diff --git a/deduplicate_keeping_first.py b/deduplicate_keeping_first.py
index a8faad44..8ab60d74 100644
--- a/deduplicate_keeping_first.py
+++ b/deduplicate_keeping_first.py
@@ -34,5 +34,4 @@
 # Write back to file
 with open('lineages.csv', 'w') as f:
     f.writelines(d)
-    f.write('\n')
 
diff --git a/deduplicate_keeping_last.py b/deduplicate_keeping_last.py
index c0693c9b..39398908 100644
--- a/deduplicate_keeping_last.py
+++ b/deduplicate_keeping_last.py
@@ -34,5 +34,4 @@
 # Write back to file
 with open('lineages.csv', 'w') as f:
     f.writelines(d)
-    f.write('\n')
 
diff --git a/lineages.csv b/lineages.csv
index 0710c7ef..96aaaf71 100644
--- a/lineages.csv
+++ b/lineages.csv
@@ -1812765,7 +1812765,6 @@ Israel/ICH-741229203/2022,BA.5.2
 Australia/NSW-ICPMR-27885/2022,BA.5.2
 Indonesia/JK-NIHRD-WGS-22-04906/2022,BA.5.2
 Belgium/UZA-UA-CV8526121861/2022,BA.5.2
-USA/CA-HLX-STM-XWB36B78Y/2022,BA.5.2
 Denmark/DCGC-526739/2022,BA.5.2
 Indonesia/JK-CW62-0886/2022,BA.5.2
 Denmark/DCGC-531286/2022,BA.5.2
@@ -1813972,7 +1813971,6 @@ Indonesia/JK-CW62-1001/2022,BA.5.2
 Italy/EMR_AUSLRomagna_C059-22-30/2022,BA.5.2.22
 USA/NY-PRL-220613_02B03/2022,BA.5.2
 England/QEUH-3E39A81/2022,BA.5.2
-Indonesia/JK-NIHRD-MI-22-31701/2022,BA.5.2
 Netherlands/LI-RIVM-103047/2022,BA.5.2
 USA/MT-MTPHL-4024143/2022,BA.5.2
 USA/FL-CDC-STM-VPGAHXSW7/2022,BA.5.2.9
@@ -1920209,7 +1920207,6 @@ USA/CA-CDC-LC0734622/2022,BA.5.2.1
 USA/CA-CDC-LC0737187/2022,BA.5.2.1
 Spain/CT-HUVH-E60446/2022,BA.5.2.1
 Scotland/EDB64464/2022,BA.5.2.1
-Belgium/UZA-UA-CV8524407991/2022,BA.5.2.1
 USA/NY-PRL-220613_03B11/2022,BA.5.2.1
 Israel/SMC-7077819/2022,BA.5.2.1
 USA/FL-CDC-STM-M4D8E8TZ9/2022,BA.5.2.1
@@ -1921166,7 +1921163,6 @@ Singapore/5489/2022,BA.5.2.1
 USA/NY-PRL-220608_02B24/2022,BA.5.2.1
 USA/NY-CDC-QDX38152332/2022,BA.5.2.1
 USA/NV-CDC-QDX37911362/2022,BA.5.2.1
-Belgium/ULB-IBC_CV8490649163/2022,BA.5.2.1
 USA/AR-PHL-M00601034-F1-1/2022,BA.5.2.1
 USA/TX-CDC-STM-BTK5ZRY6G/2022,BA.5.2.1
 USA/TX-HMH-MCoV-102537/2022,BA.5.2.1
@@ -1922630,7 +1922626,6 @@ Switzerland/ZH-UZH-IMV-3ba64a54/2022,BA.5.2.1
 Belgium/AZDelta-2226-01455/2022,BA.5.2.1
 USA/NE-NPHL22-16721/2022,BA.5.2.1
 USA/WA-CDC-UW22062239451/2022,BA.5.2.1
-Belgium/AZDelta-2225-04135/2022,BA.5.2.1
