From 910b47c5cfb5344eed350677f0da02bf163e1306 Mon Sep 17 00:00:00 2001 From: Cornelius Roemer Date: Sat, 15 Oct 2022 21:56:47 +0200 Subject: [PATCH] Added lineage CA.3 (N:M101I) with 180 designations --- lineage_notes.txt | 1 + lineages.csv | 134 ++++++++++++++++++++++++++++++++++++++++++++++ 2 files changed, 135 insertions(+) diff --git a/lineage_notes.txt b/lineage_notes.txt index 2e01bd61..f1019d44 100644 --- a/lineage_notes.txt +++ b/lineage_notes.txt @@ -796,6 +796,7 @@ BL.4 Alias of B.1.1.529.2.75.1.4, mainly found in India, defined by ORF7a:P45L w BA.2.75.2 Alias of B.1.1.529.2.75.2, mainly found in Asia and Australia, pango-designation issue #963 CA.1 Alias of B.1.1.529.2.75.2.1, USA lineage, defined by S:604I and S:452R, pango-designation issue #1063 CA.2 Alias of B.1.1.529.2.75.2.2, international lineage, defined by S:S494P +CA.3 Alias of B.1.1.529.2.75.2.3, India, defined by N:M101I BA.2.75.3 Alias of B.1.1.529.2.75.3, mainly found in India, pango-designation issue #965 BM.1 Alias of B.1.1.529.2.75.3.1, mainly found in India, pango-designation issue #965 BM.1.1 Alias of B.1.1.529.2.75.3.1.1, mainly found in India (West Bengal), defined by S:346T diff --git a/lineages.csv b/lineages.csv index 7318031a..8aeece1f 100644 --- a/lineages.csv +++ b/lineages.csv @@ -2108147,3 +2108147,137 @@ India/TN-CDFD-S-253/2022,BN.6 India/TN-CDFD-S-252/2022,BN.6 India/TN-CDFD-S-185/2022,BN.6 Singapore/11783/2022,BN.6 +USA/CA-CDC-QDX40660363/2022,CA.3 +India/KA-RFNB-17279/2022,CA.3 +Singapore/11580/2022,CA.3 +Singapore/11681/2022,CA.3 +Australia/NSW-ICPMR-33642/2022,CA.3 +India/KA-RFNB-17176/2022,CA.3 +India/TN-CDFD-S-221/2022,CA.3 +USA/NY-NYCPHL-015236/2022,CA.3 +England/LSPA-325816E9/2022,CA.3 +India/TN-CDFD-S-565/2022,CA.3 +India/TN-CDFD-S-444/2022,CA.3 +India/TN-CDFD-S-443/2022,CA.3 +USA/NY-PRL-220921_00A07/2022,CA.3 +India/MH-ICMR-INSACOG-WG5147/2022,CA.3 +India/MH-ICMR-INSACOG-WG4954/2022,CA.3 +India/MH-ICMR-INSACOG-WG4963/2022,CA.3 +Canada/BC-BCCDC-504384/2022,CA.3 +Japan/PG-328251/2022,CA.3 +India/TN-CDFD-S-249/2022,CA.3 +India/TN-CDFD-S-630/2022,CA.3 +India/TN-CDFD-S-439/2022,CA.3 +India/TN-CDFD-S-422/2022,CA.3 +India/MH-ICMR-INSACOG-WG4973/2022,CA.3 +Israel/SMC-7102887/2022,CA.3 +India/KA-ICMR-INSACOG-VRDL-MYS-8703/2022,CA.3 +Australia/NSW-ICPMR-33461/2022,CA.3 +India/TN-INSACOG-CSIR-NEERI2756/2022,CA.3 +Singapore/12712/2022,CA.3 +India/MH-ICMR-NIV-INSACOG-NIV2223890/2022,CA.3 +India/MH-ICMR-NIV-INSACOG-G-12475/2022,CA.3 +Singapore/11307/2022,CA.3 +Singapore/10953/2022,CA.3 +Luxembourg/LNS9706761/2022,CA.3 +USA/PA-CDC-LC0874204/2022,CA.3 +Denmark/DCGC-589619/2022,CA.3 +Denmark/DCGC-588098/2022,CA.3 +India/TN-CDFD-S-360/2022,CA.3 +India/TN-CDFD-S-359/2022,CA.3 +USA/OH-CDC-QDX41756031/2022,CA.3 +USA/MD-CDC-QDX41638385/2022,CA.3 +India/MH-ICMR-INSACOG-WG5023/2022,CA.3 +Singapore/10539/2022,CA.3 +USA/VA-Curative-449024/2022,CA.3 +India/MH-ICMR-INSACOG-WG4877/2022,CA.3 +India/MH-ICMR-INSACOG-WG4878/2022,CA.3 +India/MH-ICMR-INSACOG-WG4872/2022,CA.3 +Canada/BC-BCCDC-504413/2022,CA.3 +India/GJ-INSACOG-GBRC8959/2022,CA.3 +NewZealand/22XA3261/2022,CA.3 +Indonesia/JK-NIHRD-WGS-22-25250/2022,CA.3 +India/GJ-INSACOG-GBRC8830/2022,CA.3 +India/MH-ICMR-12374/2022,CA.3 +BHR/22020518052_S59_L001/2022,CA.3 +Austria/LB-R00099-S106/2022,CA.3 +USA/MI-UM-10047222599/2022,CA.3 +NewZealand/22YA2893/2022,CA.3 +Austria/LB-R00101-S037/2022,CA.3 +USA/MA-CDCBI-CRSP_5RF3VUE733YISPJU/2022,CA.3 +India/KA-RFNB-16968/2022,CA.3 +India/KA-RFNB-16731/2022,CA.3 +India/KA-RFNB-17364/2022,CA.3 +India/KA-RFNB-16765/2022,CA.3 +England/PHEC-YY8Y3MK/2022,CA.3 +England/PHEC-YY8DKOE/2022,CA.3 +England/PHEC-YY8Y3PG/2022,CA.3 +SouthKorea/KDCA117723/2022,CA.3 +Switzerland/ZH-Risch-0907R13530/2022,CA.3 +Switzerland/ZH-Risch-0908R13517/2022,CA.3 +Switzerland/ZH-Risch-0907R13516/2022,CA.3 +Switzerland/ZH-Risch-0907R13515/2022,CA.3 +Germany/BW-RKI-I-988757/2022,CA.3 +Switzerland/ZH-UZH-IMV-3ba66825/2022,CA.3 +France/GES-HMN-22092190337/2022,CA.3 +France/GES-LBZCentre-TF220926170/2022,CA.3 +Switzerland/ZH-UZH-IMV-3ba6668d/2022,CA.3 +India/TN-ICMR-INSACOG-SPHL-2124/2022,CA.3 +India/TN-CDFD-S-377/2022,CA.3 +Singapore/12525/2022,CA.3 +India/KA-RFNB-16633/2022,CA.3 +India/TN-CDFD-S-428/2022,CA.3 +India/TN-CDFD-S-432/2022,CA.3 +USA/NY-CDC-LC0883519/2022,CA.3 +USA/NY-CDC-LC0877363/2022,CA.3 +Singapore/12505/2022,CA.3 +Singapore/11552/2022,CA.3 +Singapore/11384/2022,CA.3 +Australia/QLD0x011893/2022,CA.3 +India/MH-ICMR-INSACOG-WG4964/2022,CA.3 +England/PHEC-YYG9ZQE/2022,CA.3 +India/KA-18999_S104_AL_R1_001/2022,CA.3 +India/MH-ICMR-INSACOG-WG4959/2022,CA.3 +NewZealand/22YA2340/2022,CA.3 +Australia/VIC70857/2022,CA.3 +USA/CA-SC-273415/2022,CA.3 +India/MH-RFIP15034/2022,CA.3 +England/PHEC-YYG73MO/2022,CA.3 +Australia/QLD0x011617/2022,CA.3 +USA/CA-CDC-LC0887059/2022,CA.3 +Singapore/12127/2022,CA.3 +Singapore/12410/2022,CA.3 +England/QEUH-3258BDDB/2022,CA.3 +Scotland/LSPA-325978DB/2022,CA.3 +England/LSPA-325926F4/2022,CA.3 +England/PHEC-YY8N4HN/2022,CA.3 +Australia/NSW-ICPMR-34144/2022,CA.3 +OX343454.1,CA.3 +England/PLYM-2C4CF0F4/2022,CA.3 +England/PLYM-2C4CF179/2022,CA.3 +OX343931.1,CA.3 +England/PLYM-2C4CF15B/2022,CA.3 +England/PHEC-YY8YPYC/2022,CA.3 +England/PHEC-YYG9DZJ/2022,CA.3 +England/PHEC-YY8DRE9/2022,CA.3 +England/PHEC-YY8D7H7/2022,CA.3 +England/PHEC-YY8D6YI/2022,CA.3 +England/PHEC-YYG9EWK/2022,CA.3 +England/QEUH-32587ECD/2022,CA.3 +England/QEUH-325884BB/2022,CA.3 +England/QEUH-3258C262/2022,CA.3 +England/QEUH-32589168/2022,CA.3 +England/QEUH-32588275/2022,CA.3 +England/PHEC-YYGHGRU/2022,CA.3 +England/PHEC-YYG51IG/2022,CA.3 +England/PHEC-YYG5POI/2022,CA.3 +England/PHEC-YYG567K/2022,CA.3 +England/PHEC-YYG59D6/2022,CA.3 +England/PHEC-YYG59YR/2022,CA.3 +England/PHEC-YYG59NY/2022,CA.3 +England/PHEC-YYG59BN/2022,CA.3 +Wales/PHWC-PKRMDD/2022,CA.3 +England/PHEC-YYG5191/2022,CA.3 +England/PHEC-YYG9SU6/2022,CA.3 +England/PHEC-YYG9BXH/2022,CA.3 +