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1 parent 0c5eb69 commit 2292857672c25c797dbff70f935aa6fc9b56566a @cplaisier committed Jul 3, 2012
Showing with 15,069 additions and 1 deletion.
  1. +3 −1 README.md → README
  2. 0 __init__.py
  3. +14 −0 manage.py
  4. 0 network/__init__.py
  5. +107 −0 network/models.py
  6. BIN network/static/Gnomes_plan.png
  7. BIN network/static/cancerMiRNARegulatoryNetwork.gif
  8. BIN network/static/cancerMiRNARegulatoryNetwork.jpg
  9. +434 −0 network/static/cmrn.css
  10. +5,130 −0 network/static/compendium_miRNA_target_genes.csv
  11. BIN network/static/favicon.ico
  12. BIN network/static/firm/FIRM.tgz
  13. BIN network/static/hanahanWeinbergHallmarksOfCancer.gif
  14. BIN network/static/hanahanWeinbergHallmarksOfCancer.jpg
  15. +18 −0 network/static/jquery-1.6.1.min.js
  16. +4 −0 network/static/jquery.tablesorter.min.js
  17. +1 −0 network/static/js/cytoscape_web/AC_OETags.min.js
  18. +1 −0 network/static/js/cytoscape_web/cytoscapeweb.min.js
  19. +1 −0 network/static/js/cytoscape_web/json2.min.js
  20. +3,064 −0 network/static/sig_overlap_network_0.05.gml
  21. +407 −0 network/static/sig_overlap_network_0.05.sif
  22. +408 −0 network/static/sig_overlap_network_0.05_type_edge.attr
  23. +176 −0 network/static/sig_overlap_network_0.05_type_node.attr
  24. +86 −0 network/static/sig_overlap_network_0.05_validated_edge.attr
  25. BIN network/static/swf/CytoscapeWeb.swf
  26. BIN network/static/swf/playerProductInstall.swf
  27. +16 −0 network/tests.py
  28. +1,961 −0 network/views.py
  29. +160 −0 settings.py
  30. +77 −0 templates/base.html
  31. +92 −0 templates/cancer.html
  32. +52 −0 templates/citation.html
  33. +141 −0 templates/cluster.html
  34. +79 −0 templates/compendium.html
  35. +30 −0 templates/count_em.html
  36. +32 −0 templates/count_em2.html
  37. +173 −0 templates/cytoscape_web.html
  38. +67 −0 templates/dataset.html
  39. +112 −0 templates/firm.html
  40. +47 −0 templates/go_term_list_genes.html
  41. +95 −0 templates/hallmark.html
  42. +20 −0 templates/help.html
  43. +1,429 −0 templates/index.html
  44. +62 −0 templates/inference.html
  45. +44 −0 templates/list_go_terms.html
  46. +47 −0 templates/miRNA.html
  47. +62 −0 templates/miRNA_and_GO_term.html
  48. +62 −0 templates/miRNA_list_genes.html
  49. +65 −0 templates/overlap.html
  50. +98 −0 templates/overlapping.html
  51. +33 −0 templates/overlapping_mirna.html
  52. +56 −0 templates/overlapping_mirna_go.html
  53. +45 −0 templates/specific_miRNA.html
  54. +58 −0 urls.py
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4 README.md → README
@@ -1,4 +1,6 @@
Cancer-miRNA-Regulatory-Network
===============================
-A database containing the predictions for the Cancer miRNA-Regulatory Network.
+A database containing the predictions for the Cancer miRNA-Regulatory Network.
+
+This application was developed using Django, Python and PosgreSQL.
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0 __init__.py
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14 manage.py
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+#!/usr/bin/env python
+from django.core.management import execute_manager
+import imp
+try:
+ imp.find_module('settings') # Assumed to be in the same directory.
+except ImportError:
+ import sys
+ sys.stderr.write("Error: Can't find the file 'settings.py' in the directory containing %r. It appears you've customized things.\nYou'll have to run django-admin.py, passing it your settings module.\n" % __file__)
+ sys.exit(1)
+
+import settings
+
+if __name__ == "__main__":
+ execute_manager(settings)
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0 network/__init__.py
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107 network/models.py
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+from django.db import models
+
+class Cancer(models.Model):
+ name = models.CharField(max_length=200)
+ short_name = models.CharField(max_length=100)
+ publication = models.CharField(max_length=200)
+ pmid = models.IntegerField()
+ tissue = models.CharField(max_length=100)
+
+ def __unicode__(self):
+ return self.short_name
+
+class Gene(models.Model):
+ entrez_id = models.IntegerField()
+
+ def __unicode__(self):
+ return str(self.entrez_id)
+
+class Coexpression_Cluster(models.Model):
+ cancer = models.ForeignKey(Cancer)
+ number = models.IntegerField()
+ cluster_membership = models.ManyToManyField(Gene)
+
+ def __unicode__(self):
+ return self.cancer.__unicode__()+'.'+str(self.number)
+
+class MiRNA(models.Model):
+ name = models.CharField(max_length=100)
+ mature_sequence_id = models.CharField(max_length=100)
+ mature_sequence = models.CharField(max_length=100)
+ pita_targets = models.ManyToManyField(Gene, related_name='MiRNAtoPITA')
+ targetscan_targets = models.ManyToManyField(Gene,related_name='MiRNAtoTargetScan')
+
+ def __unicode__(self):
+ return self.name
+
+class Validation(models.Model):
+ cancer = models.ForeignKey(Cancer)
+ mirna = models.ForeignKey(MiRNA)
+ method = models.CharField(max_length=100)
+
+ def __unicode__(self):
+ return self.method+'.'+self.cancer.__unicode__()+'.'+self.mirna.__unicode__()
+
+class Inferred_MiRNA(models.Model):
+ coexpression_cluster = models.ForeignKey(Coexpression_Cluster)
+ mirna = models.ForeignKey(MiRNA)
+ method = models.CharField(max_length=100)
+ target_genes = models.ManyToManyField(Gene, through='Target_Gene')
+
+ def __unicode__(self):
+ return self.coexpression_cluster.__unicode__()+'-'+self.mirna.__unicode__()
+
+class Gene_Ontology(models.Model):
+ go_id = models.CharField(max_length=100)
+ term = models.CharField(max_length=500)
+ category = models.CharField(max_length=100)
+ annotated_genes = models.ManyToManyField(Gene)
+
+ def __unicode__(self):
+ return self.go_id
+
+class Functional_Enrichment(models.Model):
+ coexpression_cluster = models.ForeignKey(Coexpression_Cluster)
+ gene_ontology = models.ForeignKey(Gene_Ontology)
+ annotated_genes = models.ManyToManyField(Gene)
+
+ def __unicode__(self):
+ return self.coexpression_cluster.__unicode__()+'-'+self.gene_ontology.__unicode__()