 Israel/ICH-741241380/2022,BA.5.2.1
 Denmark/DCGC-530132/2022,BA.5.2.1
 England/LSPA-3E708DF/2022,BA.5.2.1
@@ -1922660,7 +1922655,6 @@ Brazil/RJ-FIOCRUZ-15144/2022,BA.5.2.1
 Belgium/Jessa_11-2224-004618ZOL/2022,BA.5.2.1
 USA/ND-NDDH-17413/2022,BA.5.2.1
 USA/NC-CDC-LC0728556/2022,BA.5.2.1
-Belgium/12211850601/2022,BA.5.2.1
 USA/WA-UW-22062018386/2022,BA.5.2.1
 USA/CA-CDC-LC0750264/2022,BA.5.2.1
 USA/CA-CDC-LC0734200/2022,BA.5.2.1
@@ -1923310,7 +1923304,6 @@ USA/MD-HP32828-PIDKUQZRAK/2022,BA.5.2.1
 Scotland/EDB63625/2022,BA.5.2.1
 Australia/NSW-ICPMR-28467/2022,BA.5.2.1
 Canada/AB-ABPHL-72104/2022,BA.5.2.1
-Belgium/UZA-UA-CV8521949043/2022,BA.5.2.1
 Brazil/SP-IB_159819/2022,BA.5.2.1
 USA/TX-Curative-404185/2022,BA.5.2.1
 England/LSPA-3E3CA51/2022,BA.5.2.1
@@ -1923362,7 +1923355,6 @@ Brazil/RJ-FIOCRUZ-12874/2022,BA.5.2.1
 USA/CA-CDC-LC0750397/2022,BA.5.2.1
 Australia/NSW-ICPMR-28312/2022,BA.5.2.1
 USA/NV-CDC-LC0725888/2022,BA.5.2.1
-Luxembourg/LNS4484693/2022,BA.5.2.1
 Israel/ICH-741240454/2022,BA.5.2.1
 Spain/MD-HRYC-12385730/2022,BA.5.2.1
 Belgium/UZA-UA-CV8523396868/2022,BA.5.2.1
@@ -1923930,7 +1923922,6 @@ Denmark/DCGC-540309/2022,BA.5.2.1
 England/LSPA-3EA0AA3/2022,BA.5.2.1
 England/LSPA-3E491B6/2022,BA.5.2.1
 England/PHEP-YYFG1DZ/2022,BA.5.2.1
-Belgium/AZDelta-2227-11489/2022,BA.5.2.1
 Australia/VIC62734/2022,BA.5.2.1
 Brunei/7122117899/2022,BA.5.2.1
 Belgium/AZDelta-2226-01456/2022,BA.5.2.1
@@ -1924261,7 +1924252,6 @@ USA/NY-PRL-220705_00A08/2022,BA.5.2.1
 Denmark/DCGC-535052/2022,BA.5.2.1
 USA/NY-PRL-220630_00D18/2022,BA.5.2.1
 USA/AZ-ASU83866/2022,BA.5.2.1
-Belgium/UZB_5482022070413/2022,BA.5.2.1
 USA/PA-CDC-STM-4HBYXEE7W/2022,BA.5.2.1
 Israel/ICH-741233890/2022,BA.5.2.1
 USA/MA-MGB-06928/2022,BA.5.2.1
@@ -1925005,7 +1924995,6 @@ Canada/AB-ABPHL-68289/2022,BA.5.2.1
 Spain/CT-HUB05703/2022,BA.5.2.1
 Belgium/rega-43100/2022,BA.5.2.1
 England/PHEC-YYF3REW/2022,BA.5.2.1
-Belgium/AZDelta-2227-01617/2022,BA.5.2.1
 Singapore/6487/2022,BA.5.2.1
 Luxembourg/LNS9844098/2022,BA.5.2.1
 USA/IL-CDC-STM-U2WC5STHC/2022,BA.5.2.1
@@ -1925113,7 +1925102,6 @@ Germany/BY-RKI-I-859749/2022,BA.5.2.1
 England/LSPA-3EA666D/2022,BA.5.2.1
 USA/CO-CDPHE-2103389620/2022,BA.5.2.1
 Denmark/DCGC-541634/2022,BA.5.2.1
