From ee0c54ca70a56859f5d165a1d35941b297bc951e Mon Sep 17 00:00:00 2001 From: Cornelius Roemer Date: Tue, 6 Jun 2023 17:30:06 +0200 Subject: [PATCH] Designate XBB.1.34.2 (S:K182I, ORF8:C90F, ORF1a:G989C) with 10 seqs --- lineage_notes.txt | 1 + lineages.csv | 30 +++++++++++++++--------------- 2 files changed, 16 insertions(+), 15 deletions(-) diff --git a/lineage_notes.txt b/lineage_notes.txt index 13e83163..3741a3de 100644 --- a/lineage_notes.txt +++ b/lineage_notes.txt @@ -2858,6 +2858,7 @@ XBB.1.32.1 S:Y453F, ORF1a:L642F, ORF1b:L2497I, Philippines/Thailand, from #1908 XBB.1.33 Defined by S:A376T, found mainly in Italy, from pango-designation issue #1879 XBB.1.34 S:486P,S:681R, N:A50V, Uganda/Sudan, from pango-designation issue #1621 XBB.1.34.1 S:E554K, ORF1b:P970L +XBB.1.34.2 S:K182I, ORF8:C90F, ORF1a:G989C XBB.1.35 ORF1a:V89A, Indonesia XBB.1.36 Defined by S:S490P, found mainly in Malaysia, Indonesia and Singapore, from pango-designation issue #1781 XBB.1.37 Defined by A5371G, Indonesia/Russia diff --git a/lineages.csv b/lineages.csv index 24f2af36..76f457c9 100644 --- a/lineages.csv +++ b/lineages.csv @@ -2415491,21 +2415491,6 @@ Sweden/100972/2023,XBB.1.34 Sweden/101037/2023,XBB.1.34 Sweden/01_SE100_23CS100821/2023,XBB.1.34 Sweden/100948/2023,XBB.1.34 -Denmark/DCGC-645409/2023,XBB.1.34 -Denmark/DCGC-645602/2023,XBB.1.34 -Denmark/DCGC-645014/2023,XBB.1.34 -Denmark/DCGC-645319/2023,XBB.1.34 -USA/WI-MHDL-050074/2023,XBB.1.34 -CHN/ZYSCDC-YJ20230204/2023,XBB.1.34 -Sichuan/ZYSCDC-YJ0204/2023,XBB.1.34 -USA/CA-CDC-QDX80348100/2023,XBB.1.34 -USA/CA-HLX-STM-6YKNXWX2Q/2023,XBB.1.34 -Netherlands/UT-RIVM-129997/2023,XBB.1.34 -USA/CO-CDC-VSX-A065839/2023,XBB.1.34 -Shanghai/SCDC-HG0508-587/2023,XBB.1.34 -CHN/SH-HG20230508-587/2023,XBB.1.34 -Shanghai/SCDC-HG0508-607/2023,XBB.1.34 -CHN/SH-HG20230508-607/2023,XBB.1.34 Sudan/BC63_04032023/2023,XBB.1.34 Sudan/BC64_04032023/2023,XBB.1.34 Australia/NSW-ICPMR-45328/2023,XBB.1.34.1 @@ -2415532,3 +2415517,18 @@ England/QEUH-32700D18/2023,XBB.1.34.1 England/PHEC-YYE4N5K/2023,XBB.1.34.1 England/PHEC-YYE4KMD/2023,XBB.1.34.1 England/PHEC-YYE4NHE/2023,XBB.1.34.1 +Denmark/DCGC-645409/2023,XBB.1.34.2 +Denmark/DCGC-645602/2023,XBB.1.34.2 +Denmark/DCGC-645014/2023,XBB.1.34.2 +Denmark/DCGC-645319/2023,XBB.1.34.2 +USA/WI-MHDL-050074/2023,XBB.1.34.2 +CHN/ZYSCDC-YJ20230204/2023,XBB.1.34.2 +Sichuan/ZYSCDC-YJ0204/2023,XBB.1.34.2 +USA/CA-CDC-QDX80348100/2023,XBB.1.34.2 +USA/CA-HLX-STM-6YKNXWX2Q/2023,XBB.1.34.2 +Netherlands/UT-RIVM-129997/2023,XBB.1.34.2 +USA/CO-CDC-VSX-A065839/2023,XBB.1.34.2 +Shanghai/SCDC-HG0508-587/2023,XBB.1.34.2 +CHN/SH-HG20230508-587/2023,XBB.1.34.2 +Shanghai/SCDC-HG0508-607/2023,XBB.1.34.2 +CHN/SH-HG20230508-607/2023,XBB.1.34.2