From 4803957b9b634b2cd798b181ae8f5d3404166e27 Mon Sep 17 00:00:00 2001 From: Cornelius Roemer Date: Tue, 23 May 2023 17:17:11 +0200 Subject: [PATCH] Designate FL.4.1 (S:N450I) with 80 sequences --- lineage_notes.txt | 1 + lineages.csv | 84 ++++++++++++++++++++++++++++++++++++++++++++--- 2 files changed, 81 insertions(+), 4 deletions(-) diff --git a/lineage_notes.txt b/lineage_notes.txt index 0f9dc21f..238d39cf 100644 --- a/lineage_notes.txt +++ b/lineage_notes.txt @@ -2731,6 +2731,7 @@ FL.3.2 Alias of XBB.1.9.1.3.2, T8830C, England/Spain FL.3.3 Alias of XBB.1.9.1.3.3, ORF1a:A4285V,ORF1a:V2998I,ORF1a:E772K, England FL.3.4 Alias of XBB.1.9.1.3.4, G10642C, T26232C, England FL.4 Alias of XBB.1.9.1.4, ORF1b:V1092F +FL.4.1 Alias of XBB.1.9.1.4.1, S:N450I FL.5 Alias of XBB.1.9.1.5, N:T362I FL.6 Alias of XBB.1.9.1.6, ORF1a:I849V, Bahrain/Egypt/Oman/Austria FL.7 Alias of XBB.1.9.1.7, S:T51I diff --git a/lineages.csv b/lineages.csv index 1634c3a9..55b09165 100644 --- a/lineages.csv +++ b/lineages.csv @@ -2362962,10 +2362962,6 @@ Indonesia/JK-CW62-3927/2023,FL.4 Indonesia/JK-NIHRD-W00719/2023,FL.4 Indonesia/JK-NIHRD-W00714/2023,FL.4 Indonesia/JK-CW62-3879/2023,FL.4 -NewZealand/23ZA1657/2023,FL.4 -England/QEUH-326E9824/2023,FL.4 -Indonesia/JK-NIHRD-W01009/2023,FL.4 -Netherlands/ZH-EMC-8000/2023,FL.4 USA/NE-NPHL23-839/2023,FL.4 USA/SD-INBRE-02421/2023,FL.4 USA/2245265/2023,FL.4 @@ -2406807,3 +2406803,83 @@ USA/FL-CDC-QDX49504501/2023,XBB.1.5.70 USA/NY-CDC-QDX49276070/2023,XBB.1.5.70 Chile/RM-30129/2023,XBB.1.5.70 USA/NJ-CDC-LC1037969/2023,XBB.1.5.70 +Germany/BW-RKI-I-1096328/2023,FL.4.1 +Germany/BW-RKI-I-1096191/2023,FL.4.1 +Sweden/01_SE100_23CS501701/2023,FL.4.1 +Singapore/R12MR41/2023,FL.4.1 +PAK/2019-S3/2023,FL.4.1 +Pakistan/IDRL-AKU-KHI-2019-S3/2023,FL.4.1 +USA/WA-CDC-UW23022777834/2023,FL.4.1 +USA/WA-CDC-UW23022743979/2023,FL.4.1 +Malaysia/IMR_CV05461/2023,FL.4.1 +England/QEUH-326E9824/2023,FL.4.1 +USA/NY-Wadsworth-23021458-01/2023,FL.4.1 +Sweden/01_SE100_23CS501369/2023,FL.4.1 +BHR/23020162699/2023,FL.4.1 +USA/OH-CDC-QDX48853924/2023,FL.4.1 +USA/MI-CDC-QDX47973928/2023,FL.4.1 +France/ARA-HCL-723000673501/2023,FL.4.1 +France/ARA-HCL723000509601/2023,FL.4.1 +Italy/VEN-IZSVe-23RS8108-1_VI/2023,FL.4.1 +Thailand/NIC_SKA_1430/2023,FL.4.1 +Indonesia/JK-NIHRD-W01108/2023,FL.4.1 +Indonesia/JK-NIHRD-W01428/2023,FL.4.1 +Greece/NPHO-4949/2023,FL.4.1 +Greece/NPHO-3842/2023,FL.4.1 +Greece/NPHO-4043/2023,FL.4.1 +Greece/NPHO-4042/2023,FL.4.1 +Japan/PG-474979/2023,FL.4.1 +PuertoRico/PR-CVL-015974/2023,FL.4.1 +Canada/BC-BCCDC-623486/2023,FL.4.1 +Canada/BC-BCCDC-625228/2023,FL.4.1 +Denmark/DCGC-645019/2023,FL.4.1 +Australia/NSW-ICPMR-45610/2023,FL.4.1 +USA/CA-GBW-H10-012-3078/2023,FL.4.1 +USA/CA-GBW-H20-318-9364/2023,FL.4.1 +BHR/5902905609_S68_L001/2023,FL.4.1 +BHR/5902905456_S74_L001/2023,FL.4.1 +Sweden/01_SE100_23CS501716/2023,FL.4.1 +Netherlands/NH-RIVM-129641/2023,FL.4.1 +Netherlands/ZH-EMC-8000/2023,FL.4.1 +England/PHEC-YYEJYS3/2023,FL.4.1 +Indonesia/JK-NIHRD-W01009/2023,FL.4.1 +Indonesia/JK-NIHRD-W01070/2023,FL.4.1 +Austria/AGES-1134279/2023,FL.4.1 +Germany/NW-RKI-I-1129977/2023,FL.4.1 +Austria/LB-R00128-S311/2023,FL.4.1 +SouthKorea/KDCA231823/2023,FL.4.1 +Japan/PG-453522/2023,FL.4.1 +Japan/PG-453481/2023,FL.4.1 +Japan/PG-450915/2023,FL.4.1 +SouthKorea/KDCA229015/2023,FL.4.1 +SouthKorea/KDCA229016/2023,FL.4.1 +SouthKorea/KDCA221254/2023,FL.4.1 +SouthKorea/KDCA231721/2023,FL.4.1 +SouthKorea/KDCA229860/2023,FL.4.1 +SouthKorea/KDCA229972/2023,FL.4.1 +SouthKorea/KDCA226385/2023,FL.4.1 +Singapore/R20MR16/2023,FL.4.1 +Japan/TKYkbm88765/2023,FL.4.1 +NewZealand/23XA1740/2023,FL.4.1 +England/QEUH-3270353B/2023,FL.4.1 +SouthKorea/KDCA-234840/2023,FL.4.1 +Australia/VIC82515/2023,FL.4.1 +NewZealand/23XA2349/2023,FL.4.1 +USA/WA-CDC-UW23041657464/2023,FL.4.1 +Australia/WA13034/2023,FL.4.1 +Australia/WA12724/2023,FL.4.1 +Australia/WA12528/2023,FL.4.1 +NewZealand/23ZA1657/2023,FL.4.1 +NewZealand/23ZA1656/2023,FL.4.1 +Australia/NSW-ICPMR-44786/2023,FL.4.1 +NewZealand/23ZA1644/2023,FL.4.1 +Australia/ACT-RSBCB-11342/2023,FL.4.1 +Australia/VIC83380/2023,FL.4.1 +Australia/VIC83730/2023,FL.4.1 +Singapore/R20MR161/2023,FL.4.1 +Singapore/R20MR154/2023,FL.4.1 +Australia/WA12381/2023,FL.4.1 +SouthKorea/KDCA224197/2023,FL.4.1 +USA/CA-GBW-H20-304-7234/2023,FL.4.1 +Australia/WA12300/2023,FL.4.1 +Australia/NSW-ICPMR-43713/2023,FL.4.1