-Belgium/AZDelta-2227-06496/2022,BA.5.2.1
 USA/CA-CDC-LC0707202/2022,BA.5.2.1
 Kenya/SS9030/2022,BA.5.2.1
 USA/NY-CDC-LC0676702/2022,BA.5.2.1
@@ -1925788,7 +1925776,6 @@ USA/TX-HMH-103933/2022,BA.5.2.1
 Australia/QLD0x00F831/2022,BA.5.2.1
 Australia/QLD0x00F59F/2022,BF.18
 USA/NJ-CDC-LC0643427/2022,BA.5.2.1
-Belgium/Jessa_11-2227-006789/2022,BA.5.2.1
 USA/UT-UPHL-220702038006/2022,BA.5.2.1
 USA/CA-CDC-LC0749594/2022,BA.5.2.1
 USA/TX-CDC-STM-D5HD6VSNX/2022,BA.5.2.1
@@ -1925944,7 +1925931,6 @@ USA/NE-NM_L355048631/2022,BA.5.2.1
 England/LSPA-3EA1B63/2022,BA.5.2.1
 Denmark/DCGC-532822/2022,BA.5.2.1
 Italy/PIE_IRCC_15885148/2022,BA.5.2.1
-Japan/TKYnat2522/2022,BA.5.2.1
 Germany/NW-RKI-I-879540/2022,BA.5.2.1
 USA/CA-USAFSAM-S16382/2022,BA.5.2.1
 Spain/MD-HULP-061191051/2022,BA.5.2.1
@@ -1925963,7 +1925949,6 @@ Germany/NW-RKI-I-861362/2022,BA.5.2.1
 England/PHEP-YYFYHUA/2022,BA.5.2.1
 Sweden/261757127200/2022,BA.5.2.1
 England/PHEC-YYFATDU/2022,BA.5.2.1
-USA/MI-UM-10045539302/2022,BA.5.2.1
 USA/CA-SC-270962/2022,BF.21
 Japan/TKYnat2475/2022,BA.5.2.1
 Scotland/SCOT-14267/2022,BA.5.2.1
@@ -1927008,7 +1926993,6 @@ Denmark/DCGC-540858/2022,BA.5.2.1
 Japan/IC-11902/2022,BA.5.2.1
 Spain/CT-HUB05671/2022,BA.5.2.1
 USA/NY-CDC-LC0714715/2022,BA.5.2.1
-Belgium/AZDelta-2225-08898/2022,BA.5.2.1
 USA/CA-CDC-LC0735801/2022,BA.5.2.1
 USA/UT-UPHL-220702186132/2022,BA.5.2.1
 USA/VA-CDC-LC0741664/2022,BA.5.2.1
@@ -1927910,7 +1927894,6 @@ USA/CA-CDC-LC0748626/2022,BA.5.2.1
 Germany/SH-RKI-I-871989/2022,BA.5.2.1
 USA/CO-CDPHE-2103289287/2022,BA.5.2.1
 Australia/QLD0x00FACD/2022,BA.5.2.1
-Netherlands/NH-inBiome-211858/2022,BA.5.2.1
 England/PHEP-YYFDJ6X/2022,BA.5.2.1
 England/LSPA-3EAE38C/2022,BA.5.2.1
 USA/NY-PRL-220705_01J23/2022,BA.5.2.1
@@ -1946240,7 +1946223,6 @@ Denmark/DCGC-545822/2022,BA.5.2
 England/PHEC-YYFAF4O/2022,BA.5.2
 USA/GA-CDC-LC0728077/2022,BA.5.2
 Israel/ICH-741240773/2022,BA.5.2
-USA/MA-MGB-07101/2022,BA.5.2
 Brazil/CE-FIOCRUZ-94053CE/2022,BA.5.2.10
 India/HR-INSACOG-NII-883/2022,BA.5.2
 Indonesia/JK-NIHRD-WGS.22.05126/2022,BA.5.2
@@ -1946446,7 +1946428,6 @@ USA/NY-PRL-220705_02B23/2022,BA.5.2
 Denmark/DCGC-541115/2022,BA.5.2
 Spain/CT-HUB05731/2022,BA.5.2
 Israel/ICH-741234714/2022,BA.5.2
