diff --git a/lineage_notes.txt b/lineage_notes.txt index 129a5dd3..67379910 100644 --- a/lineage_notes.txt +++ b/lineage_notes.txt @@ -1384,6 +1384,7 @@ BQ.1.1.70 Alias of B.1.1.529.5.3.1.1.1.1.1.1.70 Japan, ORF1a:A903V, M:S212G, fro BQ.1.1.71 Alias of B.1.1.529.5.3.1.1.1.1.1.1.71 found in England, from pango-designation issue #1713 EV.1 Alias of B.1.1.529.5.3.1.1.1.1.1.1.71.1 S:Y248H, England BQ.1.1.72 Alias of B.1.1.529.5.3.1.1.1.1.1.1.72 ORF1b:D100A +FC.1 Alias of B.1.1.529.5.3.1.1.1.1.1.1.72.1 S:478R, Indonesia BQ.1.2 Alias of B.1.1.529.5.3.1.1.1.1.1.2, found globally, defined by S:I666V, from issue #1082 BQ.1.2.1 Alias of B.1.1.529.5.3.1.1.1.1.1.2.1 found mainly in Japan, SouthKorea and Mongolia, from pango-designation issue #1392 FB.1 Alias of B.1.1.529.5.3.1.1.1.1.1.2.1.1 S:D253G, Singapore/Taiwan/Japan diff --git a/lineages.csv b/lineages.csv index 4fc64319..d3a8c7f8 100644 --- a/lineages.csv +++ b/lineages.csv @@ -2353469,7 +2353469,6 @@ England/PLYM-327022AE/2023,FB.2 England/PLYM-3270246C/2023,FB.2 England/PLYM-327023AB/2023,FB.2 England/BRBR-326F3DCE/2023,FB.2 -strain,BQ.1.1.72 England/QEUH-325BA2B6/2022,BQ.1.1.72 Sweden/01_SE100_22CS509500/2022,BQ.1.1.72 Germany/BE-RKI-I-1024665/2022,BQ.1.1.72 @@ -2353953,93 +2353952,6 @@ Germany/NW-RKI-I-1096387/2023,BQ.1.1.72 Germany/BW-RKI-I-1101183/2023,BQ.1.1.72 Germany/RP-RKI-I-1087166/2023,BQ.1.1.72 Germany/RP-RKI-I-1087294/2023,BQ.1.1.72 -Indonesia/JK-Undip-NIHRD-WGS-00036/2022,BQ.1.1.72 -Indonesia/JT-Undip-00342/2022,BQ.1.1.72 -Indonesia/JT-Undip-00349/2022,BQ.1.1.72 -Indonesia/JT-Undip-00397/2022,BQ.1.1.72 -Indonesia/JI-ITD-60443NT/2022,BQ.1.1.72 -Indonesia/JK-NIHRD-38136/2022,BQ.1.1.72 -Indonesia/JK-NIHRD-WGS-23-00078/2022,BQ.1.1.72 -Indonesia/JK-CW62-3794/2022,BQ.1.1.72 -Singapore/R6MR133/2023,BQ.1.1.72 -Indonesia/JK-NIHRD-W00597/2023,BQ.1.1.72 -Indonesia/JK-GS-GSILab-1147199/2023,BQ.1.1.72 -Indonesia/JI-ITD-60562NT/2022,BQ.1.1.72 -Indonesia/JI-ITD-60634NT/2023,BQ.1.1.72 -Indonesia/JT-Undip-00393/2022,BQ.1.1.72 -Indonesia/JT-Undip-00350/2022,BQ.1.1.72 -Indonesia/JK-NIHRD-W00683/2023,BQ.1.1.72 -Indonesia/JK-NIHRD-W00645/2023,BQ.1.1.72 -Indonesia/JK-NIHRD-W00688/2023,BQ.1.1.72 -Indonesia/JB-WJHL-ITB-W05177/2022,BQ.1.1.72 -Indonesia/JK-CW62-3849/2023,BQ.1.1.72 -Indonesia/JI-ITD-60550NT/2022,BQ.1.1.72 -Indonesia/JI-ITD-60635NT/2023,BQ.1.1.72 -Indonesia/JK-CW62-3983/2023,BQ.1.1.72 -Indonesia/JK-CW62-3878/2023,BQ.1.1.72 -Indonesia/JT-Undip-00340/2022,BQ.1.1.72 -Indonesia/JT-Undip-00163/2022,BQ.1.1.72 -SouthAfrica/CERI-KRISP-K051863/2023,BQ.1.1.72 -Singapore/R2MR112/2023,BQ.1.1.72 -Indonesia/JK-NIHRD-W00620/2023,BQ.1.1.72 -Indonesia/JK-NIHRD-W00621/2023,BQ.1.1.72 -Indonesia/JK-CW62-3997/2023,BQ.1.1.72 -Indonesia/JK-NIHRD-W00666/2023,BQ.1.1.72 -Indonesia/JB-WJHL-ITB-W05176/2022,BQ.1.1.72 -Indonesia/JB-WJHL-ITB-W05002/2022,BQ.1.1.72 -Indonesia/JK-GS-GSILab-1146709/2023,BQ.1.1.72 -Indonesia/JT-Undip-00339/2022,BQ.1.1.72 -Indonesia/JT-Undip-00396/2022,BQ.1.1.72 -Indonesia/JK-NIHRD-WGS-22-32364/2022,BQ.1.1.72 -Indonesia/JT-Undip-00344/2022,BQ.1.1.72 -Indonesia/JT-Undip-00159/2022,BQ.1.1.72 -Oman/523596/2023,BQ.1.1.72 -England/PHEC-YY87GNW/2023,BQ.1.1.72 -USA/PA-CDC-STM-E5G9KZURY/2022,BQ.1.1.72 -Indonesia/JK-NIHRD-W37501/2022,BQ.1.1.72 -Scotland/QEUH-32647727/2022,BQ.1.1.72 -Scotland/QEUH-326573C6/2022,BQ.1.1.72 -Indonesia/JK-NIHRD-23-00228/2023,BQ.1.1.72 -Indonesia/JK-CW62-3863/2023,BQ.1.1.72 -Indonesia/JK-GS-GSILab-1146658/2023,BQ.1.1.72 -Indonesia/JI-ITD-60556NT/2022,BQ.1.1.72 -Indonesia/JI-ITD-60563NT/2022,BQ.1.1.72 -Indonesia/JI-ITD-60241NT/2022,BQ.1.1.72 -Indonesia/JI-ITD-60124NT/2022,BQ.1.1.72 -Indonesia/JK-CW62-3926/2023,BQ.1.1.72 -Indonesia/JK-CW62-3775/2022,BQ.1.1.72 -Indonesia/JI-ITD-60694NT/2023,BQ.1.1.72 -Indonesia/JI-ITD-60690NT/2023,BQ.1.1.72 -Singapore/R6MR28/2023,BQ.1.1.72 -Indonesia/JI-ITD-60583N/2022,BQ.1.1.72 -Indonesia/JI-ITD-60582N/2022,BQ.1.1.72 -Indonesia/JK-NIHRD-WGS-22-37022/2022,BQ.1.1.72 -Indonesia/JB-NIHRD-37343/2022,BQ.1.1.72 -Indonesia/JK-NIHRD-C00009/2023,BQ.1.1.72 -Indonesia/JK-NIHRD-C00008/2023,BQ.1.1.72 -Indonesia/JK-CW62-3996/2023,BQ.1.1.72 -Indonesia/JK-NIHRD-W00636/2023,BQ.1.1.72 -Indonesia/JK-NIHRD-W00617/2023,BQ.1.1.72 -Indonesia/JK-NIHRD-22-37624/2022,BQ.1.1.72 -Indonesia/JK-CW62-3796/2023,BQ.1.1.72 -Indonesia/JK-NIHRD-W00436/2023,BQ.1.1.72 -Indonesia/JK-CW62-3658/2022,BQ.1.1.72 -Indonesia/JT-Labkes-22-356OD/2022,BQ.1.1.72 -BHR/850704081/2023,BQ.1.1.72 -Indonesia/JK-GS-GSILab-1145255/2023,BQ.1.1.72 -Indonesia/JT-Undip-00345/2022,BQ.1.1.72 -Indonesia/JT-Undip-00110/2022,BQ.1.1.72 -Indonesia/JT-Undip-WGS-00236/2022,BQ.1.1.72 -Indonesia/JT-Undip-WGS-00235/2022,BQ.1.1.72 -Indonesia/JT-Undip-00392/2022,BQ.1.1.72 -Indonesia/JT-Undip-WGS-00238/2022,BQ.1.1.72 -Indonesia/JT-Undip-00398/2022,BQ.1.1.72 -Indonesia/JK-NIHRD-22-37717/2022,BQ.1.1.72 -Indonesia/JK-GS-GSILab-1148443-0/2023,BQ.1.1.72 -SouthKorea/KDCA205900/2023,BQ.1.1.72 -Indonesia/JK-CW62-3711/2022,BQ.1.1.72 -Indonesia/JI-ITD-60320NT/2022,BQ.1.1.72 -Indonesia/JK-NIHRD-ITB-N1909/2022,BQ.1.1.72 France/CVL-IPP53957/2022,BQ.1.1.72 France/CVL-IPP53959/2022,BQ.1.1.72 France/HDF-IPP01140/2023,BQ.1.1.72 @@ -2354176,3 +2354088,91 @@ Peru/CUS-INS-41046/2022,BQ.1.1.72 Peru/LIM-INS-40618/2022,BQ.1.1.72 Peru/PUN-INS-37981/2022,BQ.1.1.72 Peru/PUN-INS-37980/2022,BQ.1.1.72 +strain,FC.1 +Indonesia/JK-Undip-NIHRD-WGS-00036/2022,FC.1 +Indonesia/JT-Undip-00342/2022,FC.1 +Indonesia/JT-Undip-00349/2022,FC.1 +Indonesia/JT-Undip-00397/2022,FC.1 +Indonesia/JI-ITD-60443NT/2022,FC.1 +Indonesia/JK-NIHRD-38136/2022,FC.1 +Indonesia/JK-NIHRD-WGS-23-00078/2022,FC.1 +Indonesia/JK-CW62-3794/2022,FC.1 +Singapore/R6MR133/2023,FC.1 +Indonesia/JK-NIHRD-W00597/2023,FC.1 +Indonesia/JK-GS-GSILab-1147199/2023,FC.1 +Indonesia/JI-ITD-60562NT/2022,FC.1 +Indonesia/JI-ITD-60634NT/2023,FC.1 +Indonesia/JT-Undip-00393/2022,FC.1 +Indonesia/JT-Undip-00350/2022,FC.1 +Indonesia/JK-NIHRD-W00683/2023,FC.1 +Indonesia/JK-NIHRD-W00645/2023,FC.1 +Indonesia/JK-NIHRD-W00688/2023,FC.1 +Indonesia/JB-WJHL-ITB-W05177/2022,FC.1 +Indonesia/JK-CW62-3849/2023,FC.1 +Indonesia/JI-ITD-60550NT/2022,FC.1 +Indonesia/JI-ITD-60635NT/2023,FC.1 +Indonesia/JK-CW62-3983/2023,FC.1 +Indonesia/JK-CW62-3878/2023,FC.1 +Indonesia/JT-Undip-00340/2022,FC.1 +Indonesia/JT-Undip-00163/2022,FC.1 +SouthAfrica/CERI-KRISP-K051863/2023,FC.1 +Singapore/R2MR112/2023,FC.1 +Indonesia/JK-NIHRD-W00620/2023,FC.1 +Indonesia/JK-NIHRD-W00621/2023,FC.1 +Indonesia/JK-CW62-3997/2023,FC.1 +Indonesia/JK-NIHRD-W00666/2023,FC.1 +Indonesia/JB-WJHL-ITB-W05176/2022,FC.1 +Indonesia/JB-WJHL-ITB-W05002/2022,FC.1 +Indonesia/JK-GS-GSILab-1146709/2023,FC.1 +Indonesia/JT-Undip-00339/2022,FC.1 +Indonesia/JT-Undip-00396/2022,FC.1 +Indonesia/JK-NIHRD-WGS-22-32364/2022,FC.1 +Indonesia/JT-Undip-00344/2022,FC.1 +Indonesia/JT-Undip-00159/2022,FC.1 +Oman/523596/2023,FC.1 +England/PHEC-YY87GNW/2023,FC.1 +USA/PA-CDC-STM-E5G9KZURY/2022,FC.1 +Indonesia/JK-NIHRD-W37501/2022,FC.1 +Scotland/QEUH-32647727/2022,FC.1 +Scotland/QEUH-326573C6/2022,FC.1 +Indonesia/JK-NIHRD-23-00228/2023,FC.1 +Indonesia/JK-CW62-3863/2023,FC.1 +Indonesia/JK-GS-GSILab-1146658/2023,FC.1 +Indonesia/JI-ITD-60556NT/2022,FC.1 +Indonesia/JI-ITD-60563NT/2022,FC.1 +Indonesia/JI-ITD-60241NT/2022,FC.1 +Indonesia/JI-ITD-60124NT/2022,FC.1 +Indonesia/JK-CW62-3926/2023,FC.1 +Indonesia/JK-CW62-3775/2022,FC.1 +Indonesia/JI-ITD-60694NT/2023,FC.1 +Indonesia/JI-ITD-60690NT/2023,FC.1 +Singapore/R6MR28/2023,FC.1 +Indonesia/JI-ITD-60583N/2022,FC.1 +Indonesia/JI-ITD-60582N/2022,FC.1 +Indonesia/JK-NIHRD-WGS-22-37022/2022,FC.1 +Indonesia/JB-NIHRD-37343/2022,FC.1 +Indonesia/JK-NIHRD-C00009/2023,FC.1 +Indonesia/JK-NIHRD-C00008/2023,FC.1 +Indonesia/JK-CW62-3996/2023,FC.1 +Indonesia/JK-NIHRD-W00636/2023,FC.1 +Indonesia/JK-NIHRD-W00617/2023,FC.1 +Indonesia/JK-NIHRD-22-37624/2022,FC.1 +Indonesia/JK-CW62-3796/2023,FC.1 +Indonesia/JK-NIHRD-W00436/2023,FC.1 +Indonesia/JK-CW62-3658/2022,FC.1 +Indonesia/JT-Labkes-22-356OD/2022,FC.1 +BHR/850704081/2023,FC.1 +Indonesia/JK-GS-GSILab-1145255/2023,FC.1 +Indonesia/JT-Undip-00345/2022,FC.1 +Indonesia/JT-Undip-00110/2022,FC.1 +Indonesia/JT-Undip-WGS-00236/2022,FC.1 +Indonesia/JT-Undip-WGS-00235/2022,FC.1 +Indonesia/JT-Undip-00392/2022,FC.1 +Indonesia/JT-Undip-WGS-00238/2022,FC.1 +Indonesia/JT-Undip-00398/2022,FC.1 +Indonesia/JK-NIHRD-22-37717/2022,FC.1 +Indonesia/JK-GS-GSILab-1148443-0/2023,FC.1 +SouthKorea/KDCA205900/2023,FC.1 +Indonesia/JK-CW62-3711/2022,FC.1 +Indonesia/JI-ITD-60320NT/2022,FC.1 +Indonesia/JK-NIHRD-ITB-N1909/2022,FC.1 diff --git a/pango_designation/alias_key.json b/pango_designation/alias_key.json index 0a7f7880..42dcdf82 100644 --- a/pango_designation/alias_key.json +++ b/pango_designation/alias_key.json @@ -133,6 +133,7 @@ "EZ": "B.1.1.529.5.3.1.1.1.1.1.1.43", "FA": "B.1.1.529.5.3.1.1.1.1.1.1.10", "FB": "B.1.1.529.5.3.1.1.1.1.1.2.1", + "FC": "B.1.1.529.5.3.1.1.1.1.1.1.72", "XA": ["B.1.1.7","B.1.177"], "XB": ["B.1.634","B.1.631"], "XC": ["AY.29","B.1.1.7"],