY.51_constellation.json index 51ef52e0..6fd625cb 100644 --- a/lineage_constellations/AY.51_constellation.json +++ b/lineage_constellations/AY.51_constellation.json @@ -41,7 +41,9 @@ "orf8:D119N", "n:R203M", "n:D377Y", - "nuc:G29742T" + "nuc:G29742T", + "nuc:T8782C", + "orf8:L84S" ], "rules": { "min_alt": "28", diff --git a/lineage_constellations/AY.52_constellation.json b/lineage_constellations/AY.52_constellation.json index e5b5ba35..1cd66d67 100644 --- a/lineage_constellations/AY.52_constellation.json +++ b/lineage_constellations/AY.52_constellation.json @@ -40,7 +40,9 @@ "orf7a:T120I", "n:R203M", "n:D377Y", - "nuc:G29742T" + "nuc:G29742T", + "nuc:T8782C", + "orf8:L84S" ], "rules": { "min_alt": "27", diff --git a/lineage_constellations/AY.53_constellation.json b/lineage_constellations/AY.53_constellation.json index ccba5a7d..8e311d3b 100644 --- a/lineage_constellations/AY.53_constellation.json +++ b/lineage_constellations/AY.53_constellation.json @@ -40,7 +40,9 @@ "orf7a:T120I", "n:R203M", "n:D377Y", - "nuc:G29742T" + "nuc:G29742T", + "nuc:T8782C", + "orf8:L84S" ], "rules": { "min_alt": "27", diff --git a/lineage_constellations/AY.54_constellation.json b/lineage_constellations/AY.54_constellation.json index 012f6dff..937dd555 100644 --- a/lineage_constellations/AY.54_constellation.json +++ b/lineage_constellations/AY.54_constellation.json @@ -39,7 +39,9 @@ "orf7a:T120I", "n:R203M", "n:D377Y", - "nuc:G29742T" + "nuc:G29742T", + "nuc:T8782C", + "orf8:L84S" ], "rules": { "min_alt": "26", diff --git a/lineage_constellations/AY.55_constellation.json b/lineage_constellations/AY.55_constellation.json index 263f407f..973efe6d 100644 --- a/lineage_constellations/AY.55_constellation.json +++ b/lineage_constellations/AY.55_constellation.json @@ -33,7 +33,9 @@ "orf7a:T120I", "n:R203M", "n:D377Y", - "nuc:G29742T" + "nuc:G29742T", + "nuc:T8782C", + "orf8:L84S" ], "rules": { "min_alt": "20", diff --git a/lineage_constellations/AY.56_constellation.json b/lineage_constellations/AY.56_constellation.json index f057f7c2..7c377294 100644 --- a/lineage_constellations/AY.56_constellation.json +++ b/lineage_constellations/AY.56_constellation.json @@ -34,7 +34,9 @@ "nuc:G27870T", "n:R203M", "n:D377Y", - "nuc:G29742T" + "nuc:G29742T", + "nuc:T8782C", + "orf8:L84S" ], "rules": { "min_alt": "21", diff --git a/lineage_constellations/AY.58_constellation.json b/lineage_constellations/AY.58_constellation.json index 3d1a3e4c..f37a01f4 100644 --- a/lineage_constellations/AY.58_constellation.json +++ b/lineage_constellations/AY.58_constellation.json @@ -33,7 +33,9 @@ "orf7a:T120I", "n:R203M", "n:D377Y", - "nuc:G29742T" + "nuc:G29742T", + "nuc:T8782C", + "orf8:L84S" ], "rules": { "min_alt": "20", diff --git a/lineage_constellations/AY.59_constellation.json b/lineage_constellations/AY.59_constellation.json index e8702ef8..3c3a99af 100644 --- a/lineage_constellations/AY.59_constellation.json +++ b/lineage_constellations/AY.59_constellation.json @@ -34,7 +34,9 @@ "orf7a:T120I", "n:R203M", "n:D377Y", - "nuc:G29742T" + "nuc:G29742T", + "nuc:T8782C", + "orf8:L84S" ], "rules": { "min_alt": "21", diff --git a/lineage_constellations/AY.5_constellation.json b/lineage_constellations/AY.5_constellation.json index 99a1c2c0..bfdf2441 100644 --- a/lineage_constellations/AY.5_constellation.json +++ b/lineage_constellations/AY.5_constellation.json @@ -37,7 +37,9 @@ "n:R203M", "n:G215C", "n:D377Y", - "nuc:G29742T" + "nuc:G29742T", + "nuc:T8782C", + "orf8:L84S" ], "rules": { "min_alt": "24", diff --git a/lineage_constellations/AY.60_constellation.json b/lineage_constellations/AY.60_constellation.json index d25907e0..ed06fc56 100644 --- a/lineage_constellations/AY.60_constellation.json +++ b/lineage_constellations/AY.60_constellation.json @@ -38,7 +38,9 @@ "nuc:T28271A", "n:R203M", "n:D377Y", - "nuc:G29742T" + "nuc:G29742T", + "nuc:T8782C", + "orf8:L84S" ], "rules": { "min_alt": "25", diff --git a/lineage_constellations/AY.61_constellation.json b/lineage_constellations/AY.61_constellation.json index 21a5468f..cba5799f 100644 --- a/lineage_constellations/AY.61_constellation.json +++ b/lineage_constellations/AY.61_constellation.json @@ -33,7 +33,9 @@ "orf7a:T120I", "n:R203M", "n:D377Y", - "nuc:G29742T" + "nuc:G29742T", + "nuc:T8782C", + "orf8:L84S" ], "rules": { "min_alt": "20", diff --git a/lineage_constellations/AY.62_constellation.json b/lineage_constellations/AY.62_constellation.json index 9600ccbc..74f7b5d7 100644 --- a/lineage_constellations/AY.62_constellation.json +++ b/lineage_constellations/AY.62_constellation.json @@ -36,7 +36,9 @@ "n:R203M", "n:D377Y", "nuc:G29440A", - "nuc:G29742T" + "nuc:G29742T", + "nuc:T8782C", + "orf8:L84S" ], "rules": { "min_alt": "23", diff --git a/lineage_constellations/AY.63_constellation.json b/lineage_constellations/AY.63_constellation.json index 06e4c5c8..e04f0cd9 100644 --- a/lineage_constellations/AY.63_constellation.json +++ b/lineage_constellations/AY.63_constellation.json @@ -40,7 +40,9 @@ "n:R203M", "n:D377Y", "orf10:R20I", - "nuc:G29742T" + "nuc:G29742T", + "nuc:T8782C", + "orf8:L84S" ], "rules": { "min_alt": "27", diff --git a/lineage_constellations/AY.64_constellation.json b/lineage_constellations/AY.64_constellation.json index 42ecde35..6733e758 100644 --- a/lineage_constellations/AY.64_constellation.json +++ b/lineage_constellations/AY.64_constellation.json @@ -39,7 +39,9 @@ "n:R203M", "n:D377Y", "nuc:G29688T", - "nuc:G29742T" + "nuc:G29742T", + "nuc:T8782C", + "orf8:L84S" ], "rules": { "min_alt": "26", diff --git a/lineage_constellations/AY.65_constellation.json b/lineage_constellations/AY.65_constellation.json index 01302be0..066cbbb2 100644 --- a/lineage_constellations/AY.65_constellation.json +++ b/lineage_constellations/AY.65_constellation.json @@ -34,7 +34,9 @@ "orf7a:T120I", "n:R203M", "n:D377Y", - "nuc:G29742T" + "nuc:G29742T", + "nuc:T8782C", + "orf8:L84S" ], "rules": { "min_alt": "21", diff --git a/lineage_constellations/AY.66_constellation.json b/lineage_constellations/AY.66_constellation.json index e2076e19..10b0661f 100644 --- a/lineage_constellations/AY.66_constellation.json +++ b/lineage_constellations/AY.66_constellation.json @@ -35,7 +35,9 @@ "orf8:D119N", "n:R203M", "n:D377Y", - "nuc:G29742T" + "nuc:G29742T", + "nuc:T8782C", + "orf8:L84S" ], "rules": { "min_alt": "22", diff --git a/lineage_constellations/AY.67_constellation.json b/lineage_constellations/AY.67_constellation.json index 94b8b31d..a5feb3d2 100644 --- a/lineage_constellations/AY.67_constellation.json +++ b/lineage_constellations/AY.67_constellation.json @@ -34,7 +34,9 @@ "orf7a:T120I", "n:R203M", "n:D377Y", - "nuc:G29742T" + "nuc:G29742T", + "nuc:T8782C", + "orf8:L84S" ], "rules": { "min_alt": "21", diff --git a/lineage_constellations/AY.68_constellation.json b/lineage_constellations/AY.68_constellation.json index d43bf3a4..7dd47057 100644 --- a/lineage_constellations/AY.68_constellation.json +++ b/lineage_constellations/AY.68_constellation.json @@ -39,7 +39,9 @@ "orf7a:T120I", "n:R203M", "n:D377Y", - "nuc:G29742T" + "nuc:G29742T", + "nuc:T8782C", + "orf8:L84S" ], "rules": { "min_alt": "26", diff --git a/lineage_constellations/AY.69_constellation.json b/lineage_constellations/AY.69_constellation.json index c78747bb..6f13807c 100644 --- a/lineage_constellations/AY.69_constellation.json +++ b/lineage_constellations/AY.69_constellation.json @@ -37,7 +37,9 @@ "orf7a:T120I", "n:R203M", "n:D377Y", - "nuc:G29742T" + "nuc:G29742T", + "nuc:T8782C", + "orf8:L84S" ], "rules": { "min_alt": "24", diff --git a/lineage_constellations/AY.6_constellation.json b/lineage_constellations/AY.6_constellation.json index a17a47ba..bf8291b5 100644 --- a/lineage_constellations/AY.6_constellation.json +++ b/lineage_constellations/AY.6_constellation.json @@ -37,7 +37,9 @@ "n:R203M", "n:G215C", "n:D377Y", - "nuc:G29742T" + "nuc:G29742T", + "nuc:T8782C", + "orf8:L84S" ], "rules": { "min_alt": "24", diff --git a/lineage_constellations/AY.7.1_constellation.json b/lineage_constellations/AY.7.1_constellation.json index df799132..dc9953ce 100644 --- a/lineage_constellations/AY.7.1_constellation.json +++ b/lineage_constellations/AY.7.1_constellation.json @@ -43,7 +43,9 @@ "n:R203M", "n:G215C", "n:D377Y", - "nuc:G29742T" + "nuc:G29742T", + "nuc:T8782C", + "orf8:L84S" ], "rules": { "min_alt": "30", diff --git a/lineage_constellations/AY.7.2_constellation.json b/lineage_constellations/AY.7.2_constellation.json index 74c4549f..dd31de7c 100644 --- a/lineage_constellations/AY.7.2_constellation.json +++ b/lineage_constellations/AY.7.2_constellation.json @@ -43,7 +43,9 @@ "n:R203M", "n:G215C", "n:D377Y", - "nuc:G29742T" + "nuc:G29742T", + "nuc:T8782C", + "orf8:L84S" ], "rules": { "min_alt": "30", diff --git a/lineage_constellations/AY.70_constellation.json b/lineage_constellations/AY.70_constellation.json index 0b85cdad..b564eb07 100644 --- a/lineage_constellations/AY.70_constellation.json +++ b/lineage_constellations/AY.70_constellation.json @@ -36,7 +36,9 @@ "n:R209I", "n:M210I", "n:D377Y", - "nuc:G29742T" + "nuc:G29742T", + "nuc:T8782C", + "orf8:L84S" ], "rules": { "min_alt": "23", diff --git a/lineage_constellations/AY.71_constellation.json b/lineage_constellations/AY.71_constellation.json index 850d17e5..e9f6d52d 100644 --- a/lineage_constellations/AY.71_constellation.json +++ b/lineage_constellations/AY.71_constellation.json @@ -34,7 +34,9 @@ "orf7a:T120I", "n:R203M", "n:D377Y", - "nuc:G29742T" + "nuc:G29742T", + "nuc:T8782C", + "orf8:L84S" ], "rules": { "min_alt": "21", diff --git a/lineage_constellations/AY.72_constellation.json b/lineage_constellations/AY.72_constellation.json index 03f26f00..31662be5 100644 --- a/lineage_constellations/AY.72_constellation.json +++ b/lineage_constellations/AY.72_constellation.json @@ -37,7 +37,9 @@ "orf7a:T120I", "n:R203M", "n:D377Y", - "nuc:G29742T" + "nuc:G29742T", + "nuc:T8782C", + "orf8:L84S" ], "rules": { "min_alt": "24", diff --git a/lineage_constellations/AY.73_constellation.json b/lineage_constellations/AY.73_constellation.json index f8b2c221..642c9ddf 100644 --- a/lineage_constellations/AY.73_constellation.json +++ b/lineage_constellations/AY.73_constellation.json @@ -37,7 +37,9 @@ "n:R203M", "n:P207L", "n:D377Y", - "nuc:G29742T" + "nuc:G29742T", + "nuc:T8782C", + "orf8:L84S" ], "rules": { "min_alt": "24", diff --git a/lineage_constellations/AY.74_constellation.json b/lineage_constellations/AY.74_constellation.json index cf1d98a7..8b9819bb 100644 --- a/lineage_constellations/AY.74_constellation.json +++ b/lineage_constellations/AY.74_constellation.json @@ -37,7 +37,9 @@ "n:R203M", "n:K373N", "n:D377Y", - "nuc:G29742T" + "nuc:G29742T", + "nuc:T8782C", + "orf8:L84S" ], "rules": { "min_alt": "24", diff --git a/lineage_constellations/AY.75_constellation.json b/lineage_constellations/AY.75_constellation.json index bc639e8f..d62993e6 100644 --- a/lineage_constellations/AY.75_constellation.json +++ b/lineage_constellations/AY.75_constellation.json @@ -33,7 +33,9 @@ "orf7a:T120I", "n:R203M", "n:D377Y", - "nuc:G29742T" + "nuc:G29742T", + "nuc:T8782C", + "orf8:L84S" ], "rules": { "min_alt": "20", diff --git a/lineage_constellations/AY.76_constellation.json b/lineage_constellations/AY.76_constellation.json index 70e97fce..ccf20121 100644 --- a/lineage_constellations/AY.76_constellation.json +++ b/lineage_constellations/AY.76_constellation.json @@ -38,7 +38,9 @@ "n:R203M", "n:G215C", "n:D377Y", - "nuc:G29742T" + "nuc:G29742T", + "nuc:T8782C", + "orf8:L84S" ], "rules": { "min_alt": "25", diff --git a/lineage_constellations/AY.77_constellation.json b/lineage_constellations/AY.77_constellation.json index d8f75daa..da2e6ca7 100644 --- a/lineage_constellations/AY.77_constellation.json +++ b/lineage_constellations/AY.77_constellation.json @@ -38,7 +38,9 @@ "n:R203M", "n:G215C", "n:D377Y", - "nuc:G29742T" + "nuc:G29742T", + "nuc:T8782C", + "orf8:L84S" ], "rules": { "min_alt": "25", diff --git a/lineage_constellations/AY.78_constellation.json b/lineage_constellations/AY.78_constellation.json index 1a878f21..fc6db5f6 100644 --- a/lineage_constellations/AY.78_constellation.json +++ b/lineage_constellations/AY.78_constellation.json @@ -39,7 +39,9 @@ "nuc:C29200T", "nuc:G29227A", "n:D377Y", - "nuc:G29742T" + "nuc:G29742T", + "nuc:T8782C", + "orf8:L84S" ], "rules": { "min_alt": "26", diff --git a/lineage_constellations/AY.79_constellation.json b/lineage_constellations/AY.79_constellation.json index 5f4fbca9..1bb5a8e5 100644 --- a/lineage_constellations/AY.79_constellation.json +++ b/lineage_constellations/AY.79_constellation.json @@ -37,7 +37,9 @@ "n:R203M", "n:G215C", "n:D377Y", - "nuc:G29742T" + "nuc:G29742T", + "nuc:T8782C", + "orf8:L84S" ], "rules": { "min_alt": "24", diff --git a/lineage_constellations/AY.7_constellation.json b/lineage_constellations/AY.7_constellation.json index 984d3163..3b42c49f 100644 --- a/lineage_constellations/AY.7_constellation.json +++ b/lineage_constellations/AY.7_constellation.json @@ -40,7 +40,9 @@ "n:R203M", "n:G215C", "n:D377Y", - "nuc:G29742T" + "nuc:G29742T", + "nuc:T8782C", + "orf8:L84S" ], "rules": { "min_alt": "27", diff --git a/lineage_constellations/AY.80_constellation.json b/lineage_constellations/AY.80_constellation.json index 0300cb8a..b370b146 100644 --- a/lineage_constellations/AY.80_constellation.json +++ b/lineage_constellations/AY.80_constellation.json @@ -39,7 +39,9 @@ "n:R203M", "n:G215C", "n:D377Y", - "nuc:G29742T" + "nuc:G29742T", + "nuc:T8782C", + "orf8:L84S" ], "rules": { "min_alt": "26", diff --git a/lineage_constellations/AY.81_constellation.json b/lineage_constellations/AY.81_constellation.json index bec203ad..922d09cf 100644 --- a/lineage_constellations/AY.81_constellation.json +++ b/lineage_constellations/AY.81_constellation.json @@ -39,7 +39,9 @@ "n:R203M", "n:G215C", "n:D377Y", - "nuc:G29742T" + "nuc:G29742T", + "nuc:T8782C", + "orf8:L84S" ], "rules": { "min_alt": "26", diff --git a/lineage_constellations/AY.82_constellation.json b/lineage_constellations/AY.82_constellation.json index 3fe2c86b..51b84053 100644 --- a/lineage_constellations/AY.82_constellation.json +++ b/lineage_constellations/AY.82_constellation.json @@ -38,7 +38,9 @@ "n:R203M", "n:G215C", "n:D377Y", - "nuc:G29742T" + "nuc:G29742T", + "nuc:T8782C", + "orf8:L84S" ], "rules": { "min_alt": "25", diff --git a/lineage_constellations/AY.83_constellation.json b/lineage_constellations/AY.83_constellation.json index d7f6cf1a..9ad161c3 100644 --- a/lineage_constellations/AY.83_constellation.json +++ b/lineage_constellations/AY.83_constellation.json @@ -39,7 +39,9 @@ "n:R203M", "n:G215C", "n:D377Y", - "nuc:G29742T" + "nuc:G29742T", + "nuc:T8782C", + "orf8:L84S" ], "rules": { "min_alt": "26", diff --git a/lineage_constellations/AY.84_constellation.json b/lineage_constellations/AY.84_constellation.json index 415c2184..ee9b71fa 100644 --- a/lineage_constellations/AY.84_constellation.json +++ b/lineage_constellations/AY.84_constellation.json @@ -38,7 +38,9 @@ "n:R203M", "n:G215C", "n:D377Y", - "nuc:G29742T" + "nuc:G29742T", + "nuc:T8782C", + "orf8:L84S" ], "rules": { "min_alt": "25", diff --git a/lineage_constellations/AY.85_constellation.json b/lineage_constellations/AY.85_constellation.json