+
+class Target_Gene(models.Model):
+ inferred_mirna = models.ForeignKey(Inferred_MiRNA)
+ gene = models.ForeignKey(Gene)
+ strand = models.CharField(max_length=10)
+ site = models.CharField(max_length=10)
+ start = models.IntegerField()
+ match = models.FloatField()
+
+ def __unicode__(self):
+ return self.inferred_mirna.__unicode__()+' '+self.gene.__unicode__()
+
+class Gene_Annotation(models.Model):
+ gene = models.ForeignKey(Gene)
+ category = models.CharField(max_length=100)
+ annotation = models.CharField(max_length=1000)
+
+ def __unicode__(self):
+ return str(self.gene.entrez_id)+' = '+self.annotation
+
+class Hallmarks_Of_Cancer(models.Model):
+ coexpression_cluster = models.ForeignKey(Coexpression_Cluster)
+ hallmark_of_cancer = models.CharField(max_length=1000)
+ semantic_similarity = models.FloatField()
+
+ def __unicode__(self):
+ return self.coexpression_cluster.__unicode__()+' '+self.hallmark_of_cancer+'='+str(self.semantic_similarity)
+
+class MiRNA_Target_GO_Term_Overlap(models.Model):
+ coexpression_cluster = models.ForeignKey(Coexpression_Cluster)
+ inferred_mirna = models.ForeignKey(Inferred_MiRNA)
+ functional_enrichment = models.ForeignKey(Functional_Enrichment)
+ p_value = models.FloatField()
+ genes_overlapping = models.ManyToManyField(Gene)
+
+ def __unicode__(self):
+ return self.coexpression_cluster.__unicode__()+' '+self.inferred_mirna.__unicode__()+' '+self.gene_ontology.__unicode__()
+
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BIN network/static/Gnomes_plan.png
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BIN network/static/cancerMiRNARegulatoryNetwork.gif
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434 network/static/cmrn.css
@@ -0,0 +1,434 @@
+body{
+ background-color: #ffffff;
+ font-family: Arial, Verdana, Helvetica, sans-serif;
+ color: #000000;
+ text-align: center;
+ /* min-width:600px; */
+ width: 100%;
+ margin: 0;
+ padding: 0;
+ border: 0;
+}
+.mc_ul {
+ width: 45em;
+}
+.mc_li {
+ float:left;
+ width:15em;
+}
+.cl_br {
+ clear: left;
+}
+ol_bold {
+ font-weight: bold;
+}
+ol span {
+ font-weight: normal;
+}
+.center {
+ align: center;
+ width: 100%;
+}
+.center1 {
+ text-align: center;
+ font-size: 120%;
+ font-weight: bold;
+}
+.center2 {
+ text-align: center;
+ font-size: 120%;
+ font-weight: bold;
+ width: 40%;
+}
+.tableft {
+ background-color: #225588;
+ color: #ffffff;
+ border-top-left-radius: 15px;
+ -moz-border-radius-topleft: 15px;
+ -webkit-border-radius-topleft: 15px;
+ vertical-align: middle;
+ text-align: center;
+}
+.tabmid {
+ background-color: #225588;
+ color: #ffffff;
+ vertical-align: middle;
+ text-align: center;
+}
+.tabright {
+ background-color: #225588;
+ color: #ffffff;
+ border-top-right-radius: 15px;
+ -moz-border-radius-topright: 15px;
+ -webkit-border-radius-topright: 15px;
+ vertical-align: middle;
+ text-align: center;
+}
+.tab {
+ /* background-color: #225588; */
+ background-color: #225588;
+ color: #ffffff;
+ border-top-left-radius: 15px;
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+ vertical-align: middle;
+ text-align: center;
+}
+.bottomtab {
+ border-color: #225588;
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+ color: #ffffff;
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+ -webkit-border-radius-bottomright: 15px;
+ vertical-align: middle;
+ text-align: center;
+}
+.header {
+ background-color: #aa0000;
+ color: #ffffff;
+ border-radius: 15px;
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+}
+
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+ padding: 10px 10px 10px 10px;
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+ text-align: center;
+ width: 250px;
+}
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+ color: #ffffff;
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+}
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+ background-color: #225588;
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+}
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+ background-color: #cccccc;
+ color: #000000;
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+ padding: 15px;
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+ width: 100%;
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+ color: #cccccc;
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+ color: #ffffff;
+ font-weight: bold;
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+img {
+ margin:10px 0 5px;
+ border-style: none;
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+ color: #990000;
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+#header {
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+}
+/* column container */
+.colmask {
+ position:relative; /* This fixes the IE7 overflow hidden bug */
+ clear:both;
+ float:left;
+ width:100%; /* width of whole page */
+ overflow:hidden; /* This chops off any overhanging divs */
+}
+/* common column settings */
+.colright,
+.colmid,
+.colleft {
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+}
+.col1,
+.col2,
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+ position:relative;
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+.threecol .col2 {
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+ left:18%; /* width of (right column) plus (center column left and right padding) plus (left column left padding) */
+}
+.threecol .col3 {
+ width:4%; /* Width of right column content (column width minus padding on either side) */
+ left:102%; /* Please make note of the brackets here:
+ (100% - left column width) plus (center column left and right padding) plus (left column left and right padding) plus (right column left padding) */
+}
+/* Footer styles */
+#footer {
+ clear:both;
+ float:left;
+ width:100%;
+}
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5,130 network/static/compendium_miRNA_target_genes.csv
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18 network/static/jquery-1.6.1.min.js
@@ -0,0 +1,18 @@
+/*!
+ * jQuery JavaScript Library v1.6.1
+ * http://jquery.com/
+ *
+ * Copyright 2011, John Resig
+ * Dual licensed under the MIT or GPL Version 2 licenses.