-France/PDL-HMN-22062230226/2022,BA.5.2
 England/PHEC-YYFOZ9R/2022,BA.5.2
 USA/PA-CDC-STM-Q5GEDE7JR/2022,BA.5.2
 France/NOR-HMN-22062150548/2022,BA.5.2
@@ -1949835,7 +1949816,6 @@ Chile/RM-76267/2022,BA.5.2.22
 Denmark/DCGC-544707/2022,BA.5.2
 Germany/BY-RKI-I-868530/2022,BA.5.2.22
 Indonesia/JK-CW62-1137/2022,BA.5.2
-Philippines/PH-RITM-1807/2022,BA.5.2
 England/PHEP-YYF8IBS/2022,BA.5.2
 USA/DE-CDC-LC0724866/2022,BA.5.2
 England/LSPA-3EA5446/2022,BA.5.2
@@ -2022446,7 +2022426,6 @@ USA/SC-CDC-QDX38874560/2022,BA.5.2.1
 USA/NJ-CDC-QDX39412506/2022,BA.5.2.1
 Scotland/SCOT-15518/2022,BA.5.2.1
 USA/CA-CDC-LC0785412/2022,BA.5.2.1
-USA/ND-NDDH-17629/2022,BA.5.2.1
 Israel/SMC-7089965/2022,BA.5.2.1
 Singapore/6154/2022,BA.5.2.1
 USA/TX-CDC-STM-2RDVN8T6T/2022,BF.21
@@ -2022480,7 +2022459,6 @@ Japan/PG-284831/2022,BA.5.2.1
 USA/CA-CDC-QDX38875772/2022,BA.5.2.1
 England/LSPA-3F2B975/2022,BA.5.2.1
 Germany/HH-RKI-I-880837/2022,BA.5.2.1
-Denmark/DCGC-557841/2022,BA.5.2.1
 USA/MI-CDC-QDX39414228/2022,BA.5.2.1
 Japan/PG-278157/2022,BA.5.2.1
 USA/CA-CDC-QDX39122478/2022,BF.21
@@ -2022584,7 +2022562,6 @@ England/LSPA-3F06B5C/2022,BA.5.2.1
 USA/NV-NSPHL-22-00064636/2022,BF.21
 Australia/QLD0x0101BE/2022,BF.18
 USA/IL-CDC-QDX38677707/2022,BA.5.2.1
-Germany/BW-RKI-I-923210/2022,BA.5.2.1
 Germany/NW-RKI-I-949692/2022,BA.5.2.1
 USA/TX-Curative-421752/2022,BA.5.2.1
 Germany/NI-RKI-I-936023/2022,BA.5.2.1
@@ -2022725,7 +2022702,6 @@ USA/CO-CDPHE-2103461236/2022,BA.5.2.1
 USA/ID-CDC-LC0748963/2022,BA.5.2.1
 Australia/VIC65045/2022,BA.5.2.1
 USA/CA-HLX-STM-CQKAU9YYF/2022,BA.5.2.1
-England/QEUH-3F5B1FC/2022,BA.5.2.1
 Italy/APU-IZSPB-PT7172/2022,BA.5.2.1
 Japan/RIMD11611/2022,BA.5.2.1
 USA/CA-CDC-QDX38830861/2022,BA.5.2.1
@@ -2022759,7 +2022735,6 @@ USA/AZ-CDC-LC0764087/2022,BA.5.2.1
 France/ARA-cerba-22Q0670248/2022,BA.5.2.1
 Germany/BB-RKI-I-936895/2022,BA.5.2.1
 Denmark/DCGC-534381/2022,BA.5.2.1
-England/LSPA-3F5A9C8/2022,BA.5.2.1
 USA/OH-CDC-QDX38923486/2022,BA.5.2.1
 Scotland/EDB68184/2022,BA.5.2.1
 USA/PA-CDC-QDX39169109/2022,BA.5.2.1
@@ -2022804,7 +2022779,6 @@ England/LSPA-3E9D6E1/2022,BA.5.2.1
 USA/CA-CDC-QDX39548739/2022,BA.5.2.1
 Finland/SYN-7589/2022,BA.5.2.1
 Brazil/RJ-NVBS20827GENOV829334487451/2022,BA.5.2.1
