diff --git a/lineage_notes.txt b/lineage_notes.txt index 7171602b..2ec1f351 100644 --- a/lineage_notes.txt +++ b/lineage_notes.txt @@ -716,6 +716,7 @@ BA.4.1 Alias of B.1.1.529.4.1, mainly found in South Africa, from pango-designat BA.5 Alias of B.1.1.529.5, from pango-designation issue #517 BA.5.1 Alias of B.1.1.529.5.1, Portugal lineage BA.5.2 Alias of B.1.1.529.5.2, mainly found in South Africa, England and USA, from pango-designation issue #551 +BA.5.2.1 Alias of B.1.1.529.5.2.1, mainly found in South Africa, England and USA, from pango-designation issue #657 BA.5.3 Alias of B.1.1.529.5.3, mainly found in Germany and South Africa, from pango-designation issue #550 BA.5.3.1 Alias of B.1.1.529.5.3.1, mainly found in South Africa, Austria, and England, from pango-designation issue #625 BA.5.4 Alias of B.1.1.529.5.4, mainly found in England, Denmark, Spain and Scotland, from pango-designation issue #618 diff --git a/lineages.csv b/lineages.csv index 87a5ebb6..0fa6aebe 100644 --- a/lineages.csv +++ b/lineages.csv @@ -1576213,7 +1576213,7 @@ South_Africa/SU-NHLS_4435/2022,BA.5 South_Africa/SU-NHLS_4473/2022,BA.5 South_Africa/SU-NHLS_4487/2022,BA.5 Germany/BY-RKI-I-689929/2022,BA.5.3 -France/CVL-IPP25260/2022,BA.5.2 +France/CVL-IPP25260/2022,BA.5.2.1 South_Africa/NCV1101/2022,BA.5 South_Africa/CERI-KRISP-K039363/2022,BA.5 South_Africa/CERI-KRISP-K039369/2022,BA.5 @@ -1576258,7 +1576258,7 @@ Portugal/PT32092/2022,BA.5.1 Portugal/PT32100/2022,BA.5.1 Portugal/PT32115/2022,BA.5.1 Portugal/PT32098/2022,BA.5.1 -England/LSPA-3D62DC3/2022,BA.5.4 +England/LSPA-3D62DC3/2022,BA.5.2.1 England/PHEC-YYRXN48/2022,BA.5 Germany/BY-RKI-I-718794/2022,BA.5.3 Germany/BY-RKI-I-722251/2022,BA.5.3 @@ -1576268,9 +1576268,9 @@ Germany/BW-RKI-I-725741/2022,BA.5.3 France/ARA-HCL722002171201/2022,BA.5.1 Scotland/QEUH-3D68228/2022,BA.5 Scotland/QEUH-3D70F35/2022,BA.5.3 -England/LSPA-3D7413B/2022,BA.5.2 +England/LSPA-3D7413B/2022,BA.5.2.1 USA/NC-CORVASEQ-UNC-5734/2022,BA.5 -England/LSPA-3D77587/2022,BA.5.2 +England/LSPA-3D77587/2022,BA.5.2.1 South_Africa/CERI-KRISP-K037619/2022,BA.5 Denmark/DCGC-468314/2022,BA.4.1 South_Africa/NICD-N37590/2022,BA.4 @@ -1704146,44 +1704146,44 @@ Denmark/DCGC-424983/2022,XV Denmark/DCGC-471812/2022,XV Denmark/DCGC-472694/2022,XV Denmark/DCGC-388378/2022,XV -Denmark/DCGC-504320/2022,BA.5.4 +Denmark/DCGC-504320/2022,BA.5.2.1 Germany/BY-RKI-I-763423/2022,BA.5.3 -England/LSPA-3DE89FE/2022,BA.5.2 -Israel/ICH-741221265/2022,BA.5.2 -Australia/NSW-ICPMR-24753/2022,BA.5.2 +England/LSPA-3DE89FE/2022,BA.5.2.1 +Israel/ICH-741221265/2022,BA.5.2.1 +Australia/NSW-ICPMR-24753/2022,BA.5.2.1 Germany/NW-HHU-24503/2022,BA.5.3 -Scotland/QEUH-3D94F86/2022,BA.5.2 +Scotland/QEUH-3D94F86/2022,BA.5.2.1 Germany/BY-RKI-I-703781/2022,BA.5.3 Germany/BW-RKI-I-773308/2022,BA.5.3 Austria/LB-R00071-S318/2022,BA.5 -England/LSPA-3DD651D/2022,BA.5.2 +England/LSPA-3DD651D/2022,BA.5.2.1 