+ * http://jquery.org/license
+ *
+ * Includes Sizzle.js
+ * http://sizzlejs.com/
+ * Copyright 2011, The Dojo Foundation
+ * Released under the MIT, BSD, and GPL Licenses.
+ *
+ * Date: Thu May 12 15:04:36 2011 -0400
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a=f.timers,c=a.length;b||f._unmark(!0,this);while(c--)a[c].elem===this&&(b&&a[c](!0),a.splice(c,1))}),b||this.dequeue();return this}}),f.each({slideDown:cu("show",1),slideUp:cu("hide",1),slideToggle:cu("toggle",1),fadeIn:{opacity:"show"},fadeOut:{opacity:"hide"},fadeToggle:{opacity:"toggle"}},function(a,b){f.fn[a]=function(a,c,d){return this.animate(b,a,c,d)}}),f.extend({speed:function(a,b,c){var d=a&&typeof a=="object"?f.extend({},a):{complete:c||!c&&b||f.isFunction(a)&&a,duration:a,easing:c&&b||b&&!f.isFunction(b)&&b};d.duration=f.fx.off?0:typeof d.duration=="number"?d.duration:d.duration in f.fx.speeds?f.fx.speeds[d.duration]:f.fx.speeds._default,d.old=d.complete,d.complete=function(a){d.queue!==!1?f.dequeue(this):a!==!1&&f._unmark(this),f.isFunction(d.old)&&d.old.call(this)};return d},easing:{linear:function(a,b,c,d){return c+d*a},swing:function(a,b,c,d){return(-Math.cos(a*Math.PI)/2+.5)*d+c}},timers:[],fx:function(a,b,c){this.options=b,this.elem=a,this.prop=c,b.orig=b.orig||{}}}),f.fx.prototype={update:function(){this.options.step&&this.options.step.call(this.elem,this.now,this),(f.fx.step[this.prop]||f.fx.step._default)(this)},cur:function(){if(this.elem[this.prop]!=null&&(!this.elem.style||this.elem.style[this.prop]==null))return this.elem[this.prop];var a,b=f.css(this.elem,this.prop);return isNaN(a=parseFloat(b))?!b||b==="auto"?0:b:a},custom:function(a,b,c){function h(a){return d.step(a)}var d=this,e=f.fx,g;this.startTime=cq||cs(),this.start=a,this.end=b,this.unit=c||this.unit||(f.cssNumber[this.prop]?"":"px"),this.now=this.start,this.pos=this.state=0,h.elem=this.elem,h()&&f.timers.push(h)&&!co&&(cr?(co=1,g=function(){co&&(cr(g),e.tick())},cr(g)):co=setInterval(e.tick,e.interval))},show:function(){this.options.orig[this.prop]=f.style(this.elem,this.prop),this.options.show=!0,this.custom(this.prop==="width"||this.prop==="height"?1:0,this.cur()),f(this.elem).show()},hide:function(){this.options.orig[this.prop]=f.style(this.elem,this.prop),this.options.hide=!0,this.custom(this.cur(),0)},step:function(a){var b=cq||cs(),c=!0,d=this.elem,e=this.options,g,h;if(a||b>=e.duration+this.startTime){this.now=this.end,this.pos=this.state=1,this.update(),e.animatedProperties[this.prop]=!0;for(g in e.animatedProperties)e.animatedProperties[g]!==!0&&(c=!1);if(c){e.overflow!=null&&!f.support.shrinkWrapBlocks&&f.each(["","X","Y"],function(a,b){d.style["overflow"+b]=e.overflow[a]}),e.hide&&f(d).hide();if(e.hide||e.show)for(var i in e.animatedProperties)f.style(d,i,e.orig[i]);e.complete.call(d)}return!1}e.duration==Infinity?this.now=b:(h=b-this.startTime,this.state=h/e.duration,this.pos=f.easing[e.animatedProperties[this.prop]](this.state,h,0,1,e.duration),this.now=this.start+(this.end-this.start)*this.pos),this.update();return!0}},f.extend(f.fx,{tick:function(){for(var a=f.timers,b=0;b<a.length;++b)a[b]()||a.splice(b--,1);a.length||f.fx.stop()},interval:13,stop:function(){clearInterval(co),co=null},speeds:{slow:600,fast:200,_default:400},step:{opacity:function(a){f.style(a.elem,"opacity",a.now)},_default:function(a){a.elem.style&&a.elem.style[a.prop]!=null?a.elem.style[a.prop]=(a.prop==="width"||a.prop==="height"?Math.max(0,a.now):a.now)+a.unit:a.elem[a.prop]=a.now}}}),f.expr&&f.expr.filters&&(f.expr.filters.animated=function(a){return f.grep(f.timers,function(b){return a===b.elem}).length});var cw=/^t(?:able|d|h)$/i,cx=/^(?:body|html)$/i;"getBoundingClientRect"in c.documentElement?f.fn.offset=function(a){var b=this[0],c;if(a)return this.each(function(b){f.offset.setOffset(this,a,b)});if(!b||!b.ownerDocument)return null;if(b===b.ownerDocument.body)return f.offset.bodyOffset(b);try{c=b.getBoundingClientRect()}catch(d){}var e=b.ownerDocument,g=e.documentElement;if(!c||!f.contains(g,b))return c?{top:c.top,left:c.left}:{top:0,left:0};var h=e.body,i=cy(e),j=g.clientTop||h.clientTop||0,k=g.clientLeft||h.clientLeft||0,l=i.pageYOffset||f.support.boxModel&&g.scrollTop||h.scrollTop,m=i.pageXOffset||f.support.boxModel&&g.scrollLeft||h.scrollLeft,n=c.top+l-j,o=c.left+m-k;return{top:n,left:o}}:f.fn.offset=function(a){var b=this[0];if(a)return this.each(function(b){f.offset.setOffset(this,a,b)});if(!b||!b.ownerDocument)return null;if(b===b.ownerDocument.body)return f.offset.bodyOffset(b);f.offset.initialize();var c,d=b.offsetParent,e=b,g=b.ownerDocument,h=g.documentElement,i=g.body,j=g.defaultView,k=j?j.getComputedStyle(b,null):b.currentStyle,l=b.offsetTop,m=b.offsetLeft;while((b=b.parentNode)&&b!==i&&b!==h){if(f.offset.supportsFixedPosition&&k.position==="fixed")break;c=j?j.getComputedStyle(b,null):b.currentStyle,l-=b.scrollTop,m-=b.scrollLeft,b===d&&(l+=b.offsetTop,m+=b.offsetLeft,f.offset.doesNotAddBorder&&(!f.offset.doesAddBorderForTableAndCells||!cw.test(b.nodeName))&&(l+=parseFloat(c.borderTopWidth)||0,m+=parseFloat(c.borderLeftWidth)||0),e=d,d=b.offsetParent),f.offset.subtractsBorderForOverflowNotVisible&&c.overflow!=="visible"&&(l+=parseFloat(c.borderTopWidth)||0,m+=parseFloat(c.borderLeftWidth)||0),k=c}if(k.position==="relative"||k.position==="static")l+=i.offsetTop,m+=i.offsetLeft;f.offset.supportsFixedPosition&&k.position==="fixed"&&(l+=Math.max(h.scrollTop,i.scrollTop),m+=Math.max(h.scrollLeft,i.scrollLeft));return{top:l,left:m}},f.offset={initialize:function(){var a=c.body,b=c.createElement("div"),d,e,g,h,i=parseFloat(f.css(a,"marginTop"))||0,j="<div style='position:absolute;top:0;left:0;margin:0;border:5px solid #000;padding:0;width:1px;height:1px;'><div></div></div><table style='position:absolute;top:0;left:0;margin:0;border:5px solid #000;padding:0;width:1px;height:1px;' cellpadding='0' cellspacing='0'><tr><td></td></tr></table>";f.extend(b.style,{position:"absolute",top:0,left:0,margin:0,border:0,width:"1px",height:"1px",visibility:"hidden"}),b.innerHTML=j,a.insertBefore(b,a.firstChild),d=b.firstChild,e=d.firstChild,h=d.nextSibling.firstChild.firstChild,this.doesNotAddBorder=e.offsetTop!