diff --git a/lineage_notes.txt b/lineage_notes.txt index 94bdff28..b1fef99b 100644 --- a/lineage_notes.txt +++ b/lineage_notes.txt @@ -1108,11 +1108,14 @@ KP.4.2 Alias of B.1.1.529.2.86.1.1.11.1.4.2, S:R346T, S:K187R JN.1.12 Alias of B.1.1.529.2.86.1.1.12, S:F456V, ORF7a:A8T, from sars-cov-2-variants/lineage-proposals#1253 JN.1.13 Alias of B.1.1.529.2.86.1.1.13, S:A1087S, after C26894T, C25680T, USA, from #2464 JN.1.13.1 Alias of B.1.1.529.2.86.1.1.13.1, S:R346T, S:F59S, USA, from sars-cov-2-variants/lineage-proposals/issues/1386 -KS.1 Alias of B.1.1.529.2.86.1.1.13.1.1, S:F456L,from sars-cov-2-variants/lineage-proposals#1253 +KS.1 Alias of B.1.1.529.2.86.1.1.13.1.1, S:F456L, from sars-cov-2-variants/lineage-proposals#1253 JN.1.14 Alias of B.1.1.529.2.86.1.1.14, S:R346S, after C26894T, C25680T, USA JN.1.15 Alias of B.1.1.529.2.86.1.1.15, S:A688V JN.1.16 Alias of B.1.1.529.2.86.1.1.16, S:F456L, from sars-cov-2-variants/lineage-proposals#1253 -JN.1.16.1 Alias of B.1.1.529.2.86.1.1.16.1, S:R346T,from sars-cov-2-variants/lineage-proposals#1089 +JN.1.16.1 Alias of B.1.1.529.2.86.1.1.16.1, S:R346T, from sars-cov-2-variants/lineage-proposals#1089 +JN.1.16.2 Alias of B.1.1.529.2.86.1.1.16.2, C4777T +LA.1 Alias of B.1.1.529.2.86.1.1.16.2.1, S:R346T +LA.2 Alias of B.1.1.529.2.86.1.1.16.2.2, S:R346I JN.1.17 Alias of B.1.1.529.2.86.1.1.17, S:A222V, USA JN.1.18 Alias of B.1.1.529.2.86.1.1.18, S:R346T, directly on JN.1 polytomy, from sars-cov-2-variants/lineage-proposals#1089 JN.1.18.1 Alias of B.1.1.529.2.86.1.1.18.1, S:T250N, from sars-cov-2-variants/lineage-proposals#1414 diff --git a/lineages.csv b/lineages.csv index 6d2a288d..697f6293 100644 --- a/lineages.csv +++ b/lineages.csv @@ -2524860,9 +2524860,6 @@ SouthKorea/KDCA286891/2024,JN.1.16.1 USA/MN-MDH-40801/2024,JN.1.16.1 USA/VA-GBW-H20-355-6644/2024,JN.1.16.1 USA/DE-DHSS-B1289881/2024,JN.1.16.1 -England/CLIMB-CM7YKCI4/2024,JN.1.16.1 -USA/CA-GBW-H10-019-4778/2024,JN.1.16.1 -USA/CA-GBW-H20-361-8327/2024,JN.1.16.1 Singapore/R15MQ10/2024,JN.1.16.1 Singapore/R15MQ17/2024,JN.1.16.1 USA/NY-NYULH-18609/2024,JN.1.16.1 @@ -2539172,3 +2539169,90 @@ USA/NY-CDC-LC1079906/2023,JN.1.47.2 England/CLIMB-CM7YROE8/2024,JN.1.47.2 England/CLIMB-CM7YMZ1I/2024,JN.1.47.2 England/CLIMB-CM7YMUI1/2024,JN.1.47.2 +Italy/VEN-AOUIVR-7404469501_VR/2024,JN.1.16.2 +England/CLIMB-CM7YGEUP/2024,JN.1.16.2 +Germany/BW-RKI-I-1143186/2024,JN.1.16.2 +Germany/BW-RKI-I-1143188/2024,JN.1.16.2 +Luxembourg/LNS9663897/2024,JN.1.16.2 +Netherlands/ZH-RIVM-138258/2024,JN.1.16.2 +Wales/CLIMB-CM7YRQ7A/2024,JN.1.16.2 +Wales/CLIMB-CM7YJABM/2024,JN.1.16.2 +England/CLIMB-CM7Y8CTU/2024,JN.1.16.2 +England/CLIMB-CM7YR4F1/2024,JN.1.16.2 +Canada/AB-ABPHL-115059/2024,JN.1.16.2 +USA/TX-HMH-M-139283/2024,JN.1.16.2 +Australia/SA1318374/2024,JN.1.16.2 +Australia/SA1300792/2024,JN.1.16.2 +England/CLIMB-CM7YRTRH/2024,JN.1.16.2 +England/CLIMB-CM7YMZ4W/2024,JN.1.16.2 +England/CLIMB-CM7YR5KR/2024,JN.1.16.2 +England/CLIMB-CM7YMIXM/2024,JN.1.16.2 +England/CLIMB-CM7YJAYW/2024,JN.1.16.2 +Canada/NL-NML-706220/2024,JN.1.16.2 +Canada/NL-NML-706228/2024,JN.1.16.2 +Canada/NL-NML-705280/2024,JN.1.16.2 +Canada/NL-NML-705275/2024,JN.1.16.2 +USA/NY-CDC-LC1100412/2024,JN.1.16.2 +Israel/ICH-741201235/2024,JN.1.16.2 +France/ARA-RELAB-HCL724000126401/2024,JN.1.16.2 +France/ARA-RELAB-HCL724000118201/2024,JN.1.16.2 +England/CLIMB-CM7YFIUF/2024,LA.1 +England/CLIMB-CM7YKCI4/2024,LA.1 +USA/NJ-PHEL-V24004364/2024,LA.1 +Pakistan/KMU_PHRL-1221/2024,LA.1 +England/CLIMB-CM7YRC1O/2024,LA.1 +England/CLIMB-CM7YMIPA/2024,LA.1 +USA/NJ-GBW-H10-017-7585/2024,LA.1 +USA/NJ-GBW-H20-345-9904/2024,LA.1 +USA/NY-CDC-LC1101116/2024,LA.1 +USA/CA-CDPH-500134981/2024,LA.1 +USA/FL-GBW-GKPLAAAA10634/2024,LA.1 +USA/FL-GBW-GKISBBBB31700/2024,LA.1 +England/CLIMB-CM7YE5D4/2024,LA.1 +England/CLIMB-CM7Y8F5X/2024,LA.1 +Ireland/LK-UHL-681701/2024,LA.1 +USA/CA-GBW-H20-361-8327/2024,LA.1 +USA/CA-GBW-H10-019-4778/2024,LA.1 +Australia/SA1358472/2024,LA.1 +Australia/SA1354471/2024,LA.1 +Australia/SA1351860/2024,LA.1 +Australia/SA1359595/2024,LA.1 +Australia/SA1356587/2024,LA.1 +Australia/SA1354464/2024,LA.1 +Australia/SA1370050/2024,LA.1 +Australia/SA1360401/2024,LA.1 +England/CLIMB-CM7YMJQW/2024,LA.1 +Singapore/R18MQ14/2024,LA.1 +France/IDF-IPP04720/2024,LA.1 +England/CLIMB-CM7YFMEY/2024,LA.1 +England/CLIMB-CM7YMCIS/2024,LA.1 +England/CLIMB-CM7YGA56/2024,LA.1 +England/CLIMB-CM7YFZN9/2024,LA.1 +England/CLIMB-CM7YFZWY/2024,LA.1 +England/CLIMB-CM7YMJH9/2024,LA.1 +England/CLIMB-CM7Y8HJE/2024,LA.1 +England/CLIMB-CM7Y8IBJ/2024,LA.1 +England/CLIMB-CM7YKUPA/2024,LA.1 +England/CLIMB-CM7Y8WO1/2024,LA.1 +England/CLIMB-CM7YGE7N/2024,LA.1 +Canada/SK-RRPL-706264/2024,LA.2 +USA/FL-CDC-LC1101754/2024,LA.2 +USA/NY-GBW-GKISBBBB34349/2024,LA.2 +Malaysia/MKAI-6763896/2024,LA.2 +USA/CA-HLX-STM-KTGQAXWB3/2024,LA.2 +England/CLIMB-CM7YR5T7/2024,LA.2 +England/CLIMB-CM7YJ1DY/2024,LA.2 +England/CLIMB-CM7YJ5OQ/2024,LA.2 +England/CLIMB-CM7YFGUJ/2024,LA.2 +England/CLIMB-CM7YFNSJ/2024,LA.2 +England/CLIMB-CM7YEBB9/2024,LA.2 +England/CLIMB-CM7YRWZU/2024,LA.2 +England/CLIMB-CM7YJYDG/2024,LA.2 +England/CLIMB-CM7Y8YHP/2024,LA.2 +England/CLIMB-CM7YM1ZZ/2024,LA.2 +England/CLIMB-CM7Y8X1E/2024,LA.2 +Canada/SK-RRPL-707393/2024,LA.2 +England/CLIMB-CM7YGO4A/2024,LA.2 +Canada/SK-RRPL-707380/2024,LA.2 +Canada/BC-BCCDC-705892/2024,LA.2 +England/CLIMB-CM7Y8Y7Y/2024,LA.2 diff --git a/pango_designation/alias_key.json b/pango_designation/alias_key.json index 61eeb1c7..fb7ee58b 100644 --- a/pango_designation/alias_key.json +++ b/pango_designation/alias_key.json @@ -246,6 +246,7 @@ "KW": "B.1.1.529.2.86.1.1.28.1", "KY": "B.1.1.529.2.86.1.1.8.2", "KZ": "B.1.1.529.2.86.1.1.1.6", + "LA": "B.1.1.529.2.86.1.1.16.2", "XA": ["B.1.1.7","B.1.177"], "XB": ["B.1.634","B.1.631"], "XC": ["AY.29","B.1.1.7"],