From f0582e1e6f6b2bfd1764625dc02920263f94774e Mon Sep 17 00:00:00 2001 From: Cornelius Roemer Date: Sun, 9 Jul 2023 16:42:24 +0200 Subject: [PATCH] Designate CJ.1.3.2 (S:D936H, South Korea) with 200 seqs --- lineage_notes.txt | 1 + lineages.csv | 242 +++++++++++++++++++++++++++++++++++++--------- 2 files changed, 199 insertions(+), 44 deletions(-) diff --git a/lineage_notes.txt b/lineage_notes.txt index b6031074..7216870f 100644 --- a/lineage_notes.txt +++ b/lineage_notes.txt @@ -843,6 +843,7 @@ CJ.1.1 Alias of B.1.1.529.2.75.3.1.1.1.1.1, S:V445A, Singapore/Malaysia/Japan, f CJ.1.2 Alias of B.1.1.529.2.75.3.1.1.1.1.2, ORF1a:L2609F, Sweden/France/England CJ.1.3 Alias of B.1.1.529.2.75.3.1.1.1.1.3, A261G reversion, G4960A, C14790T, South Korea CJ.1.3.1 Alias of B.1.1.529.2.75.3.1.1.1.1.3.1, S:R214S, ORF1a:G3578S, South Korea/Japan +CJ.1.3.2 Alias of B.1.1.529.2.75.3.1.1.1.1.3.2, S:D936H, South Korea BM.1.1.2 Alias of B.1.1.529.2.75.3.1.1.2, England, S:T883I, S:S939F, S:P1079T BM.1.1.3 Alias of B.1.1.529.2.75.3.1.1.3, India, defined by ORF10:A8V CV.1 Alias of B.1.1.529.2.75.3.1.1.3.1, Ireland, S:L452R diff --git a/lineages.csv b/lineages.csv index d044424b..556bcbb0 100644 --- a/lineages.csv +++ b/lineages.csv @@ -2356419,50 +2356419,6 @@ Canada/ON-PHL-23-04476/2023,CJ.1.3 Canada/ON-PHL-23-05114/2023,CJ.1.3 NewZealand/23YA1281/2023,CJ.1.3 Canada/ON-PHL-11779/2023,CJ.1.3 -SouthKorea/KDCA168412/2022,CJ.1.3 -SouthKorea/KDCA181660/2022,CJ.1.3 -SouthKorea/KDCA175729/2022,CJ.1.3 -SouthKorea/KDCA181552/2022,CJ.1.3 -SouthKorea/KDCA189416/2022,CJ.1.3 -SouthKorea/KDCA189675/2022,CJ.1.3 -SouthKorea/KDCA-196032/2023,CJ.1.3 -SouthKorea/KDCA195210/2022,CJ.1.3 -SouthKorea/KDCA219806/2023,CJ.1.3 -SouthKorea/KDCA213674/2023,CJ.1.3 -SouthKorea/KDCA164471/2022,CJ.1.3 -SouthKorea/KDCA221753/2023,CJ.1.3 -SouthKorea/KDCA175147/2022,CJ.1.3 -SouthKorea/KDCA218126/2023,CJ.1.3 -SouthKorea/KDCA219500/2023,CJ.1.3 -SouthKorea/KDCA179253/2022,CJ.1.3 -SouthKorea/KDCA164446/2022,CJ.1.3 -SouthKorea/KDCA213031/2023,CJ.1.3 -SouthKorea/KDCA212950/2023,CJ.1.3 -SouthKorea/KDCA203993/2023,CJ.1.3 -SouthKorea/KDCA214104/2023,CJ.1.3 -SouthKorea/KDCA205662/2023,CJ.1.3 -SouthKorea/KDCA201529/2023,CJ.1.3 -SouthKorea/KDCA180083/2022,CJ.1.3 -SouthKorea/KDCA184674/2022,CJ.1.3 -SouthKorea/KDCA213191/2023,CJ.1.3 -SouthKorea/KDCA211045/2023,CJ.1.3 -SouthKorea/KDCA189531/2022,CJ.1.3 -SouthKorea/KDCA217826/2023,CJ.1.3 -SouthKorea/KDCA185138/2022,CJ.1.3 -SouthKorea/KDCA218767/2023,CJ.1.3 -SouthKorea/KDCA214723/2023,CJ.1.3 -SouthKorea/KDCA214722/2023,CJ.1.3 -SouthKorea/KDCA217541/2023,CJ.1.3 -SouthKorea/KDCA-195480/2022,CJ.1.3 -SouthKorea/KDCA168552/2022,CJ.1.3 -SouthKorea/KDCA175161/2022,CJ.1.3 -SouthKorea/KDCA185254/2022,CJ.1.3 -SouthKorea/KDCA164519/2022,CJ.1.3 -SouthKorea/KDCA221410/2023,CJ.1.3 -SouthKorea/KDCA221415/2023,CJ.1.3 -SouthKorea/KDCA222954/2023,CJ.1.3 -SouthKorea/KDCA214659/2023,CJ.1.3 -SouthKorea/KDCA217432/2023,CJ.1.3 England/PHEC-YYEB5NZ/2023,XBF.1.1 England/PHEC-YYEY1PC/2023,XBF.1.1 England/PHEC-YYEY1AI/2023,XBF.1.1 @@ -2434148,3 +2434104,201 @@ Japan/TKYnat14024/2023,CJ.1.3.1 Japan/PG-537436/2023,CJ.1.3.1 Japan/PG-526804/2023,CJ.1.3.1 Japan/SUPCRC-5172/2023,CJ.1.3.1 +SouthKorea/KDCA203847/2023,CJ.1.3.2 +SouthKorea/KDCA201412/2023,CJ.1.3.2 +SouthKorea/KDCA216057/2023,CJ.1.3.2 +SouthKorea/KDCA195210/2022,CJ.1.3.2 +SouthKorea/KDCA-196032/2023,CJ.1.3.2 +SouthKorea/KDCA214360/2023,CJ.1.3.2 +SouthKorea/KDCA214154/2023,CJ.1.3.2 +SouthKorea/KDCA189675/2022,CJ.1.3.2 +SouthKorea/KDCA216186/2023,CJ.1.3.2 +SouthKorea/KDCA189416/2022,CJ.1.3.2 +USA/WA-UW-22121688757/2022,CJ.1.3.2 +SouthKorea/KDCA218126/2023,CJ.1.3.2 +SouthKorea/KDCA210905/2023,CJ.1.3.2 +SouthKorea/KDCA219181/2023,CJ.1.3.2 +SouthKorea/KDCA181660/2022,CJ.1.3.2 +SouthKorea/KDCA164471/2022,CJ.1.3.2 +SouthKorea/KDCA164446/2022,CJ.1.3.2 +SouthKorea/KDCA213031/2023,CJ.1.3.2 +SouthKorea/KDCA212950/2023,CJ.1.3.2 +SouthKorea/KDCA203993/2023,CJ.1.3.2 +SouthKorea/KDCA205662/2023,CJ.1.3.2 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