-Norway/28160/2022,BA.5.2.1
 Israel/ICH-741246029/2022,BA.5.2.1
 England/LSPA-3F28F1C/2022,BA.5.2.1
 USA/NY-PRL-220708_03E14/2022,BA.5.2.1
@@ -2022838,7 +2022812,6 @@ Indonesia/JK-NIHRD-WGS-22-13676/2022,BA.5.2.1
 Germany/BY-RKI-I-859733/2022,BA.5.2.1
 USA/MN-MDH-27776/2022,BA.5.2.1
 France/PAC-LBZCentre-420801274/2022,BA.5.2.1
-USA/NJ-CDC-QDX38874974/2022,BA.5.2.1
 Indonesia/BA-NIHRD-WGS-22-10957/2022,BA.5.2.1
 USA/NJ-PHEL-V22025885/2022,BA.5.2.1
 Greece/27237/2022,BA.5.2.1
@@ -2022870,7 +2022843,6 @@ Belgium/Jessa_21-2232-000909/2022,BA.5.2.1
 USA/CA-HLX-STM-YX8UA237G/2022,BA.5.2.1
 USA/NV-CDC-LC0725603/2022,BA.5.2.1
 USA/IL-CDC-QDX39324869/2022,BA.5.2.1
-Belgium/UZB_548202207041/2022,BA.5.2.1
 Japan/TKYkbm28442/2022,BF.22
 France/NAQ-GENBIO-A41GN1920166/2022,BA.5.2.1
 USA/TX-CDC-QDX39122376/2022,BA.5.2.1
@@ -2022928,7 +2022900,6 @@ Spain/MD-HULP-014174120/2022,BA.5.2.1
 England/QEUH-3EB9B86/2022,BA.5.2.1
 England/PHEP-YYFNEDJ/2022,BA.5.2.1
 Japan/TKYkbm30113/2022,BA.5.2.1
-Germany/NW-RKI-I-933739/2022,BA.5.2.1
 USA/CA-HLX-STM-QQYD7938F/2022,BA.5.2.1
 Finland/P-7054/2022,BA.5.2.1
 USA/CO-CDPHE-2103355038/2022,BA.5.2.1
@@ -2023004,7 +2022975,6 @@ USA/FL-CDC-LC0801633/2022,BA.5.2.1
 Japan/TKYkbm33020/2022,BA.5.2.1
 USA/CA-Stanford-92_S08/2022,BA.5.2.1
 Germany/NW-RKI-I-939864/2022,BA.5.2.1
-USA/NY-MSK-6525/2022,BA.5.2.1
 USA/GA-CDC-STM-EM6VG7VE5/2022,BA.5.2.1
 USA/WA-CDC-UW22071017732/2022,BA.5.2.1
 Germany/BW-RKI-I-954055/2022,BA.5.2.1
@@ -2023122,7 +2023092,6 @@ Italy/VEN-IZSVe-22RS8254-18_VI/2022,BA.5.2.1
 USA/CA-CDC-LC0750640/2022,BA.5.2.1
 Scotland/EDB67351/2022,BA.5.2.1
 Denmark/DCGC-560186/2022,BA.5.2.1
-Netherlands/NB-MVD-CWGS2203123/2022,BA.5.2.1
 USA/NC-CORVASEQ-CLT-010728/2022,BA.5.2.1
 Japan/TKYmbc0727/2022,BA.5.2.1
 USA/NY-PRL-220708_01K23/2022,BA.5.2.1
@@ -2023155,7 +2023124,6 @@ USA/CA-HLX-STM-MXN6BAP3G/2022,BF.21
 USA/WA-CDC-QDX38970177/2022,BA.5.2.1
 Scotland/SCOT-17239/2022,BA.5.2.1
 USA/CA-HLX-STM-3Y4E2NEDH/2022,BA.5.2.1
-Slovakia/BA_22_00033462/2022,BA.5.2.1
 France/IDF-cerba-22Q0152462/2022,BA.5.2.1
 USA/CA-CDC-LC0776814/2022,BA.5.2.1
 USA/NJ-CDC-LC0810035/2022,BA.5.2.1
@@ -2023268,7 +2023236,6 @@ USA/NC-CDC-LC0728031/2022,BA.5.2.1
 USA/MA-MGB-06942/2022,BA.5.2.1
 Israel/ICH-741229659/2022,BA.5.2.1