==5,this.doesAddBorderForTableAndCells=h.offsetTop===5,e.style.position="fixed",e.style.top="20px",this.supportsFixedPosition=e.offsetTop===20||e.offsetTop===15,e.style.position=e.style.top="",d.style.overflow="hidden",d.style.position="relative",this.subtractsBorderForOverflowNotVisible=e.offsetTop===-5,this.doesNotIncludeMarginInBodyOffset=a.offsetTop!==i,a.removeChild(b),f.offset.initialize=f.noop},bodyOffset:function(a){var b=a.offsetTop,c=a.offsetLeft;f.offset.initialize(),f.offset.doesNotIncludeMarginInBodyOffset&&(b+=parseFloat(f.css(a,"marginTop"))||0,c+=parseFloat(f.css(a,"marginLeft"))||0);return{top:b,left:c}},setOffset:function(a,b,c){var d=f.css(a,"position");d==="static"&&(a.style.position="relative");var e=f(a),g=e.offset(),h=f.css(a,"top"),i=f.css(a,"left"),j=(d==="absolute"||d==="fixed")&&f.inArray("auto",[h,i])>-1,k={},l={},m,n;j?(l=e.position(),m=l.top,n=l.left):(m=parseFloat(h)||0,n=parseFloat(i)||0),f.isFunction(b)&&(b=b.call(a,c,g)),b.top!=null&&(k.top=b.top-g.top+m),b.left!=null&&(k.left=b.left-g.left+n),"using"in b?b.using.call(a,k):e.css(k)}},f.fn.extend({position:function(){if(!this[0])return null;var a=this[0],b=this.offsetParent(),c=this.offset(),d=cx.test(b[0].nodeName)?{top:0,left:0}:b.offset();c.top-=parseFloat(f.css(a,"marginTop"))||0,c.left-=parseFloat(f.css(a,"marginLeft"))||0,d.top+=parseFloat(f.css(b[0],"borderTopWidth"))||0,d.left+=parseFloat(f.css(b[0],"borderLeftWidth"))||0;return{top:c.top-d.top,left:c.left-d.left}},offsetParent:function(){return this.map(function(){var a=this.offsetParent||c.body;while(a&&!cx.test(a.nodeName)&&f.css(a,"position")==="static")a=a.offsetParent;return a})}}),f.each(["Left","Top"],function(a,c){var d="scroll"+c;f.fn[d]=function(c){var e,g;if(c===b){e=this[0];if(!e)return null;g=cy(e);return g?"pageXOffset"in g?g[a?"pageYOffset":"pageXOffset"]:f.support.boxModel&&g.document.documentElement[d]||g.document.body[d]:e[d]}return this.each(function(){g=cy(this),g?g.scrollTo(a?f(g).scrollLeft():c,a?c:f(g).scrollTop()):this[d]=c})}}),f.each(["Height","Width"],function(a,c){var d=c.toLowerCase();f.fn["inner"+c]=function(){return this[0]?parseFloat(f.css(this[0],d,"padding")):null},f.fn["outer"+c]=function(a){return this[0]?parseFloat(f.css(this[0],d,a?"margin":"border")):null},f.fn[d]=function(a){var e=this[0];if(!e)return a==null?null:this;if(f.isFunction(a))return this.each(function(b){var c=f(this);c[d](a.call(this,b,c[d]()))});if(f.isWindow(e)){var g=e.document.documentElement["client"+c];return e.document.compatMode==="CSS1Compat"&&g||e.document.body["client"+c]||g}if(e.nodeType===9)return 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View
4 network/static/jquery.tablesorter.min.js
@@ -0,0 +1,4 @@
+
+(function($){$.extend({tablesorter:new
+function(){var parsers=[],widgets=[];this.defaults={cssHeader:"header",cssAsc:"headerSortUp",cssDesc:"headerSortDown",cssChildRow:"expand-child",sortInitialOrder:"asc",sortMultiSortKey:"shiftKey",sortForce:null,sortAppend:null,sortLocaleCompare:true,textExtraction:"simple",parsers:{},widgets:[],widgetZebra:{css:["even","odd"]},headers:{},widthFixed:false,cancelSelection:true,sortList:[],headerList:[],dateFormat:"us",decimal:'/\.|\,/g',onRenderHeader:null,selectorHeaders:'thead th',debug:false};function benchmark(s,d){log(s+","+(new Date().getTime()-d.getTime())+"ms");}this.benchmark=benchmark;function log(s){if(typeof console!="undefined"&&typeof console.debug!="undefined"){console.log(s);}else{alert(s);}}function buildParserCache(table,$headers){if(table.config.debug){var parsersDebug="";}if(table.tBodies.length==0)return;var rows=table.tBodies[0].rows;if(rows[0]){var list=[],cells=rows[0].cells,l=cells.length;for(var i=0;i<l;i++){var p=false;if($.metadata&&($($headers[i]).metadata()&&$($headers[i]).metadata().sorter)){p=getParserById($($headers[i]).metadata().sorter);}else if((table.config.headers[i]&&table.config.headers[i].sorter)){p=getParserById(table.config.headers[i].sorter);}if(!p){p=detectParserForColumn(table,rows,-1,i);}if(table.config.debug){parsersDebug+="column:"+i+" parser:"+p.id+"\n";}list.push(p);}}if(table.config.debug){log(parsersDebug);}return list;};function detectParserForColumn(table,rows,rowIndex,cellIndex){var l=parsers.length,node=false,nodeValue=false,keepLooking=true;while(nodeValue==''&&keepLooking){rowIndex++;if(rows[rowIndex]){node=getNodeFromRowAndCellIndex(rows,rowIndex,cellIndex);nodeValue=trimAndGetNodeText(table.config,node);if(table.config.debug){log('Checking if value was empty on row:'+rowIndex);}}else{keepLooking=false;}}for(var i=1;i<l;i++){if(parsers[i].is(nodeValue,table,node)){return parsers[i];}}return parsers[0];}function getNodeFromRowAndCellIndex(rows,rowIndex,cellIndex){return rows[rowIndex].cells[cellIndex];}function trimAndGetNodeText(config,node){return $.trim(getElementText(config,node));}function getParserById(name){var l=parsers.length;for(var i=0;i<l;i++){if(parsers[i].id.toLowerCase()==name.toLowerCase()){return parsers[i];}}return false;}function buildCache(table){if(table.config.debug){var cacheTime=new Date();}var totalRows=(table.tBodies[0]&&table.tBodies[0].rows.length)||0,totalCells=(table.tBodies[0].rows[0]&&table.tBodies[0].rows[0].cells.length)||0,parsers=table.config.parsers,cache={row:[],normalized:[]};for(var i=0;i<totalRows;++i){var c=$(table.tBodies[0].rows[i]),cols=[];if(c.hasClass(table.config.cssChildRow)){cache.row[cache.row.length-1]=cache.row[cache.row.length-1].add(c);continue;}cache.row.push(c);for(var j=0;j<totalCells;++j){cols.push(parsers[j].format(getElementText(table.config,c[0].cells[j]),table,c[0].cells[j]));}cols.push(cache.normalized.length);cache.normalized.push(cols);cols=null;};if(table.config.debug){benchmark("Building cache for "+totalRows+" rows:",cacheTime);}return cache;};function getElementText(config,node){var