index cdd18d8e..e27b4604 100644 --- a/lineage_constellations/AY.85_constellation.json +++ b/lineage_constellations/AY.85_constellation.json @@ -41,7 +41,9 @@ "n:R203M", "n:G215C", "n:D377Y", - "nuc:G29742T" + "nuc:G29742T", + "nuc:T8782C", + "orf8:L84S" ], "rules": { "min_alt": "28", diff --git a/lineage_constellations/AY.86_constellation.json b/lineage_constellations/AY.86_constellation.json index 167c593e..67beb193 100644 --- a/lineage_constellations/AY.86_constellation.json +++ b/lineage_constellations/AY.86_constellation.json @@ -39,7 +39,9 @@ "n:G215C", "n:D377Y", "n:T391I", - "nuc:G29742T" + "nuc:G29742T", + "nuc:T8782C", + "orf8:L84S" ], "rules": { "min_alt": "26", diff --git a/lineage_constellations/AY.87_constellation.json b/lineage_constellations/AY.87_constellation.json index 51abf71d..27113683 100644 --- a/lineage_constellations/AY.87_constellation.json +++ b/lineage_constellations/AY.87_constellation.json @@ -39,7 +39,9 @@ "n:R203M", "n:G215C", "n:D377Y", - "nuc:G29742T" + "nuc:G29742T", + "nuc:T8782C", + "orf8:L84S" ], "rules": { "min_alt": "26", diff --git a/lineage_constellations/AY.88_constellation.json b/lineage_constellations/AY.88_constellation.json index 018d637e..53e6ebce 100644 --- a/lineage_constellations/AY.88_constellation.json +++ b/lineage_constellations/AY.88_constellation.json @@ -38,7 +38,9 @@ "n:R203M", "n:G215C", "n:D377Y", - "nuc:G29742T" + "nuc:G29742T", + "nuc:T8782C", + "orf8:L84S" ], "rules": { "min_alt": "25", diff --git a/lineage_constellations/AY.89_constellation.json b/lineage_constellations/AY.89_constellation.json index 11b57cca..c9d49562 100644 --- a/lineage_constellations/AY.89_constellation.json +++ b/lineage_constellations/AY.89_constellation.json @@ -40,7 +40,9 @@ "n:R203M", "n:G215C", "n:D377Y", - "nuc:G29742T" + "nuc:G29742T", + "nuc:T8782C", + "orf8:L84S" ], "rules": { "min_alt": "28", diff --git a/lineage_constellations/AY.8_constellation.json b/lineage_constellations/AY.8_constellation.json index 00484a6e..20476b68 100644 --- a/lineage_constellations/AY.8_constellation.json +++ b/lineage_constellations/AY.8_constellation.json @@ -46,7 +46,9 @@ "n:R203M", "nuc:T29095C", "n:D377Y", - "nuc:G29742T" + "nuc:G29742T", + "nuc:T8782C", + "orf8:L84S" ], "rules": { "min_alt": "33", diff --git a/lineage_constellations/AY.9.1_constellation.json b/lineage_constellations/AY.9.1_constellation.json index ddfd3846..f8535aba 100644 --- a/lineage_constellations/AY.9.1_constellation.json +++ b/lineage_constellations/AY.9.1_constellation.json @@ -36,7 +36,9 @@ "orf7a:T120I", "n:R203M", "n:D377Y", - "nuc:G29742T" + "nuc:G29742T", + "nuc:T8782C", + "orf8:L84S" ], "rules": { "min_alt": "23", diff --git a/lineage_constellations/AY.9.2.1_constellation.json b/lineage_constellations/AY.9.2.1_constellation.json index efffc4fd..c32508e8 100644 --- a/lineage_constellations/AY.9.2.1_constellation.json +++ b/lineage_constellations/AY.9.2.1_constellation.json @@ -39,7 +39,9 @@ "orf7a:T120I", "n:R203M", "n:D377Y", - "nuc:G29742T" + "nuc:G29742T", + "nuc:T8782C", + "orf8:L84S" ], "rules": { "min_alt": "26", diff --git a/lineage_constellations/AY.9.2_constellation.json b/lineage_constellations/AY.9.2_constellation.json index ec68cdc4..665b7b51 100644 --- a/lineage_constellations/AY.9.2_constellation.json +++ b/lineage_constellations/AY.9.2_constellation.json @@ -36,7 +36,9 @@ "orf7a:T120I", "n:R203M", "n:D377Y", - "nuc:G29742T" + "nuc:G29742T", + "nuc:T8782C", + "orf8:L84S" ], "rules": { "min_alt": "23", diff --git a/lineage_constellations/AY.90_constellation.json b/lineage_constellations/AY.90_constellation.json index 7140cb71..7519d688 100644 --- a/lineage_constellations/AY.90_constellation.json +++ b/lineage_constellations/AY.90_constellation.json @@ -38,7 +38,9 @@ "n:R203M", "n:G215C", "n:D377Y", - "nuc:G29742T" + "nuc:G29742T", + "nuc:T8782C", + "orf8:L84S" ], "rules": { "min_alt": "25", diff --git a/lineage_constellations/AY.91.1_constellation.json b/lineage_constellations/AY.91.1_constellation.json index 057f3ac6..eec0b97b 100644 --- a/lineage_constellations/AY.91.1_constellation.json +++ b/lineage_constellations/AY.91.1_constellation.json @@ -44,7 +44,9 @@ "n:G215C", "n:D377Y", "nuc:G29742T", - "nuc:G29744A" + "nuc:G29744A", + "nuc:T8782C", + "orf8:L84S" ], "rules": { "min_alt": "31", diff --git a/lineage_constellations/AY.91_constellation.json b/lineage_constellations/AY.91_constellation.json index 2ea6df2a..15de9279 100644 --- a/lineage_constellations/AY.91_constellation.json +++ b/lineage_constellations/AY.91_constellation.json @@ -39,7 +39,9 @@ "n:G215C", "n:D377Y", "nuc:G29742T", - "nuc:G29744A" + "nuc:G29744A", + "nuc:T8782C", + "orf8:L84S" ], "rules": { "min_alt": "26", diff --git a/lineage_constellations/AY.92_constellation.json b/lineage_constellations/AY.92_constellation.json index e8eced14..12c60d81 100644 --- a/lineage_constellations/AY.92_constellation.json +++ b/lineage_constellations/AY.92_constellation.json @@ -38,7 +38,9 @@ "n:G215C", "nuc:C29167T", "n:D377Y", - "nuc:G29742T" + "nuc:G29742T", + "nuc:T8782C", + "orf8:L84S" ], "rules": { "min_alt": "25", diff --git a/lineage_constellations/AY.93_constellation.json b/lineage_constellations/AY.93_constellation.json index 683eecab..adac7da4 100644 --- a/lineage_constellations/AY.93_constellation.json +++ b/lineage_constellations/AY.93_constellation.json @@ -39,7 +39,9 @@ "n:R203M", "n:G215C", "n:D377Y", - "nuc:G29742T" + "nuc:G29742T", + "nuc:T8782C", + "orf8:L84S" ], "rules": { "min_alt": "26", diff --git a/lineage_constellations/AY.94_constellation.json b/lineage_constellations/AY.94_constellation.json index 5d43a94c..e8f3a21f 100644 --- a/lineage_constellations/AY.94_constellation.json +++ b/lineage_constellations/AY.94_constellation.json @@ -38,7 +38,9 @@ "n:R203M", "n:G215C", "n:D377Y", - "nuc:G29742T" + "nuc:G29742T", + "nuc:T8782C", + "orf8:L84S" ], "rules": { "min_alt": "25", diff --git a/lineage_constellations/AY.95_constellation.json b/lineage_constellations/AY.95_constellation.json index 06ec13f4..3baf60f6 100644 --- a/lineage_constellations/AY.95_constellation.json +++ b/lineage_constellations/AY.95_constellation.json @@ -39,7 +39,9 @@ "n:R203M", "n:G215C", "n:D377Y", - "nuc:G29742T" + "nuc:G29742T", + "nuc:T8782C", + "orf8:L84S" ], "rules": { "min_alt": "26", diff --git a/lineage_constellations/AY.96_constellation.json b/lineage_constellations/AY.96_constellation.json index f7dd2d90..6fd8b0df 100644 --- a/lineage_constellations/AY.96_constellation.json +++ b/lineage_constellations/AY.96_constellation.json @@ -39,7 +39,9 @@ "n:R203M", "n:G215C", "n:D377Y", - "nuc:G29742T" + "nuc:G29742T", + "nuc:T8782C", + "orf8:L84S" ], "rules": { "min_alt": "25", diff --git a/lineage_constellations/AY.97_constellation.json b/lineage_constellations/AY.97_constellation.json index 6537b291..00353ef6 100644 --- a/lineage_constellations/AY.97_constellation.json +++ b/lineage_constellations/AY.97_constellation.json @@ -38,7 +38,9 @@ "n:G215C", "n:S327L", "n:D377Y", - "nuc:G29742T" + "nuc:G29742T", + "nuc:T8782C", + "orf8:L84S" ], "rules": { "min_alt": "25", diff --git a/lineage_constellations/AY.98.1_constellation.json b/lineage_constellations/AY.98.1_constellation.json index a809c1f6..6da10115 100644 --- a/lineage_constellations/AY.98.1_constellation.json +++ b/lineage_constellations/AY.98.1_constellation.json @@ -43,7 +43,9 @@ "n:R203M", "n:G215C", "n:D377Y", - "nuc:G29742T" + "nuc:G29742T", + "nuc:T8782C", + "orf8:L84S" ], "rules": { "min_alt": "30", diff --git a/lineage_constellations/AY.99.1_constellation.json b/lineage_constellations/AY.99.1_constellation.json index 1ce0bf3a..1718736f 100644 --- a/lineage_constellations/AY.99.1_constellation.json +++ b/lineage_constellations/AY.99.1_constellation.json @@ -40,7 +40,9 @@ "n:R203M", "n:G215C", "n:D377Y", - "nuc:G29742T" + "nuc:G29742T", + "nuc:T8782C", + "orf8:L84S" ], "rules": { "min_alt": "27", diff --git a/lineage_constellations/AY.99.2_constellation.json b/lineage_constellations/AY.99.2_constellation.json index 0b4415ac..e541b963 100644 --- a/lineage_constellations/AY.99.2_constellation.json +++ b/lineage_constellations/AY.99.2_constellation.json @@ -41,7 +41,9 @@ "n:R203M", "n:G215C", "n:D377Y", - "nuc:G29742T" + "nuc:G29742T", + "nuc:T8782C", + "orf8:L84S" ], "rules": { "min_alt": "28", diff --git a/lineage_constellations/AY.99_constellation.json b/lineage_constellations/AY.99_constellation.json index 53218c7e..767ffaf1 100644 --- a/lineage_constellations/AY.99_constellation.json +++ b/lineage_constellations/AY.99_constellation.json @@ -39,7 +39,9 @@ "n:R203M", "n:G215C", "n:D377Y", - "nuc:G29742T" + "nuc:G29742T", + "nuc:T8782C", + "orf8:L84S" ], "rules": { "min_alt": "26", diff --git a/lineage_constellations/AY.9_constellation.json b/lineage_constellations/AY.9_constellation.json index bb26832b..6cdbf4cc 100644 --- a/lineage_constellations/AY.9_constellation.json +++ b/lineage_constellations/AY.9_constellation.json @@ -33,7 +33,9 @@ "orf7a:T120I", "n:R203M", "n:D377Y", - "nuc:G29742T" + "nuc:G29742T", + "nuc:T8782C", + "orf8:L84S" ], "rules": { "min_alt": "20",