 USA/LA-CDC-STM-TP9E8YBH5/2022,BA.5.2.1
-Switzerland/GE-HUG-38706157/2022,BA.5.2.1
 USA/NY-PRL-220627_03E23/2022,BA.5.2.1
 USA/WA-UW-22072421196/2022,BA.5.2.1
 Japan/RIMD11833/2022,BA.5.2.1
@@ -2023599,7 +2023566,6 @@ Germany/BW-RKI-I-917832/2022,BA.5.2.1
 USA/TX-CDC-QDX39079113/2022,BA.5.2.1
 Germany/HB-RKI-I-889881/2022,BA.5.2.1
 Denmark/DCGC-535667/2022,BA.5.2.1
-Germany/SL-RKI-I-951430/2022,BA.5.2.1
 USA/TX-HMH-M-108195/2022,BA.5.2.1
 Germany/SN-RKI-I-945658/2022,BA.5.2.1
 Belgium/AZDelta-2228-01421/2022,BA.5.2.1
@@ -2023877,7 +2023843,6 @@ Denmark/DCGC-551363/2022,BA.5.2.1
 Greece/30448/2022,BA.5.2.1
 Italy/LOM_ASSTMonza_669177_20220705110100/2022,BA.5.2.1
 USA/OR-CDC-LC0810635/2022,BA.5.2.1
-Germany/NW-RKI-I-931237/2022,BA.5.2.1
 USA/NY-CDC-QDX37842144/2022,BA.5.2.1
 USA/MD-CDC-LC0769644/2022,BA.5.2.1
 Canada/AB-ABPHL-73787/2022,BA.5.2.1
@@ -2023924,7 +2023889,6 @@ Japan/PG-273806/2022,BA.5.2.1
 USA/CA-CDC-QDX37842509/2022,BA.5.2.1
 USA/CA-CDC-LC0813576/2022,BA.5.2.1
 USA/TX-CDC-STM-2V77ZUCBK/2022,BA.5.2.1
-Slovakia/KE_22_00001493/2022,BA.5.2.1
 USA/CA-CDC-QDX39548828/2022,BA.5.2.1
 Wales/PHWC-PKY613/2022,BA.5.2.1
 USA/CA-CDC-QDX39215821/2022,BA.5.2.1
@@ -2023952,7 +2023916,6 @@ Canada/QC-L00500826001/2022,BA.5.2.1
 USA/MO-CDC-QDX39124046/2022,BA.5.2.1
 Brazil/AM-FIOCRUZ-ILMD2204177/2022,BA.5.2.1
 USA/NE-CDC-QDX38633410/2022,BA.5.2.1
-Denmark/DCGC-565177/2022,BA.5.2.1
 Scotland/LSPA-3F58906/2022,BA.5.2.1
 USA/CA-OC-3427/2022,BA.5.2.1
 USA/CA-HLX-STM-EDD9MJ2YP/2022,BA.5.2.1
@@ -2023995,7 +2023958,6 @@ USA/IL-CDC-QDX39324975/2022,BA.5.2.1
 Belgium/UZA-UA-CV8411192625/2022,BA.5.2.1
 England/PHEC-YYF3KN4/2022,BA.5.2.1
 England/PLYM-3EF236B/2022,BA.5.2.1
-Germany/HH-RKI-I-937733/2022,BA.5.2.1
 USA/CA-HLX-STM-BESDSQ4FB/2022,BF.21
 Germany/TH-RKI-I-887599/2022,BA.5.2.1
 USA/ID-IBL-837847/2022,BA.5.2.1
@@ -2024362,14 +2024324,12 @@ France/CVL-LBZCentre-A300554059/2022,BA.5.2.1
 Wales/LSPA-3F20318/2022,BA.5.2.1
 USA/MD-CDC-QDX38874949/2022,BA.5.2.1
 USA/CA-CDC-LC0797387/2022,BA.5.2.1
-Slovenia/17-062329-CE/2022,BA.5.2.1
 India/AP-SMC_VJA_CCMB-00982/2022,BA.5.2.1
 Brazil/BA-FIOCRUZ-PVM101766/2022,BA.5.2.1
 Denmark/DCGC-545339/2022,BA.5.2.1
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