text="";if(!node)return"";if(!config.supportsTextContent)config.supportsTextContent=node.textContent||false;if(config.textExtraction=="simple"){if(config.supportsTextContent){text=node.textContent;}else{if(node.childNodes[0]&&node.childNodes[0].hasChildNodes()){text=node.childNodes[0].innerHTML;}else{text=node.innerHTML;}}}else{if(typeof(config.textExtraction)=="function"){text=config.textExtraction(node);}else{text=$(node).text();}}return text;}function appendToTable(table,cache){if(table.config.debug){var appendTime=new Date()}var c=cache,r=c.row,n=c.normalized,totalRows=n.length,checkCell=(n[0].length-1),tableBody=$(table.tBodies[0]),rows=[];for(var i=0;i<totalRows;i++){var pos=n[i][checkCell];rows.push(r[pos]);if(!table.config.appender){var l=r[pos].length;for(var j=0;j<l;j++){tableBody[0].appendChild(r[pos][j]);}}}if(table.config.appender){table.config.appender(table,rows);}rows=null;if(table.config.debug){benchmark("Rebuilt table:",appendTime);}applyWidget(table);setTimeout(function(){$(table).trigger("sortEnd");},0);};function buildHeaders(table){if(table.config.debug){var time=new Date();}var meta=($.metadata)?true:false;var header_index=computeTableHeaderCellIndexes(table);$tableHeaders=$(table.config.selectorHeaders,table).each(function(index){this.column=header_index[this.parentNode.rowIndex+"-"+this.cellIndex];this.order=formatSortingOrder(table.config.sortInitialOrder);this.count=this.order;if(checkHeaderMetadata(this)||checkHeaderOptions(table,index))this.sortDisabled=true;if(checkHeaderOptionsSortingLocked(table,index))this.order=this.lockedOrder=checkHeaderOptionsSortingLocked(table,index);if(!this.sortDisabled){var $th=$(this).addClass(table.config.cssHeader);if(table.config.onRenderHeader)table.config.onRenderHeader.apply($th);}table.config.headerList[index]=this;});if(table.config.debug){benchmark("Built headers:",time);log($tableHeaders);}return $tableHeaders;};function computeTableHeaderCellIndexes(t){var matrix=[];var lookup={};var thead=t.getElementsByTagName('THEAD')[0];var trs=thead.getElementsByTagName('TR');for(var i=0;i<trs.length;i++){var cells=trs[i].cells;for(var j=0;j<cells.length;j++){var c=cells[j];var rowIndex=c.parentNode.rowIndex;var cellId=rowIndex+"-"+c.cellIndex;var rowSpan=c.rowSpan||1;var colSpan=c.colSpan||1
+var firstAvailCol;if(typeof(matrix[rowIndex])=="undefined"){matrix[rowIndex]=[];}for(var k=0;k<matrix[rowIndex].length+1;k++){if(typeof(matrix[rowIndex][k])=="undefined"){firstAvailCol=k;break;}}lookup[cellId]=firstAvailCol;for(var k=rowIndex;k<rowIndex+rowSpan;k++){if(typeof(matrix[k])=="undefined"){matrix[k]=[];}var matrixrow=matrix[k];for(var l=firstAvailCol;l<firstAvailCol+colSpan;l++){matrixrow[l]="x";}}}}return lookup;}function checkCellColSpan(table,rows,row){var arr=[],r=table.tHead.rows,c=r[row].cells;for(var i=0;i<c.length;i++){var cell=c[i];if(cell.colSpan>1){arr=arr.concat(checkCellColSpan(table,headerArr,row++));}else{if(table.tHead.length==1||(cell.rowSpan>1||!r[row+1])){arr.push(cell);}}}return arr;};function checkHeaderMetadata(cell){if(($.metadata)&&($(cell).metadata().sorter===false)){return true;};return false;}function checkHeaderOptions(table,i){if((table.config.headers[i])&&(table.config.headers[i].sorter===false)){return true;};return false;}function checkHeaderOptionsSortingLocked(table,i){if((table.config.headers[i])&&(table.config.headers[i].lockedOrder))return table.config.headers[i].lockedOrder;return false;}function applyWidget(table){var c=table.config.widgets;var l=c.length;for(var i=0;i<l;i++){getWidgetById(c[i]).format(table);}}function getWidgetById(name){var l=widgets.length;for(var i=0;i<l;i++){if(widgets[i].id.toLowerCase()==name.toLowerCase()){return widgets[i];}}};function formatSortingOrder(v){if(typeof(v)!="Number"){return(v.toLowerCase()=="desc")?1:0;}else{return(v==1)?1:0;}}function isValueInArray(v,a){var l=a.length;for(var i=0;i<l;i++){if(a[i][0]==v){return true;}}return false;}function setHeadersCss(table,$headers,list,css){$headers.removeClass(css[0]).removeClass(css[1]);var h=[];$headers.each(function(offset){if(!this.sortDisabled){h[this.column]=$(this);}});var l=list.length;for(var i=0;i<l;i++){h[list[i][0]].addClass(css[list[i][1]]);}}function fixColumnWidth(table,$headers){var c=table.config;if(c.widthFixed){var colgroup=$('<colgroup>');$("tr:first td",table.tBodies[0]).each(function(){colgroup.append($('<col>').css('width',$(this).width()));});$(table).prepend(colgroup);};}function updateHeaderSortCount(table,sortList){var c=table.config,l=sortList.length;for(var i=0;i<l;i++){var s=sortList[i],o=c.headerList[s[0]];o.count=s[1];o.count++;}}function multisort(table,sortList,cache){if(table.config.debug){var sortTime=new Date();}var dynamicExp="var sortWrapper = function(a,b) {",l=sortList.length;for(var i=0;i<l;i++){var c=sortList[i][0];var order=sortList[i][1];var s=(table.config.parsers[c].type=="text")?((order==0)?makeSortFunction("text","asc",c):makeSortFunction("text","desc",c)):((order==0)?makeSortFunction("numeric","asc",c):makeSortFunction("numeric","desc",c));var e="e"+i;dynamicExp+="var "+e+" = "+s;dynamicExp+="if("+e+") { return "+e+"; } ";dynamicExp+="else { ";}var orgOrderCol=cache.normalized[0].length-1;dynamicExp+="return a["+orgOrderCol+"]-b["+orgOrderCol+"];";for(var i=0;i<l;i++){dynamicExp+="}; ";}dynamicExp+="return 0; ";dynamicExp+="}; ";if(table.config.debug){benchmark("Evaling expression:"+dynamicExp,new Date());}eval(dynamicExp);cache.normalized.sort(sortWrapper);if(table.config.debug){benchmark("Sorting on "+sortList.toString()+" and dir "+order+" time:",sortTime);}return cache;};function makeSortFunction(type,direction,index){var a="a["+index+"]",b="b["+index+"]";if(type=='text'&&direction=='asc'){return"("+a+" == "+b+" ? 0 : ("+a+" === null ? 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1 network/static/js/cytoscape_web/AC_OETags.min.js
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1 network/static/js/cytoscape_web/cytoscapeweb.min.js
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407 network/static/sig_overlap_network_0.05.sif
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+GLB Brain Sun.36 tissue_cluster Brain
+GLB Brain Sun.36 cluster_mirna hsa-mir-423-5p
+SMCL Lung Bhattacharjee.36 tissue_cluster Lung
