diff --git a/lineage_notes.txt b/lineage_notes.txt index cdd04a69..08671217 100644 --- a/lineage_notes.txt +++ b/lineage_notes.txt @@ -2768,6 +2768,8 @@ XBB.1.5.83 A10624G, South Africa XBB.1.5.84 S:M177I, South Africa XBB.1.5.85 S:L176F, S:478R, Trinidad and Tobago/Hong Kong XBB.1.5.86 ORF1a:G2868S, Brazil +HA.1 Alias of XBB.1.5.86.1, S:F456L (22930A), Brazil/Canada +HA.2 Alias of XBB.1.5.86.2, S:P521S, Brazil XBB.1.5.87 S:478R, ORF1a:E1633K, ORF1a:M1588K, C9763T, C20946T, Indonesia XBB.1.5.88 C2299T, South Africa XBB.1.6 USA, S:L216F, S:H146K, from issue #1428 diff --git a/lineages.csv b/lineages.csv index f8b420cf..36ff9cdd 100644 --- a/lineages.csv +++ b/lineages.csv @@ -2414841,42 +2414841,6 @@ USA/NY-URMC-N2S1F381-1/2023,XBB.1.5.86 USA/NY-CDC-VSX-A063814/2023,XBB.1.5.86 USA/NY-URMC-N2S1F368-1/2023,XBB.1.5.86 USA/NY-URMC-N1S1F092-1/2023,XBB.1.5.86 -Canada/ON-PHL-23-25018/2023,XBB.1.5.86 -Canada/ON-PHL-23-25030/2023,XBB.1.5.86 -Canada/ON-PHL-23-25019/2023,XBB.1.5.86 -Canada/ON-PHL-23-25031/2023,XBB.1.5.86 -Canada/ON-PHL-23-25124/2023,XBB.1.5.86 -Canada/ON-PHL-23-25028/2023,XBB.1.5.86 -Canada/ON-PHL-23-25029/2023,XBB.1.5.86 -Canada/ON-PHL-23-25275/2023,XBB.1.5.86 -Canada/ON-PHL-23-25279/2023,XBB.1.5.86 -Canada/ON-PHL-23-25299/2023,XBB.1.5.86 -Canada/ON-PHL-23-25188/2023,XBB.1.5.86 -Canada/ON-PHL-23-25187/2023,XBB.1.5.86 -Canada/ON-PHL-23-25306/2023,XBB.1.5.86 -Brazil/SC-FIOCRUZ-4347-R2/2023,XBB.1.5.86 -Canada/ON-PHL-23-24939-v2/2023,XBB.1.5.86 -Canada/ON-KHS-23-04276-v1/2023,XBB.1.5.86 -Spain/PV-HUD-96086608/2023,XBB.1.5.86 -Spain/PV-HUD-96068941/2023,XBB.1.5.86 -USA/CA-HLX-STM-ZPSYED8R3/2023,XBB.1.5.86 -Brazil/BA-LACEN-BA3735-292969208/2023,XBB.1.5.86 -BRA/LACENAL-270247198/2023,XBB.1.5.86 -Brazil/AL-LACENAL-270247631/2023,XBB.1.5.86 -USA/NY-PRL-230427_81A10/2023,XBB.1.5.86 -BRA/LACENAL-270247631/2023,XBB.1.5.86 -Brazil/AL-LACENAL-270247986/2023,XBB.1.5.86 -Brazil/AL-LACENAL-270248453/2023,XBB.1.5.86 -Japan/TKYnat14118/2023,XBB.1.5.86 -USA/NJ-CDC-QDX49773406/2023,XBB.1.5.86 -BRA/LACENAL-270247194/2023,XBB.1.5.86 -BRA/LACENAL-270247196/2023,XBB.1.5.86 -Brazil/AL-LACENAL-270246760/2023,XBB.1.5.86 -Brazil/AL-LACENAL-270246757/2023,XBB.1.5.86 -Brazil/AL-LACENAL-270248974/2023,XBB.1.5.86 -Brazil/AL-LACENAL-270248961/2023,XBB.1.5.86 -Brazil/MT-LACENAL-270248977/2023,XBB.1.5.86 -Brazil/AL-LACENAL-270248446/2023,XBB.1.5.86 Brazil/SP-IB_CEVC_2206075/2023,XBB.1.5.86 France/HDF-IPP07403/2023,XBB.1.5.86 Brazil/SP-FIOCRUZ-2837/2023,XBB.1.5.86 @@ -2427373,3 +2427337,92 @@ Australia/NSW-ICPMR-47848/2023,GZ.1 Australia/NSW-ICPMR-47225/2023,GZ.1 Australia/NSW-ICPMR-47385/2023,GZ.1 Australia/NSW-ICPMR-47237/2023,GZ.1 +Canada/ON-PHL-23-25306/2023,HA.1 +CanaryIslands/CHUIMI-021437060409/2023,HA.1 +CanaryIslands/CHUIMI-021437064234/2023,HA.1 +Brazil/MG-FIOCRUZ-4843/2023,HA.1 +Canada/ON-PHL-23-25187/2023,HA.1 +CanaryIslands/CHUIMI-021437058718/2023,HA.1 +Canada/ON-PHL-23-25350/2023,HA.1 +Canada/ON-PHL-23-25356/2023,HA.1 +Canada/ON-PHL-23-25488/2023,HA.1 +Canada/ON-PHL-23-25352/2023,HA.1 +Canada/ON-PHL-23-25347/2023,HA.1 +Canada/ON-PHL-23-25491/2023,HA.1 +Canada/ON-PHL-23-25358/2023,HA.1 +Canada/ON-PHL-23-25030/2023,HA.1 +Canada/ON-PHL-23-25019/2023,HA.1 +Canada/ON-PHL-23-25031/2023,HA.1 +Canada/ON-PHL-23-25124/2023,HA.1 +Canada/ON-PHL-23-25028/2023,HA.1 +Canada/ON-PHL-23-25029/2023,HA.1 +Canada/ON-PHL-23-25275/2023,HA.1 +Canada/ON-PHL-23-25279/2023,HA.1 +Canada/ON-PHL-23-25299/2023,HA.1 +Canada/ON-PHL-23-25188/2023,HA.1 +Canada/ON-PHL-23-25627/2023,HA.1 +Canada/ON-PHL-23-25018/2023,HA.1 +Canada/ON-PHL-23-25455/2023,HA.1 +Canada/ON-PHL-23-25498/2023,HA.1 +Canada/ON-PHL-23-25271-v2/2023,HA.1 +Canada/ON-PHL-23-24939-v2/2023,HA.1 +Canada/ON-KHS-04445-v1/2023,HA.1 +Canada/ON-KHS-23-04276-v1/2023,HA.1 +Brazil/MT-LACENMT-510510315/2023,HA.1 +Brazil/MT-LACENMT-510510314/2023,HA.1 +Brazil/MT-LACENMT-510510322/2023,HA.1 +Brazil/MT-LACENMT-510510311/2023,HA.1 +Spain/AR-HCULB-00007095/2023,HA.1 +Spain/PV-HUD-96086751/2023,HA.1 +Spain/PV-HUD-96086608/2023,HA.1 +Spain/PV-HUD-96068941/2023,HA.1 +Brazil/SC-FIOCRUZ-5152/2023,HA.1 +Brazil/SC-FIOCRUZ-4347-R2/2023,HA.1 +Brazil/SC-FIOCRUZ-5284/2023,HA.1 +Brazil/SC-FIOCRUZ-4820-R2/2023,HA.1 +Brazil/SC-FIOCRUZ-5277/2023,HA.1 +Brazil/SC-FIOCRUZ-5281/2023,HA.1 +Brazil/ES-LACENES-321418925/2023,HA.2 +BRA/LACENAL-270248447/2023,HA.2 +Brazil/BA-LACEN-BA3735-292969208/2023,HA.2 +USA/OH-PLMI-HJC5K-20050/2023,HA.2 +USA/CA-HLX-STM-ZPSYED8R3/2023,HA.2 +USA/PA-CDC-QDX80414794/2023,HA.2 +Brazil/AL-LACENAL-270249874/2023,HA.2 +BRA/LACENAL-270247198/2023,HA.2 +BRA/LACENAL-270247987/2023,HA.2 +Brazil/AL-LACENAL-270247631/2023,HA.2 +USA/NY-PRL-230427_81A10/2023,HA.2 +BRA/LACENAL-270247631/2023,HA.2 +Brazil/AL-LACENAL-270247986/2023,HA.2 +Japan/TKYnat14118/2023,HA.2 +USA/NJ-CDC-QDX49773406/2023,HA.2 +BRA/LACENAL-270247196/2023,HA.2 +Brazil/AL-LACENAL-270249420/2023,HA.2 +BRA/LACENAL-270249420/2023,HA.2 +Brazil/AL-LACENAL-270249901/2023,HA.2 +BRA/LACENAL-270247194/2023,HA.2 +BRA/LACENAL-270248453/2023,HA.2 +Brazil/AL-LACENAL-270248453/2023,HA.2 +Brazil/AL-LACENAL-270249411/2023,HA.2 +BRA/LACENAL-270249411/2023,HA.2 +USA/IN-CDC-QDX80512818/2023,HA.2 +USA/NY-CDC-QDX80462643/2023,HA.2 +USA/NY-CDC-QDX80462528/2023,HA.2 +USA/NY-CDC-QDX81183352/2023,HA.2 +USA/NY-NYULH-15006/2023,HA.2 +USA/OH-IVY-G43Q63C3/2023,HA.2 +USA/NY-CDC-QDX80733845/2023,HA.2 +USA/CT-YPL23-1696/2023,HA.2 +USA/NV-CDC-QDX80783960/2023,HA.2 +USA/OH-PLMI-HJGT7-20111/2023,HA.2 +USA/OH-PLMI-HJC5K-20061/2023,HA.2 +Brazil/AL-LACENAL-270246760/2023,HA.2 +Brazil/AL-LACENAL-270246757/2023,HA.2 +BRA/LACENAL-270248964/2023,HA.2 +Brazil/AL-LACENAL-270248961/2023,HA.2 +Brazil/AL-LACENAL-270248446/2023,HA.2 +BRA/LACENAL-270248975/2023,HA.2 +Brazil/AL-LACENAL-270248974/2023,HA.2 +BRA/LACENAL-270248978/2023,HA.2 +Brazil/MT-LACENAL-270248977/2023,HA.2 diff --git a/pango_designation/alias_key.json b/pango_designation/alias_key.json index c2682af0..6dcff466 100644 --- a/pango_designation/alias_key.json +++ b/pango_designation/alias_key.json @@ -177,6 +177,7 @@ "GW": "XBB.1.19.1", "GY": "XBB.1.16.2", "GZ": "XBB.2.3.4", + "HA": "XBB.1.5.86", "XA": ["B.1.1.7","B.1.177"], "XB": ["B.1.634","B.1.631"], "XC": ["AY.29","B.1.1.7"],