England/QEUH-3D98DC4/2022,BE.1 -England/LSPA-3DB18F1/2022,BA.5.4 +England/LSPA-3DB18F1/2022,BA.5.2.1 Belgium/ULB-IBC_CV8498724718/2022,BA.5.3 Germany/BY-RKI-I-766761/2022,BA.5.3 -England/LSPA-3DD68BA/2022,BA.5.2 +England/LSPA-3DD68BA/2022,BA.5.2.1 Germany/BY-RKI-I-772272/2022,BA.5.3 Germany/BY-RKI-I-734515/2022,BA.5.3 -Scotland/QEUH-3DD7C44/2022,BA.5.4 +Scotland/QEUH-3DD7C44/2022,BA.5.2.1 Germany/BY-LGL-579e21f3-4502-43fc-9104-a483d15e2045/2022,BA.5.3 Germany/BY-RKI-I-766645/2022,BA.5.3 -Denmark/DCGC-507282/2022,BA.5.4 -England/LSPA-3DD1D74/2022,BA.5.2 +Denmark/DCGC-507282/2022,BA.5.2.1 +England/LSPA-3DD1D74/2022,BA.5.2.1 Germany/BW-RKI-I-776385/2022,BA.5.3 USA/NY-NYULH6629/2022,BA.5.3 -Canada/UN-410325/2022,BA.5.4 -Scotland/QEUH-3DCCB54/2022,BA.5.2 -England/LSPA-3DCC529/2022,BA.5.2 +Canada/UN-410325/2022,BA.5.2.1 +Scotland/QEUH-3DCCB54/2022,BA.5.2.1 +England/LSPA-3DCC529/2022,BA.5.2.1 USA/CA-CDC-STM-SS4FHRNC8/2022,BA.5.3.1 Germany/BY-MVP-000014416/2022,BA.5.3 Germany/BY-LGL-IMS-10272-CVDP-0e3754a2-7008-4aaf-931f-fc64691ee259/2022,BA.5.3 Germany/BY-RKI-I-742300/2022,BA.5.3 USA/IL-S22WGS1531/2022,BA.5 Germany/BW-RKI-I-748187/2022,BA.5.3 -Denmark/DCGC-488222/2022,BA.5.4 -Austria/LB-R00071-S157/2022,BA.5.4 +Denmark/DCGC-488222/2022,BA.5.2.1 +Austria/LB-R00071-S157/2022,BA.5.2.1 USA/AR-CDC-QDX35974863/2022,BA.5.2 -Spain/AS-242296438/2022,BA.5.4 +Spain/AS-242296438/2022,BA.5.2.1 Denmark/DCGC-507674/2022,BE.1 Iceland/E4199/2022,BA.5.3 Scotland/QEUH-3DD29BB/2022,BE.1 @@ -1704193,15 +1704193,15 @@ Germany/NW-RKI-I-757462/2022,BA.5.3 Austria/LB-R00072-S317/2022,BA.5.3 Germany/BY-MVP-000014272/2022,BA.5.3 Germany/BW-RKI-I-775362/2022,BA.5 -England/LSPA-3DE2FD4/2022,BA.5.2 -Scotland/QEUH-3DE49B6/2022,BA.5.4 +England/LSPA-3DE2FD4/2022,BA.5.2.1 +Scotland/QEUH-3DE49B6/2022,BA.5.2.1 Scotland/QEUH-3DD5F3E/2022,BE.1 Germany/BY-RKI-I-762912/2022,BA.5.3 Germany/BY-RKI-I-763072/2022,BA.5.3 Germany/SH-RKI-I-764732/2022,BA.5.3 -England/LSPA-3D9CC3C/2022,BA.5.2 +England/LSPA-3D9CC3C/2022,BA.5.2.1 Germany/BY-RKI-I-758605/2022,BA.5.3 -Spain/AS-242298052/2022,BA.5.4 +Spain/AS-242298052/2022,BA.5.2.1 Germany/SN-RKI-I-749973/2022,BA.5.3 Germany/BW-RKI-I-691621/2022,BA.5.3 Germany/BY-RKI-I-749528/2022,BA.5.3 @@ -1704215,12 +1704215,12 @@ Germany/BY-RKI-I-744654/2022,BA.5.3 Germany/NW-RKI-I-749775/2022,BA.5.3 Germany/BW-RKI-I-746324/2022,BA.5.3 Scotland/QEUH-3DE339B/2022,BA.5 -Scotland/QEUH-3DDFDEF/2022,BA.5.2 +Scotland/QEUH-3DDFDEF/2022,BA.5.2.1 Germany/BY-RKI-I-742301/2022,BA.5.3 Germany/BY-RKI-I-734517/2022,BA.5.3 -England/LSPA-3DE32CB/2022,BA.5.2 -England/LSPA-3DE2FA7/2022,BA.5.2 -Scotland/QEUH-3DD7AD1/2022,BA.5.4 +England/LSPA-3DE32CB/2022,BA.5.2.1 +England/LSPA-3DE2FA7/2022,BA.5.2.1 +Scotland/QEUH-3DD7AD1/2022,BA.5.2.1 Austria/LB-R00071-S151/2022,BA.5.3 Germany/BY-LGL-99df7794-5c86-4485-8f5c-9391ea869373/2022,BA.5.3 Austria/LB-R00068-S348/2022,BA.5.3 @@ -1704232,36 +1704232,35 @@ Germany/BW-RKI-I-691649/2022,BA.5.3 Germany/BY-RKI-I-749477/2022,BA.5.3 Germany/NW-RKI-I-769777/2022,BA.5.3 Germany/BY-LGL-732021c9-1171-44ad-9781-4bacae56f6e7/2022,BA.5.3 -Norway/OUS-24362/2022,BA.5.4 -Denmark/DCGC-505371/2022,BA.5.4 +Norway/OUS-24362/2022,BA.5.2.1 +Denmark/DCGC-505371/2022,BA.5.2.1 Germany/NW-RKI-I-748637/2022,BA.5.3 Denmark/DCGC-505507/2022,BA.5.3 Australia/NSW-ICPMR-24634/2022,BA.5 -Austria/LB-R00071-S172/2022,BA.5.4 -Austria/LB-R00071-S004/2022,BA.5.4 +Austria/LB-R00071-S172/2022,BA.5.2.1 +Austria/LB-R00071-S004/2022,BA.5.2.1 Germany/BY-MVP-000014256/2022,BA.5.3 Belgium/UMONS-P062781501/2022,BA.5.3.1 -Spain/AS-242298417/2022,BA.5.4 Germany/BY-RKI-I-773215/2022,BA.5.3 Australia/SA233153/2022,BA.5.3.1 Germany/BY-RKI-I-772299/2022,BA.5.3 Germany/BW-RKI-I-760790/2022,BA.5.3 -Germany/BY-MVP-000014300/2022,BA.5.2 +Germany/BY-MVP-000014300/2022,BA.5.2.1 Germany/BY-RKI-I-763455/2022,BA.5.3 USA/LA-OD-8760642168/2022,BA.5.3 Denmark/DCGC-496559/2022,BA.5.3 -Denmark/DCGC-497993/2022,BA.5.4 +Denmark/DCGC-497993/2022,BA.5.2.1 Germany/HH-RKI-I-747029/2022,BA.5.3 Germany/BY-RKI-I-720010/2022,BA.5.3 -England/QEUH-3DC55E4/2022,BA.5.4 +England/QEUH-3DC55E4/2022,BA.5.2.1 Germany/BY-RKI-I-742304/2022,BA.5.3 Germany/BY-RKI-I-772297/2022,BA.5.3 -Scotland/QEUH-3D9302A/2022,BA.5.2 +Scotland/QEUH-3D9302A/2022,BA.5.2.1 Netherlands/NH-inBiome-211595/2022,BA.5.2 -England/LSPA-3DE885B/2022,BA.5.2 +England/LSPA-3DE885B/2022,BA.5.2.1 Austria/LB-R00072-S347/2022,BA.5.3 Germany/BW-RKI-I-746271/2022,BA.5.3 -England/PHEP-YYR5XQ4/2022,BA.5.4 +England/PHEP-YYR5XQ4/2022,BA.5.2.1 USA/LA-OD-8217994147/2022,BA.5.3 Germany/NW-RKI-I-739643/2022,BA.5.3 Germany/BY-RKI-I-754906/2022,BA.5.3 @@ -1704269,58 +1704268,58 @@ Germany/BY-RKI-I-758565/2022,BA.5.3 Germany/SH-RKI-I-765815/2022,BA.5.3 Germany/HE-RKI-I-765642/2022,BA.5.3 Germany/SN-RKI-I-773915/2022,BA.5.3 -England/LSPA-3DE31CE/2022,BA.5.2 -England/LSPA-3DD6498/2022,BA.5.4 +England/LSPA-3DE31CE/2022,BA.5.2.1 +England/LSPA-3DD6498/2022,BA.5.2.1 Germany/SH-RKI-I-762604/2022,BA.5.3 Germany/BY-RKI-I-772303/2022,BA.5.3 Germany/BY-RKI-I-774987/2022,BA.5.3 Germany/BE-ChVir-LB-220422-4635/2022,BA.5.3 Germany/BY-RKI-I-772285/2022,BA.5.3 -Belgium/ZNA_25376252/2022,BA.5.2 +Belgium/ZNA_25376252/2022,BA.5.2.1 Germany/SH-RKI-I-762730/2022,BA.5.3 Germany/BY-RKI-I-719988/2022,BA.5.3 -England/LSPA-3DC31B5/2022,BA.5.4 +England/LSPA-3DC31B5/2022,BA.5.2.1 Germany/BW-RKI-I-732270/2022,BA.5.3 England/LSPA-3DA46BB/2022,BA.5 Germany/HH-RKI-I-769160/2022,BA.5.3 -Scotland/QEUH-3DE677E/2022,BA.5.4 +Scotland/QEUH-3DE677E/2022,BA.5.2.1 Germany/BW-RKI-I-701999/2022,BA.5.3 USA/MS-MSPHL-0854/2022,BA.5 Germany/NW-RKI-I-748952/2022,BA.5.3 -England/LSPA-3DC1269/2022,BA.5.2 -Scotland/QEUH-3DC0D2D/2022,BA.5.2 +England/LSPA-3DC1269/2022,BA.5.2.1 +Scotland/QEUH-3DC0D2D/2022,BA.5.2.1 Germany/BY-MVP-000014258/2022,BA.5.3 Germany/BY-RKI-I-772307/2022,BA.5.3 -England/LSPA-3D9D451/2022,BA.5.2 +England/LSPA-3D9D451/2022,BA.5.2.1 Germany/BW-RKI-I-740433/2022,BA.5.3 Germany/BY-MVP-000014262/2022,BA.5.3 Germany/BB-ChVir-LB-220429-4137/2022,BA.5.3 -Scotland/QEUH-3D85AF0/2022,BA.5.4 +Scotland/QEUH-3D85AF0/2022,BA.5.2.1 Germany/BY-RKI-I-718431/2022,BA.5.3 Germany/BY-MVP-000014274/2022,BA.5.3 -England/LSPA-3DD60B2/2022,BA.5.4 +England/LSPA-3DD60B2/2022,BA.5.2.1 Germany/TH-RKI-I-749308/2022,BA.5.3 England/LSPA-3DD2E52/2022,BA.5.2 Germany/BW-RKI-I-697198/2022,BA.5.3 Germany/BY-RKI-I-773219/2022,BA.5.3 USA/MA-CDC-QDX35975980/2022,BA.5 Iceland/E4457/2022,BA.5.3 -Austria/LB-R00071-S311/2022,BA.5.4 +Austria/LB-R00071-S311/2022,BA.5.2.1 Germany/BY-RKI-I-748598/2022,BA.5.3 Germany/BY-RKI-I-733488/2022,BA.5.3 -England/LSPA-3DD6A3C/2022,BA.5.2 -England/LSPA-3DD1D47/2022,BA.5.2 -Spain/AS-242298221/2022,BA.5.4 +England/LSPA-3DD6A3C/2022,BA.5.2.1 +England/LSPA-3DD1D47/2022,BA.5.2.1 +Spain/AS-242298221/2022,BA.5.2.1 Germany/BY-RKI-I-772290/2022,BA.5.3 -Denmark/DCGC-495935/2022,BA.5.4 +Denmark/DCGC-495935/2022,BA.5.2.1 USA/NC-CDC-QDX36017791/2022,BA.5 USA/LA-OD-4720469941/2022,BA.5.3 -Spain/AS-242298415/2022,BA.5.4 -Iceland/E4746/2022,BA.5.2 +Spain/AS-242298415/2022,BA.5.2.1 +Iceland/E4746/2022,BA.5.2.1 Germany/BW-RKI-I-760811/2022,BA.5.3 -Spain/CT-HUGTiPM091TE4E8/2022,BA.5.2 +Spain/CT-HUGTiPM091TE4E8/2022,BA.5.2.1 Germany/BW-RKI-I-740264/2022,BA.5.3 -USA/NE-NPHL22-14947/2022,BA.5.2 +USA/NE-NPHL22-14947/2022,BA.5.2.1 Iceland/E4292/2022,BA.5.3 Germany/BY-RKI-I-765006/2022,BA.5.3 South_Africa/NICD-N38900/2022,BA.5.1 @@ -1705832,9 +1705831,9 @@ Denmark/DCGC-491338/2022,BA.2.45 Sweden/01_SE100_22CS502279/2022,BA.2.45 Sweden/01_SE100_22CS102442/2022,BA.2.45 Sweden/01_SE100_22CS504877/2022,BA.2.45 -Denmark/DCGC-504788/2022,BA.5.4 -England/QEUH-3DAAA5F/2022,BA.5.4 -England/LSPA-3DD65FF/2022,BA.5.2 +Denmark/DCGC-504788/2022,BA.5.2.1 +England/QEUH-3DAAA5F/2022,BA.5.2.1 +England/LSPA-3DD65FF/2022,BA.5.2.1 Germany/BY-RKI-I-720040/2022,BA.5.3 Germany/BY-RKI-I-720047/2022,BA.5.3 Germany/HH-RKI-I-769393/2022,BA.5.3 @@ -1706107,70 +1706106,70 @@ USA/FL-CDC-STM-JTPZYVSAE/2022,BA.2.3.5 England/LSPA-3B2E68E/2022,BA.2.3.5 England/ALDP-37A2FB8/2022,BA.2.3.5 England/LSPA-396369E/2022,BA.2.3.5 -Denmark/DCGC-515618/2022,BA.5.4 -USA/NY-PRL-220516_04J07/2022,BA.5.4 -Denmark/DCGC-514062/2022,BA.5.4 -Denmark/DCGC-509345/2022,BA.5.4 -England/LSPA-3DEFDFB/2022,BA.5.4 -USA/CA-LACPHL-AF09571/2022,BA.5.4 -Austria/LB-R00076-S356/2022,BA.5.4 -Denmark/DCGC-511309/2022,BA.5.4 -Scotland/QEUH-3DF3231/2022,BA.5.4 -England/QEUH-3E16E06/2022,BA.5.4 -England/LSPA-3E16334/2022,BA.5.4 -Spain/CT-HUGTiPM094SS7H6/2022,BA.5.4 -Spain/AS-242298417b/2022,BA.5.4 -England/PHEC-YYFBK61/2022,BA.5.4 -USA/NY-PRL-0429_02A09/2022,BA.5.4 -Denmark/DCGC-510754/2022,BA.5.4 -Spain/AS-252201013/2022,BA.5.4 -Denmark/DCGC-517247/2022,BA.5.4 -England/LSPA-3DF84CD/2022,BA.5.4 -Spain/AS-252200194/2022,BA.5.4 -USA/NY-PRL-220516_02H16/2022,BA.5.4 -Scotland/QEUH-3DF08AB/2022,BA.5.4 -England/QEUH-3DFCB3D/2022,BA.5.4 -England/PHEP-YYR6431/2022,BA.5.4 -Spain/CT-HUGTiPM093CN1H6/2022,BA.5.4 -Scotland/QEUH-3DF51F6/2022,BA.5.4 -Spain/AS-252201029/2022,BA.5.4 -England/LSPA-3DFE1FD/2022,BA.5.4 -USA/NY-PRL-220516_04C09/2022,BA.5.4 -England/LSPA-3E149E9/2022,BA.5.4 -England/LSPA-3E19708/2022,BA.5.4 -England/LSPA-3E0C44D/2022,BA.5.4 -Denmark/DCGC-516274/2022,BA.5.4 -Scotland/QEUH-3DEB964/2022,BA.5.4 -England/LSPA-3DF1D41/2022,BA.5.4 -Spain/AS-242296438b/2022,BA.5.4 -England/QEUH-3E11B04/2022,BA.5.4 -Denmark/DCGC-513791/2022,BA.5.4 -Scotland/QEUH-3DF567F/2022,BA.5.4 -Spain/IB-HUSE-05169/2022,BA.5.4 -Denmark/DCGC-517351/2022,BA.5.4 -USA/NY-PRL-220518_00G24/2022,BA.5.4 -Denmark/DCGC-510780/2022,BA.5.4 -England/LSPA-3DFBD0B/2022,BA.5.4 -Spain/AS-252201004/2022,BA.5.4 -Spain/IB-HUSE-05242/2022,BA.5.4 -Denmark/DCGC-513054/2022,BA.5.4 -Scotland/QEUH-3DF5B8F/2022,BA.5.4 -Denmark/DCGC-515381/2022,BA.5.4 -Denmark/DCGC-516789/2022,BA.5.4 -USA/NY-PRL-220513_03J10/2022,BA.5.4 -Scotland/QEUH-3DF4151/2022,BA.5.4 -Denmark/DCGC-510839/2022,BA.5.4 -England/LSPA-3E0BB58/2022,BA.5.4 -England/LSPA-3E0034C/2022,BA.5.4 -Spain/AS-242299606/2022,BA.5.4 -Spain/AS-252200472/2022,BA.5.4 -Scotland/QEUH-3DF57E5/2022,BA.5.4 -Denmark/DCGC-512520/2022,BA.5.4 -England/LSPA-3E181ED/2022,BA.5.4 -England/LSPA-3E1C90F/2022,BA.5.4 -USA/WA-CDC-UW22051225525/2022,BA.5.4 -Scotland/LSPA-3E0FC06/2022,BA.5.4 -England/LSPA-3E0C2DA/2022,BA.5.4 +Denmark/DCGC-515618/2022,BA.5.2.1 +USA/NY-PRL-220516_04J07/2022,BA.5.2.1 +Denmark/DCGC-514062/2022,BA.5.2.1 +Denmark/DCGC-509345/2022,BA.5.2.1 +England/LSPA-3DEFDFB/2022,BA.5.2.1 +USA/CA-LACPHL-AF09571/2022,BA.5.2.1 +Austria/LB-R00076-S356/2022,BA.5.2.1 +Denmark/DCGC-511309/2022,BA.5.2.1 +Scotland/QEUH-3DF3231/2022,BA.5.2.1 +England/QEUH-3E16E06/2022,BA.5.2.1 +England/LSPA-3E16334/2022,BA.5.2.1 +Spain/CT-HUGTiPM094SS7H6/2022,BA.5.2.1 +Spain/AS-242298417b/2022,BA.5.2.1 +England/PHEC-YYFBK61/2022,BA.5.2.1 +USA/NY-PRL-0429_02A09/2022,BA.5.2.1 +Denmark/DCGC-510754/2022,BA.5.2.1 +Spain/AS-252201013/2022,BA.5.2.1 +Denmark/DCGC-517247/2022,BA.5.2.1 +England/LSPA-3DF84CD/2022,BA.5.2.1 +Spain/AS-252200194/2022,BA.5.2.1 +USA/NY-PRL-220516_02H16/2022,BA.5.2.1 +Scotland/QEUH-3DF08AB/2022,BA.5.2.1 +England/QEUH-3DFCB3D/2022,BA.5.2.1 +England/PHEP-YYR6431/2022,BA.5.2.1 +Spain/CT-HUGTiPM093CN1H6/2022,BA.5.2.1 +Scotland/QEUH-3DF51F6/2022,BA.5.2.1 +Spain/AS-252201029/2022,BA.5.2.1 +England/LSPA-3DFE1FD/2022,BA.5.2.1 +USA/NY-PRL-220516_04C09/2022,BA.5.2.1 +England/LSPA-3E149E9/2022,BA.5.2.1 +England/LSPA-3E19708/2022,BA.5.2.1 +England/LSPA-3E0C44D/2022,BA.5.2.1 +Denmark/DCGC-516274/2022,BA.5.2.1 +Scotland/QEUH-3DEB964/2022,BA.5.2.1 +England/LSPA-3DF1D41/2022,BA.5.2.1 +Spain/AS-242296438b/2022,BA.5.2.1 +England/QEUH-3E11B04/2022,BA.5.2.1 +Denmark/DCGC-513791/2022,BA.5.2.1 +Scotland/QEUH-3DF567F/2022,BA.5.2.1 +Spain/IB-HUSE-05169/2022,BA.5.2.1 +Denmark/DCGC-517351/2022,BA.5.2.1 +USA/NY-PRL-220518_00G24/2022,BA.5.2.1 +Denmark/DCGC-510780/2022,BA.5.2.1 +England/LSPA-3DFBD0B/2022,BA.5.2.1 +Spain/AS-252201004/2022,BA.5.2.1 +Spain/IB-HUSE-05242/2022,BA.5.2.1 +Denmark/DCGC-513054/2022,BA.5.2.1 +Scotland/QEUH-3DF5B8F/2022,BA.5.2.1 +Denmark/DCGC-515381/2022,BA.5.2.1 +Denmark/DCGC-516789/2022,BA.5.2.1 +USA/NY-PRL-220513_03J10/2022,BA.5.2.1 +Scotland/QEUH-3DF4151/2022,BA.5.2.1 +Denmark/DCGC-510839/2022,BA.5.2.1 +England/LSPA-3E0BB58/2022,BA.5.2.1 +England/LSPA-3E0034C/2022,BA.5.2.1 +Spain/AS-242299606/2022,BA.5.2.1 +Spain/AS-252200472/2022,BA.5.2.1 +Scotland/QEUH-3DF57E5/2022,BA.5.2.1 +Denmark/DCGC-512520/2022,BA.5.2.1 +England/LSPA-3E181ED/2022,BA.5.2.1 +England/LSPA-3E1C90F/2022,BA.5.2.1 +USA/WA-CDC-UW22051225525/2022,BA.5.2.1 +Scotland/LSPA-3E0FC06/2022,BA.5.2.1 +England/LSPA-3E0C2DA/2022,BA.5.2.1 Austria/LB-R00073-S215/2022,BE.1 Austria/LB-R00073-S248/2022,BE.1 Belgium/UZA-UA-CV8364533096/2022,BA.5.3.1 @@ -1708858,3 +1708857,204 @@ Scotland/QEUH-3DBAF8A/2022,BA.2.48 USA/MA-Broad-CRSP_UVVF5IZUXG5ACTSF/2022,BA.2.48 USA/NY-PRL_0422_00K11/2022,BA.2.48 USA/NY-CDC-QDX35823742/2022,BA.2.48 +Spain/CT-HUGTiPM094SS7B6/2022,BA.5.2.1 +Brazil/RJ-FIOCRUZ-9816/2022,BA.5.2.1 +USA/NE-NPHL22-15351/2022,BA.5.2.1 +Austria/LB-R00076-S314/2022,BA.5.2.1 +Belgium/ULB-IBC_CV8429525726/2022,BA.5.2.1 +Germany/BY-RKI-I-788337/2022,BA.5.2.1 +USA/AL-CDC-LC0603676/2022,BA.5.2.1 +Germany/NW-RKI-I-799184/2022,BA.5.2.1 +England/LSPA-3E02034/2022,BA.5.2.1 +Denmark/DCGC-517155/2022,BA.5.2.1 +Israel/SMC-7068480/2022,BA.5.2.1 +Germany/BY-RKI-I-817383/2022,BA.5.2.1 +England/QEUH-3E1698D/2022,BA.5.2.1 +USA/NY-PRL-220518_00A19/2022,BA.5.2.1 +England/LSPA-3E185D2/2022,BA.5.2.1 +France/NAQ-HCL722002595401/2022,BA.5.2.1 +Brazil/RJ-FIOCRUZ-9670/2022,BA.5.2.1 +England/QEUH-3DF59B2/2022,BA.5.2.1 +Italy/APU_UNIBA_APU-BA641/2022,BA.5.2.1 +India/TN-INSACOG-CSIR-NEERI1689/2022,BA.5.2.1 +Denmark/DCGC-515326/2022,BA.5.2.1 +Canada/AB-ABPHL-65981/2022,BA.5.2.1 +Israel/CVL-8006927/2022,BA.5.2.1 +Germany/BY-RKI-I-816923/2022,BA.5.2.1 +Portugal/PT34772/2022,BA.5.2.1 +USA/WA-CDC-LC0608411/2022,BA.5.2.1 +Israel/ICH-741223298/2022,BA.5.2.1 +England/LSPA-3E04111/2022,BA.5.2.1 +England/LSPA-3E09097/2022,BA.5.2.1 +Portugal/PT34866/2022,BA.5.2.1 +France/ARA-HCL022082376901/2022,BA.5.2.1 +Brazil/GO-HLAGYN-2222961/2022,BA.5.2.1 +Belgium/ULG-26327/2022,BA.5.2.1 +England/LSPA-3E114BE/2022,BA.5.2.1 +Israel/ICH-741222041/2022,BA.5.2.1 +France/ARA-HCL022074872002/2022,BA.5.2.1 +Germany/BB-RKI-I-786496/2022,BA.5.2.1 +England/QEUH-3E0F0CE/2022,BA.5.2.1 +Israel/SMC-7069182/2022,BA.5.2.1 +Spain/CT-LRC-2878502/2022,BA.5.2.1 +Austria/LB-R00073-S230/2022,BA.5.2.1 +England/LSPA-3E1448E/2022,BA.5.2.1 +USA/WA-CDC-LC0619195/2022,BA.5.2.1 +USA/NY-PRL-220511_04B10/2022,BA.5.2.1 +USA/MA-Broad-CRSP_QFSNWLGJ5TNRKNTP/2022,BA.5.2.1 +England/LSPA-3E1CC51/2022,BA.5.2.1 +Sweden/01_SE100_22CS505320/2022,BA.5.2.1 +England/LSPA-3E00388/2022,BA.5.2.1 +India/TN-INSACOG-CSIR-NEERI1686/2022,BA.5.2.1 +England/QEUH-3E17D08/2022,BA.5.2.1 +Denmark/DCGC-514105/2022,BA.5.2.1 +Japan/IC-9322/2022,BA.5.2.1 +Scotland/LSPA-3E1770A/2022,BA.5.2.1 +England/QEUH-3DEE6C4/2022,BA.5.2.1 +Belgium/UZA-UA-CV8524598961/2022,BA.5.2.1 +Norway/Ahus-3786/2022,BA.5.2.1 +Germany/BY-RKI-I-783631/2022,BA.5.2.1 +England/LSPA-3E0233B/2022,BA.5.2.1 +England/LSPA-3E15BE2/2022,BA.5.2.1 +USA/UT-CDC-LC0602283/2022,BA.5.2.1 +Belgium/UZA-UA-CV8405364137/2022,BA.5.2.1 +England/LSPA-3E15E9E/2022,BA.5.2.1 +England/PHEC-YYF8ARP/2022,BA.5.2.1 +Germany/SH-RKI-I-794738/2022,BA.5.2.1 +Israel/ICH-741224217/2022,BA.5.2.1 +Germany/BY-RKI-I-817110/2022,BA.5.2.1 +Germany/BY-RKI-I-797769/2022,BA.5.2.1 +Germany/NW-RKI-I-799266/2022,BA.5.2.1 +England/LSPA-3E14AF5/2022,BA.5.2.1 +England/LSPA-3E13CA5/2022,BA.5.2.1 +England/LSPA-3E0DDD8/2022,BA.5.2.1 +England/QEUH-3E0FFC1/2022,BA.5.2.1 +Austria/LB-R00076-S284/2022,BA.5.2.1 +USA/NY-PRL-220516_02E20/2022,BA.5.2.1 +Brazil/RJ-FIOCRUZ-9669/2022,BA.5.2.1 +England/LSPA-3E137D1/2022,BA.5.2.1 +Germany/NW-RKI-I-789559/2022,BA.5.2.1 +USA/CT-YPL22-32008/2022,BA.5.2.1 +Denmark/DCGC-515976/2022,BA.5.2.1 +USA/NE-NM_L353111190/2022,BA.5.2.1 +England/LSPA-3DF9435/2022,BA.5.2.1 +USA/NY-PRL-0504_01H08/2022,BA.5.2.1 +Wales/PHWC-PJ59KU/2022,BA.5.2.1 +USA/NY-PRL-220511_05B23/2022,BA.5.2.1 +England/LSPA-3E15BB5/2022,BA.5.2.1 +Germany/BE-RKI-I-791622/2022,BA.5.2.1 +Wales/PHWC-PJ57NF/2022,BA.5.2.1 +USA/PA-CDC-LC0620957/2022,BA.5.2.1 +Israel/CVL-9004259/2022,BA.5.2.1 +USA/NY-CDC-QDX36558337/2022,BA.5.2.1 +India/TN-INSACOG-CSIR-NEERI1685/2022,BA.5.2.1 +USA/NE-NM_L353105728/2022,BA.5.2.1 +USA/NE-NM_L353056800/2022,BA.5.2.1 +USA/MA-Broad-CRSP_PPZVHOYCTKFFYGKQ/2022,BA.5.2.1 +Belgium/CHUNamur14158466/2022,BA.5.2.1 +Netherlands/ZH-NMDL-01742/2022,BA.5.2.1 +England/LSPA-3DFA70E/2022,BA.5.2.1 +Germany/BY-RKI-I-795901/2022,BA.5.2.1 +Spain/IB-HUSE-05175/2022,BA.5.2.1 +India/TN-INSACOG-CSIR-NEERI1681/2022,BA.5.2.1 +Germany/SH-RKI-I-802748/2022,BA.5.2.1 +England/LSPA-3E1C9C3/2022,BA.5.2.1 +Scotland/LSPA-3E04CD4/2022,BA.5.2.1 +England/LSPA-3DFFB76/2022,BA.5.2.1 +Australia/VIC55423/2022,BA.5.2.1 +Spain/CT-HUB05092/2022,BA.5.2.1 +Austria/LB-R00076-S324/2022,BA.5.2.1 +Germany/RP-RKI-I-787161/2022,BA.5.2.1 +Brazil/SP-IB_156860/2022,BA.5.2.1 +Belgium/UZA-UA-CV8525438821/2022,BA.5.2.1 +USA/NJ-CDC-QDX36360250/2022,BA.5.2.1 +England/LSPA-3E0231D/2022,BA.5.2.1 +Austria/LB-R00076-S320/2022,BA.5.2.1 +France/ARA-HCL022077174201/2022,BA.5.2.1 +USA/AZ-ASU74089/2022,BA.5.2.1 +Austria/LB-R00073-S222/2022,BA.5.2.1 +Germany/BY-RKI-I-815784/2022,BA.5.2.1 +England/PHEP-YYR69B6/2022,BA.5.2.1 +Austria/LB-R00076-S339/2022,BA.5.2.1 +USA/WA-CDC-UW22051234348/2022,BA.5.2.1 +Israel/ICH-741223559/2022,BA.5.2.1 +Belgium/AZDelta-2219-09095/2022,BA.5.2.1 +England/LSPA-3E0032E/2022,BA.5.2.1 +USA/NY-PRL-220516_02I10/2022,BA.5.2.1 +England/LSPA-3E1CC24/2022,BA.5.2.1 +England/LSPA-3E14B4D/2022,BA.5.2.1 +Germany/NW-RKI-I-799256/2022,BA.5.2.1 +USA/IA-SHL-2098356/2022,BA.5.2.1 +Australia/QLD0x00E89B/2022,BA.5.2.1 +Germany/NW-RKI-I-797594/2022,BA.5.2.1 +Germany/NW-RKI-I-797595/2022,BA.5.2.1 +Japan/TKYS14631/2022,BA.5.2.1 +USA/VA-Curative-361789/2022,BA.5.2.1 +USA/MA-Broad-CRSP_D57TJGNXTH3FVS43/2022,BA.5.2.1 +USA/NY-PRL-220516_00G20/2022,BA.5.2.1 +Netherlands/NH-AUMC-019047/2022,BA.5.2.1 +England/QEUH-3E0FFEF/2022,BA.5.2.1 +USA/NY-PRL-220516_02M12/2022,BA.5.2.1 +England/LSPA-3DFFC19/2022,BA.5.2.1 +Denmark/DCGC-516269/2022,BA.5.2.1 +Germany/BY-RKI-I-788345/2022,BA.5.2.1 +USA/NY-PRL-220511_08D07/2022,BA.5.2.1 +USA/NY-PRL-2022_0506_01K21/2022,BA.5.2.1 +England/LSPA-3E1A36D/2022,BA.5.2.1 +Israel/ICH-741223977/2022,BA.5.2.1 +England/LSPA-3DFA21C/2022,BA.5.2.1 +Austria/LB-R00076-S282/2022,BA.5.2.1 +England/LSPA-3DF3653/2022,BA.5.2.1 +England/LSPA-3E144CA/2022,BA.5.2.1 +India/TN-INSACOG-CSIR-NEERI1687/2022,BA.5.2.1 +Germany/BY-RKI-I-817395/2022,BA.5.2.1 +France/NAQ-HCL022080281801/2022,BA.5.2.1 +USA/NY-MSHSPSP-PV58128/2022,BA.5.2.1 +Austria/LB-R00076-S329/2022,BA.5.2.1 +Denmark/DCGC-511622/2022,BA.5.2.1 +USA/WA-CDC-UW22050905412/2022,BA.5.2.1 +Scotland/LSPA-3E1763A/2022,BA.5.2.1 +USA/NJ-CDC-QDX36360268/2022,BA.5.2.1 +Denmark/DCGC-517244/2022,BA.5.2.1 +Germany/BY-RKI-I-807694/2022,BA.5.2.1 +Denmark/DCGC-517451/2022,BA.5.2.1 +Germany/HE-RKI-I-798413/2022,BA.5.2.1 +Italy/SIC-AOUME-UOSD-GCL-278133014/2022,BA.5.2.1 +Belgium/Jessa_55-2219-000068/2022,BA.5.2.1 +Israel/ICH-741222780/2022,BA.5.2.1 +England/LSPA-3DFE62B/2022,BA.5.2.1 +Spain/CT-HUB05064/2022,BA.5.2.1 +Denmark/DCGC-517015/2022,BA.5.2.1 +Brazil/RJ-FIOCRUZ-9801/2022,BA.5.2.1 +Austria/LB-R00076-S316/2022,BA.5.2.1 +Scotland/LSPA-3E09F12/2022,BA.5.2.1 +Japan/IC-9093/2022,BA.5.2.1 +Israel/CVL-8006586/2022,BA.5.2.1 +USA/NY-PRL-0502_01A04/2022,BA.5.2.1 +Spain/CT-HUGTiPM092XK5B1/2022,BA.5.2.1 +Germany/BY-RKI-I-788794/2022,BA.5.2.1 +Singapore/5077/2022,BA.5.2.1 +Israel/SMC-7068288/2022,BA.5.2.1 +England/LSPA-3E15D73/2022,BA.5.2.1 +Germany/BY-RKI-I-788275/2022,BA.5.2.1 +Portugal/PT34954/2022,BA.5.2.1 +Scotland/QEUH-3DEB612/2022,BA.5.2.1 +England/LSPA-3E180B3/2022,BA.5.2.1 +Spain/CT-HUGTiPM092XK5A3/2022,BA.5.2.1 +France/NAQ-HCL022081596001/2022,BA.5.2.1 +England/LSPA-3E1704B/2022,BA.5.2.1 +England/LSPA-3E0C7AE/2022,BA.5.2.1 +Austria/LB-R00076-S309/2022,BA.5.2.1 +India/GJ-INSACOG-GBRC6911/2022,BA.5.2.1 +England/LSPA-3E196FC/2022,BA.5.2.1 +Spain/CT-HUGTiPM093CN1B6/2022,BA.5.2.1 +Netherlands/NB-GD-03719011/2022,BA.5.2.1 +USA/TX-CDC-QDX36605384/2022,BA.5.2.1 +Austria/LB-R00073-S194/2022,BA.5.2.1 +England/LSPA-3DFB21B/2022,BA.5.2.1 +Austria/LB-R00076-S333/2022,BA.5.2.1 +USA/WA-CDC-LC0607998/2022,BA.5.2.1 +USA/AZ-ASU74073/2022,BA.5.2.1 +USA/NY-PRL-2022_0506_01E19/2022,BA.5.2.1 +USA/NY-PRL-220518_01A23/2022,BA.5.2.1 +England/LSPA-3E15E25/2022,BA.5.2.1