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+hsa-mir-29b_hsa-mir-29c_hsa-mir-29a mirna_hallmark_of_cancer Self Sufficiency in Growth Signals
+hsa-mir-29b_hsa-mir-29c_hsa-mir-29a mirna_hallmark_of_cancer Insensitivity to Antigrowth Signals
+hsa-mir-29b_hsa-mir-29c_hsa-mir-29a mirna_hallmark_of_cancer Sustained Angiogenesis
+hsa-mir-29b_hsa-mir-29c_hsa-mir-29a cluster_mirna AD Lung Beer.31
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+hsa-mir-29b_hsa-mir-29c_hsa-mir-29a cluster_mirna END Ovarian Hendrix.6
+hsa-mir-29b_hsa-mir-29c_hsa-mir-29a cluster_mirna CCC Ovarian Hendrix.11
+hsa-mir-29b_hsa-mir-29c_hsa-mir-29a mirna_hallmark_of_cancer Tissue Invasion and Metastasis
+hsa-mir-920 cluster_mirna COID Lung Bhattacharjee.92
+hsa-mir-920 mirna_hallmark_of_cancer Self Sufficiency in Growth Signals
+hsa-mir-920 mirna_hallmark_of_cancer Genome Instability and Mutation
+hsa-mir-920 mirna_hallmark_of_cancer Insensitivity to Antigrowth Signals
+hsa-mir-920 mirna_hallmark_of_cancer Sustained Angiogenesis
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+SQ Lung Bhattacharjee.44 tissue_cluster Lung
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+SQ Lung Bhattacharjee.45 cluster_mirna hsa-mir-654-5p
+SQ Lung Bhattacharjee.45 tissue_cluster Lung
+hsa-mir-526b mirna_hallmark_of_cancer Evading Immune Detection
+hsa-mir-526b mirna_hallmark_of_cancer Tumor Promoting Inflammation
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+HSCC Head-Neck Chung.1 tissue_cluster Head-neck
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+hsa-mir-370 mirna_hallmark_of_cancer Genome Instability and Mutation
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+hsa-mir-370 mirna_hallmark_of_cancer Sustained Angiogenesis
+hsa-mir-370 mirna_hallmark_of_cancer Self Sufficiency in Growth Signals
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+CA Colon Graudens.35 tissue_cluster Colon
+CA Colon Graudens.35 cluster_mirna hsa-mir-325
+TU Prostate Lapointe.23 cluster_mirna hsa-mir-25
+TU Prostate Lapointe.23 tissue_cluster Prostate
+hsa-mir-548c-3p mirna_hallmark_of_cancer Self Sufficiency in Growth Signals
+hsa-mir-548c-3p mirna_hallmark_of_cancer Genome Instability and Mutation
+hsa-mir-548c-3p mirna_hallmark_of_cancer Insensitivity to Antigrowth Signals
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+hsa-mir-548c-3p mirna_hallmark_of_cancer Evading Apoptosis
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+ODGL Brain Sun.2 tissue_cluster Brain
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+ODGL Brain Sun.32 tissue_cluster Brain
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+GCT Seminoma Korkola.75 cluster_mirna hsa-mir-708_hsa-mir-25_hsa-mir-32_hsa-mir-92a_hsa-mir-92b_hsa-mir-363_hsa-mir-367_hsa-mir-664
+GCT Seminoma Korkola.75 tissue_cluster Seminoma
+hsa-let-7e_hsa-let-7f_hsa-let-7g_hsa-let-7a_hsa-let-7b_hsa-let-7d_hsa-let-7i_hsa-mir-98_hsa-let-7c mirna_hallmark_of_cancer Sustained Angiogenesis
+hsa-let-7e_hsa-let-7f_hsa-let-7g_hsa-let-7a_hsa-let-7b_hsa-let-7d_hsa-let-7i_hsa-mir-98_hsa-let-7c cluster_mirna GL Brain Rickman.31
+hsa-let-7e_hsa-let-7f_hsa-let-7g_hsa-let-7a_hsa-let-7b_hsa-let-7d_hsa-let-7i_hsa-mir-98_hsa-let-7c mirna_hallmark_of_cancer Self Sufficiency in Growth Signals
+hsa-let-7e_hsa-let-7f_hsa-let-7g_hsa-let-7a_hsa-let-7b_hsa-let-7d_hsa-let-7i_hsa-mir-98_hsa-let-7c mirna_hallmark_of_cancer Insensitivity to Antigrowth Signals
+hsa-let-7e_hsa-let-7f_hsa-let-7g_hsa-let-7a_hsa-let-7b_hsa-let-7d_hsa-let-7i_hsa-mir-98_hsa-let-7c mirna_hallmark_of_cancer Tissue Invasion and Metastasis
+Bladder tissue_cluster CA Bladder Dyrskjot.40
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+MM Myeloma Zhan.50 tissue_cluster Myeloma
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+END Ovarian Hendrix.58 cluster_mirna hsa-mir-621
+END Ovarian Hendrix.58 tissue_cluster Ovarian
+hsa-mir-760 cluster_mirna MM Myeloma Zhan.29
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+GL Brain Bredel.30 tissue_cluster Brain
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+Evading Apoptosis mirna_hallmark_of_cancer hsa-mir-507_hsa-mir-557
+Evading Apoptosis mirna_hallmark_of_cancer hsa-mir-548l
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+Evading Apoptosis mirna_hallmark_of_cancer hsa-mir-548d-3p
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+hsa-mir-369-5p mirna_hallmark_of_cancer Insensitivity to Antigrowth Signals
+ME Melanoma Hoek.50 tissue_cluster Melanoma
+hsa-mir-342-5p mirna_hallmark_of_cancer Self Sufficiency in Growth Signals
+hsa-mir-342-5p mirna_hallmark_of_cancer Genome Instability and Mutation
+hsa-mir-342-5p cluster_mirna COID Lung Bhattacharjee.24
+hsa-mir-342-5p mirna_hallmark_of_cancer Insensitivity to Antigrowth Signals
+hsa-mir-342-5p mirna_hallmark_of_cancer Sustained Angiogenesis
+hsa-mir-342-5p mirna_hallmark_of_cancer Tumor Promoting Inflammation
+hsa-mir-342-5p mirna_hallmark_of_cancer Limitless Replicative Potential
+hsa-mir-342-5p mirna_hallmark_of_cancer Evading Immune Detection
+hsa-mir-342-5p mirna_hallmark_of_cancer Tissue Invasion and Metastasis
+HSCC Head-Neck Cromer.25 cluster_mirna hsa-mir-1264
+HSCC Head-Neck Cromer.25 tissue_cluster Head-neck
+hsa-mir-9 cluster_mirna IDC Breast Radvanyi.16
+hsa-mir-9 mirna_hallmark_of_cancer Insensitivity to Antigrowth Signals
+hsa-mir-548n_hsa-mir-607 mirna_hallmark_of_cancer Genome Instability and Mutation
+hsa-mir-548n_hsa-mir-607 cluster_mirna SQ Lung Bhattacharjee.22
+GCT Seminoma Korkola.102 tissue_cluster Seminoma
+hsa-mir-1275 cluster_mirna GLB Brain Sun.29
+hsa-mir-1275 cluster_mirna AD Lung Beer.43
+hsa-mir-1275 mirna_hallmark_of_cancer Insensitivity to Antigrowth Signals
+hsa-mir-1275 mirna_hallmark_of_cancer Self Sufficiency in Growth Signals
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+hsa-mir-423-5p cluster_mirna CA Breast Sorlie.23
+hsa-mir-423-5p mirna_hallmark_of_cancer Insensitivity to Antigrowth Signals
+hsa-mir-423-5p mirna_hallmark_of_cancer Self Sufficiency in Growth Signals
+AD Lung Bhattacharjee.49 tissue_cluster Lung
+AD Lung Bhattacharjee.49 cluster_mirna hsa-mir-567
+GLB Brain Sun.29 tissue_cluster Brain
