From 8d1a199528a4bdf8dc2a50989300a6057b550151 Mon Sep 17 00:00:00 2001 From: Cornelius Roemer Date: Sat, 15 Oct 2022 21:53:22 +0200 Subject: [PATCH] Added BN.6 (ORF1a:T3959A) with 180 designations --- lineage_notes.txt | 1 + lineages.csv | 168 ++++++++++++++++++++++++++++++++++++++++++++-- 2 files changed, 164 insertions(+), 5 deletions(-) diff --git a/lineage_notes.txt b/lineage_notes.txt index 62d32ba4..2e01bd61 100644 --- a/lineage_notes.txt +++ b/lineage_notes.txt @@ -834,6 +834,7 @@ BN.3 Alias of B.1.1.529.2.75.5.3, defined by S:N450D on ORF1a:392D branch BN.3.1 Alias of B.1.1.529.2.75.5.3.1, South Korea/Austria/Israel/Belgium, defined by S:F490S BN.4 Alias of B.1.1.529.2.75.5.4, Netherlands/Germany, defined by S:F490S on ORF1a:392D branch BN.5 Alias of B.1.1.529.2.75.5.5, India, defined by ORF1a:V2995M +BN.6 Alias of B.1.1.529.2.75.5.6, India, defined by ORF1a:T3959A BA.2.75.6 Alias of B.1.1.529.2.75.6, mainly found in India, defined by S:R346T on the BA.2.75 polytomy BY.1 Alias of B.1.1.529.2.75.6.1, mainly found in India, defined by S:F486S on BA.2.75.6 BA.2.75.7 Alias of B.1.1.529.2.75.7, mainly found in India, defined by S:F486S on the BA.2.75 polytomy diff --git a/lineages.csv b/lineages.csv index 02d6537e..7318031a 100644 --- a/lineages.csv +++ b/lineages.csv @@ -1996081,7 +1996081,6 @@ India/KA-ICMR-INSACOG-VRDL-MYS-77642/2022,BA.2.75 India/GJ-INSACOG-GBRC7897/2022,BA.2.75 India/KA-ICMR-INSACOG-VRDL-MYS-77046/2022,BA.2.75 India/OR-ILSGS18227/2022,BA.2.75 -India/TN-CDFD-J7-1446/2022,BA.2.75 USA/WA-CDC-LC0778878/2022,BA.2.75 India/MH-KasturbaMCGM-ICMR-INSACOG-WG4816/2022,BA.2.75 Italy/LOM_Policlinico_Milano_25814204/2022,BA.2.75 @@ -1996334,7 +1996333,6 @@ India/KA-ICMR-INSACOG-VRDL-MYS-80203/2022,BA.2.75 India/TG-CDFD-GH-145/2022,BA.2.75 India/PB-VRDLGMCPTA-ICMR-INSACOG-GS0000232/2022,BA.2.75 India/TG-CDFD-GH-141/2022,BA.2.75 -India/TG-CDFD-GH-701/2022,BA.2.75 India/MH-KasturbaMCGM-ICMR-INSACOG-WG4825/2022,BA.2.75 India/PB-VRDLGMCPTA-ICMR-INSACOG-GS000123/2022,BA.2.75 India/RJ-SMS-ICMR-INSACOG-TS-14989/2022,BA.2.75 @@ -2102304,7 +2102302,6 @@ Sweden/SUS0015172/2022,BA.5.2.33 Sweden/SUS0015178/2022,BA.5.2.33 Sweden/SUS0015034/2022,BA.5.2.33 England/PHEP-YYF1KRR/2022,BA.5.2.33 -OX271497.1,BA.5.2.33 England/LSPA-3F32C90/2022,BA.5.2.33 England/LSPA-3F092CD/2022,BA.5.2.33 England/LSPA-3F0848C/2022,BA.5.2.33 @@ -2104687,7 +2104684,6 @@ Belgium/ULG-28412/2022,CP.1 England/PHEC-YYG4WBX/2022,CP.1 Israel/SMC-7098135/2022,CP.1 Israel/SMC-7098673/2022,CP.1 -OX343390.1,CP.1 England/QEUH-32579BA9/2022,CP.1 England/PHEP-YYFSKRH/2022,CP.1 England/PHEP-YYFAUH6/2022,CP.1 @@ -2107988,4 +2107984,166 @@ Singapore/10998/2022,BN.5 Singapore/11674/2022,BN.5 Singapore/12030/2022,BN.5 Singapore/12029/2022,BN.5 - +Germany/NW-RKI-I-986314/2022,BN.6 +India/TN-CDFD-S-157/2022,BN.6 +India/TN-CDFD-S-20/2022,BN.6 +USA/MI-CDC-QDX41125510/2022,BN.6 +Singapore/11721/2022,BN.6 +Germany/BW-RKI-I-966465/2022,BN.6 +India/KA-NIMH-SEQ-5599/2022,BN.6 +USA/CT-YPL22-41105/2022,BN.6 +India/MH-RFIP14834/2022,BN.6 +India/TG-CDFD-SR-152/2022,BN.6 +India/KA-INSACOG-CBR-SEQ17916/2022,BN.6 +Singapore/11328/2022,BN.6 +India/TN-CDFD-A-305/2022,BN.6 +India/TG-CDFD-GH-1086/2022,BN.6 +India/TG-CDFD-GH-1079/2022,BN.6 +Singapore/10793/2022,BN.6 +USA/AZ-ASU89653/2022,BN.6 +USA/NV-CDC-QDX40271938/2022,BN.6 +India/TG-CDFD-GH-701/2022,BN.6 +India/TN-CDFD-J7-1052/2022,BN.6 +India/KA-SLS-SEQ-42219/2022,BN.6 +India/KA-INSACOG-CBR-SEQ17366/2022,BN.6 +India/TN-CDFD-S-242/2022,BN.6 +India/TN-CDFD-S-519/2022,BN.6 +India/TG-CDFD-GH-1006/2022,BN.6 +India/TN-CDFD-J7-1253/2022,BN.6 +India/KA-ICMR-INSACOG-VRDL-MYS-4324/2022,BN.6 +Germany/NW-RKI-I-991327/2022,BN.6 +Singapore/12346/2022,BN.6 +India/TN-CDFD-S-25/2022,BN.6 +India/TG-CDFD-GH-1081/2022,BN.6 +India/TG-CDFD-GH-1007/2022,BN.6 +India/TN-CDFD-S-294/2022,BN.6 +India/TN-CDFD-S-338/2022,BN.6 +USA/TX-HHD-2209148026/2022,BN.6 +India/TG-CDFD-GH-923/2022,BN.6 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