+hsa-mir-130b_hsa-mir-301a_hsa-mir-301b_hsa-mir-130a_hsa-mir-454 mirna_hallmark_of_cancer Sustained Angiogenesis
+hsa-mir-130b_hsa-mir-301a_hsa-mir-301b_hsa-mir-130a_hsa-mir-454 cluster_mirna CA Breast Richardson.55
+hsa-mir-130b_hsa-mir-301a_hsa-mir-301b_hsa-mir-130a_hsa-mir-454 mirna_hallmark_of_cancer Tissue Invasion and Metastasis
+AD Lung Bhattacharjee.41 tissue_cluster Lung
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+hsa-mir-656 mirna_hallmark_of_cancer Self Sufficiency in Growth Signals
+hsa-mir-656 mirna_hallmark_of_cancer Tumor Promoting Inflammation
+hsa-mir-656 mirna_hallmark_of_cancer Insensitivity to Antigrowth Signals
+hsa-mir-656 mirna_hallmark_of_cancer Sustained Angiogenesis
+hsa-mir-656 cluster_mirna AD Lung Beer.32
+hsa-mir-656 mirna_hallmark_of_cancer Evading Immune Detection
+hsa-mir-656 mirna_hallmark_of_cancer Tissue Invasion and Metastasis
+hsa-mir-548l mirna_hallmark_of_cancer Self Sufficiency in Growth Signals
+hsa-mir-548l mirna_hallmark_of_cancer Genome Instability and Mutation
+hsa-mir-548l mirna_hallmark_of_cancer Insensitivity to Antigrowth Signals
+hsa-mir-548l cluster_mirna AD Ovarian Welsh.16
+hsa-mir-548l mirna_hallmark_of_cancer Reprogramming Energy Metabolism
+hsa-mir-548l mirna_hallmark_of_cancer Tissue Invasion and Metastasis
+hsa-mir-548k cluster_mirna AD Lung Beer.9
+hsa-mir-548k mirna_hallmark_of_cancer Self Sufficiency in Growth Signals
+hsa-mir-548k mirna_hallmark_of_cancer Insensitivity to Antigrowth Signals
+TU Prostate Lapointe.37 cluster_mirna hsa-mir-199b-3p_hsa-mir-199a-3p
+TU Prostate Lapointe.37 tissue_cluster Prostate
+hsa-mir-718 cluster_mirna GL Brain Rickman.2
+hsa-mir-718 mirna_hallmark_of_cancer Tumor Promoting Inflammation
+hsa-mir-718 mirna_hallmark_of_cancer Evading Immune Detection
+hsa-mir-718 mirna_hallmark_of_cancer Tissue Invasion and Metastasis
+GCT Seminoma Korkola.4 tissue_cluster Seminoma
+GCT Seminoma Korkola.4 cluster_mirna hsa-mir-376a_hsa-mir-376b_hsa-mir-376c
+SMCL Lung Bhattacharjee.25 cluster_mirna hsa-mir-101
+SMCL Lung Bhattacharjee.25 tissue_cluster Lung
+hsa-mir-125a-3p mirna_hallmark_of_cancer Sustained Angiogenesis
+hsa-mir-125a-3p cluster_mirna IDC Breast Radvanyi.39
+hsa-mir-125a-3p mirna_hallmark_of_cancer Self Sufficiency in Growth Signals
+hsa-mir-125a-3p mirna_hallmark_of_cancer Insensitivity to Antigrowth Signals
+hsa-mir-567 mirna_hallmark_of_cancer Evading Immune Detection
+hsa-mir-567 mirna_hallmark_of_cancer Tumor Promoting Inflammation
+hsa-mir-567 mirna_hallmark_of_cancer Self Sufficiency in Growth Signals
+hsa-mir-567 mirna_hallmark_of_cancer Insensitivity to Antigrowth Signals
+B-CLL Leukemia Haslinger.27 tissue_cluster Leukemia
+SRS Ovarian Hendrix.72 tissue_cluster Ovarian
+SRS Ovarian Hendrix.72 cluster_mirna hsa-mir-1276
+hsa-mir-28-5p mirna_hallmark_of_cancer Insensitivity to Antigrowth Signals
+hsa-mir-28-5p mirna_hallmark_of_cancer Self Sufficiency in Growth Signals
+Head-neck tissue_cluster HSCC Head-Neck Cromer.18
+AD Lung Bhattacharjee.30 cluster_mirna hsa-mir-607
+AD Lung Bhattacharjee.30 tissue_cluster Lung
+Mesothelioma tissue_cluster MPM Mesothelioma Gordon.7
+AD Lung Beer.31 tissue_cluster Lung
+AD Ovarian Welsh.16 tissue_cluster Ovarian
+hsa-mir-708_hsa-mir-25_hsa-mir-32_hsa-mir-92a_hsa-mir-92b_hsa-mir-363_hsa-mir-367_hsa-mir-664 mirna_hallmark_of_cancer Self Sufficiency in Growth Signals
+hsa-mir-708_hsa-mir-25_hsa-mir-32_hsa-mir-92a_hsa-mir-92b_hsa-mir-363_hsa-mir-367_hsa-mir-664 mirna_hallmark_of_cancer Insensitivity to Antigrowth Signals
+hsa-mir-637_hsa-mir-523 mirna_hallmark_of_cancer Self Sufficiency in Growth Signals
+hsa-mir-637_hsa-mir-523 mirna_hallmark_of_cancer Genome Instability and Mutation
+hsa-mir-637_hsa-mir-523 cluster_mirna AC Brain Sun.5
+hsa-mir-637_hsa-mir-523 mirna_hallmark_of_cancer Insensitivity to Antigrowth Signals
+hsa-mir-637_hsa-mir-523 mirna_hallmark_of_cancer Sustained Angiogenesis
+hsa-mir-637_hsa-mir-523 mirna_hallmark_of_cancer Tumor Promoting Inflammation
+hsa-mir-637_hsa-mir-523 mirna_hallmark_of_cancer Evading Immune Detection
+hsa-mir-637_hsa-mir-523 mirna_hallmark_of_cancer Tissue Invasion and Metastasis
+IDC Breast Radvanyi.39 tissue_cluster Breast
+END Ovarian Hendrix.6 tissue_cluster Ovarian
+Breast tissue_cluster CA Breast Sorlie.17
+Breast tissue_cluster IDC Breast Radvanyi.16
+Breast tissue_cluster CA Breast Richardson.55
+Breast tissue_cluster CA Breast Sorlie.23
+Breast tissue_cluster IDC Breast Radvanyi.65
+Breast tissue_cluster IDC Breast Radvanyi.24
+hsa-mir-185 mirna_hallmark_of_cancer Self Sufficiency in Growth Signals
+hsa-mir-185 mirna_hallmark_of_cancer Insensitivity to Antigrowth Signals
+hsa-mir-185 cluster_mirna AC Brain Sun.22
+SQ Lung Bhattacharjee.22 tissue_cluster Lung
+SQ Lung Bhattacharjee.23 cluster_mirna hsa-mir-586
+SQ Lung Bhattacharjee.23 tissue_cluster Lung
+hsa-mir-153 mirna_hallmark_of_cancer Insensitivity to Antigrowth Signals
+hsa-mir-153 mirna_hallmark_of_cancer Self Sufficiency in Growth Signals
+IDC Breast Radvanyi.24 cluster_mirna hsa-mir-1291
+AD Lung Beer.9 tissue_cluster Lung
+hsa-mir-507_hsa-mir-557 mirna_hallmark_of_cancer Self Sufficiency in Growth Signals
+hsa-mir-507_hsa-mir-557 mirna_hallmark_of_cancer Genome Instability and Mutation
+hsa-mir-507_hsa-mir-557 mirna_hallmark_of_cancer Insensitivity to Antigrowth Signals
+hsa-mir-507_hsa-mir-557 cluster_mirna CA Colon Graudens.40
+hsa-mir-507_hsa-mir-557 mirna_hallmark_of_cancer Tumor Promoting Inflammation
+hsa-mir-507_hsa-mir-557 mirna_hallmark_of_cancer Evading Immune Detection
+hsa-mir-507_hsa-mir-557 mirna_hallmark_of_cancer Tissue Invasion and Metastasis
+GL Brain Rickman.16 cluster_mirna hsa-mir-586
+GL Brain Rickman.16 tissue_cluster Brain
+END Ovarian Hendrix.32 cluster_mirna hsa-mir-802
+END Ovarian Hendrix.32 tissue_cluster Ovarian
+AD Lung Beer.5 cluster_mirna hsa-mir-1292
+AD Lung Beer.5 tissue_cluster Lung
+AC Brain Sun.16 tissue_cluster Brain
+AC Brain Sun.16 cluster_mirna hsa-mir-655
+END Ovarian Hendrix.35 tissue_cluster Ovarian
+END Ovarian Hendrix.35 cluster_mirna hsa-mir-1276
+hsa-mir-621 mirna_hallmark_of_cancer Self Sufficiency in Growth Signals
+hsa-mir-621 mirna_hallmark_of_cancer Tumor Promoting Inflammation
+hsa-mir-621 mirna_hallmark_of_cancer Insensitivity to Antigrowth Signals
+hsa-mir-621 mirna_hallmark_of_cancer Genome Instability and Mutation
+hsa-mir-621 mirna_hallmark_of_cancer Evading Immune Detection
+hsa-mir-621 mirna_hallmark_of_cancer Tissue Invasion and Metastasis
+SRS Ovarian Hendrix.14 cluster_mirna hsa-mir-1290
+SRS Ovarian Hendrix.14 tissue_cluster Ovarian
+hsa-mir-127-5p mirna_hallmark_of_cancer Genome Instability and Mutation
+hsa-mir-127-5p cluster_mirna CCC Ovarian Hendrix.33
+hsa-mir-127-5p mirna_hallmark_of_cancer Insensitivity to Antigrowth Signals
+hsa-mir-1292 mirna_hallmark_of_cancer Self Sufficiency in Growth Signals
+hsa-mir-1292 mirna_hallmark_of_cancer Insensitivity to Antigrowth Signals
+hsa-mir-1290 mirna_hallmark_of_cancer Sustained Angiogenesis
+hsa-mir-1290 mirna_hallmark_of_cancer Self Sufficiency in Growth Signals
+hsa-mir-1290 mirna_hallmark_of_cancer Insensitivity to Antigrowth Signals
+hsa-mir-1290 mirna_hallmark_of_cancer Tissue Invasion and Metastasis
+hsa-mir-1291 mirna_hallmark_of_cancer Self Sufficiency in Growth Signals
+hsa-mir-1291 mirna_hallmark_of_cancer Genome Instability and Mutation
+hsa-mir-1291 mirna_hallmark_of_cancer Insensitivity to Antigrowth Signals
+hsa-mir-1291 mirna_hallmark_of_cancer Tumor Promoting Inflammation
+hsa-mir-1291 mirna_hallmark_of_cancer Evading Immune Detection
+hsa-mir-1291 mirna_hallmark_of_cancer Tissue Invasion and Metastasis
+hsa-mir-579 cluster_mirna TU Prostate Lapointe.7
+hsa-mir-579 mirna_hallmark_of_cancer Sustained Angiogenesis
+CA Bladder Dyrskjot.82 cluster_mirna hsa-mir-519d
+GL Brain Rickman.2 tissue_cluster Brain
+GLB Brain Sun.41 tissue_cluster Brain
+hsa-mir-200b_hsa-mir-200c_hsa-mir-200a mirna_hallmark_of_cancer Sustained Angiogenesis
+hsa-mir-200b_hsa-mir-200c_hsa-mir-200a cluster_mirna ME Melanoma Hoek.35
+CCC Ovarian Hendrix.11 tissue_cluster Ovarian
+GL Brain Rickman.8 tissue_cluster Brain
+GL Brain Rickman.8 cluster_mirna hsa-mir-634
+OD Brain Bredel.15 tissue_cluster Brain
+Melanoma tissue_cluster ME Melanoma Hoek.35
+Self Sufficiency in Growth Signals mirna_hallmark_of_cancer hsa-mir-802
+Self Sufficiency in Growth Signals mirna_hallmark_of_cancer hsa-mir-376a_hsa-mir-376b_hsa-mir-376c
+Self Sufficiency in Growth Signals mirna_hallmark_of_cancer hsa-mir-1245_hsa-mir-1245b-5p
+Self Sufficiency in Growth Signals mirna_hallmark_of_cancer hsa-mir-634
+Self Sufficiency in Growth Signals mirna_hallmark_of_cancer hsa-mir-222
+Self Sufficiency in Growth Signals mirna_hallmark_of_cancer hsa-mir-548d-3p
+Self Sufficiency in Growth Signals mirna_hallmark_of_cancer hsa-mir-586
+Self Sufficiency in Growth Signals mirna_hallmark_of_cancer hsa-mir-939
+Self Sufficiency in Growth Signals mirna_hallmark_of_cancer hsa-mir-1207-5p
+Self Sufficiency in Growth Signals mirna_hallmark_of_cancer hsa-mir-615-3p
+Self Sufficiency in Growth Signals mirna_hallmark_of_cancer hsa-mir-331-3p
+Self Sufficiency in Growth Signals mirna_hallmark_of_cancer hsa-mir-607
+Self Sufficiency in Growth Signals mirna_hallmark_of_cancer hsa-mir-296-5p
+Self Sufficiency in Growth Signals mirna_hallmark_of_cancer hsa-mir-340
+Self Sufficiency in Growth Signals mirna_hallmark_of_cancer hsa-mir-519d
+Self Sufficiency in Growth Signals mirna_hallmark_of_cancer hsa-mir-29b_hsa-mir-29c_hsa-mir-29a_hsa-mir-767-5p_hsa-mir-450b-5p
+AC Brain Sun.22 tissue_cluster Brain
+hsa-mir-802 cluster_mirna IDC Breast Radvanyi.65
+hsa-mir-802 mirna_hallmark_of_cancer Insensitivity to Antigrowth Signals
+END Ovarian Hendrix.22 cluster_mirna hsa-mir-944
+END Ovarian Hendrix.22 tissue_cluster Ovarian
+hsa-mir-376a_hsa-mir-376b_hsa-mir-376c mirna_hallmark_of_cancer Genome Instability and Mutation
+hsa-mir-376a_hsa-mir-376b_hsa-mir-376c mirna_hallmark_of_cancer Insensitivity to Antigrowth Signals
+hsa-mir-376a_hsa-mir-376b_hsa-mir-376c mirna_hallmark_of_cancer Sustained Angiogenesis
+hsa-mir-376a_hsa-mir-376b_hsa-mir-376c mirna_hallmark_of_cancer Tumor Promoting Inflammation
+hsa-mir-376a_hsa-mir-376b_hsa-mir-376c mirna_hallmark_of_cancer Evading Immune Detection
+hsa-mir-376a_hsa-mir-376b_hsa-mir-376c mirna_hallmark_of_cancer Tissue Invasion and Metastasis
+hsa-mir-655 mirna_hallmark_of_cancer Genome Instability and Mutation
+hsa-mir-634 mirna_hallmark_of_cancer Insensitivity to Antigrowth Signals
+hsa-mir-634 mirna_hallmark_of_cancer Tumor Promoting Inflammation
+hsa-mir-634 mirna_hallmark_of_cancer Evading Immune Detection
+hsa-mir-634 mirna_hallmark_of_cancer Tissue Invasion and Metastasis
+Genome Instability and Mutation mirna_hallmark_of_cancer hsa-mir-25
+Genome Instability and Mutation mirna_hallmark_of_cancer hsa-mir-1245_hsa-mir-1245b-5p
+Genome Instability and Mutation mirna_hallmark_of_cancer hsa-mir-101
+Genome Instability and Mutation mirna_hallmark_of_cancer hsa-mir-548d-3p
+Genome Instability and Mutation mirna_hallmark_of_cancer hsa-mir-96
+Genome Instability and Mutation mirna_hallmark_of_cancer hsa-mir-1276
+Genome Instability and Mutation mirna_hallmark_of_cancer hsa-mir-331-3p
+Genome Instability and Mutation mirna_hallmark_of_cancer hsa-mir-296-5p
+Genome Instability and Mutation mirna_hallmark_of_cancer hsa-mir-654-5p
+Genome Instability and Mutation mirna_hallmark_of_cancer hsa-mir-519d
+Genome Instability and Mutation mirna_hallmark_of_cancer hsa-mir-338-5p
+Genome Instability and Mutation mirna_hallmark_of_cancer hsa-mir-1264
+Leukemia tissue_cluster B-CLL Leukemia Haslinger.9
+Leukemia tissue_cluster B-CLL Leukemia Haslinger.62
+AD Lung Beer.43 tissue_cluster Lung
+AC Brain Sun.5 tissue_cluster Brain
+Prostate tissue_cluster TU Prostate Lapointe.7
+hsa-mir-1207-5p cluster_mirna AD Ovarian Welsh.22
+hsa-mir-1207-5p mirna_hallmark_of_cancer Insensitivity to Antigrowth Signals
+hsa-mir-615-3p cluster_mirna HSCC Head-Neck Cromer.18
+hsa-mir-615-3p mirna_hallmark_of_cancer Insensitivity to Antigrowth Signals
+hsa-mir-331-3p mirna_hallmark_of_cancer Insensitivity to Antigrowth Signals
+hsa-mir-331-3p mirna_hallmark_of_cancer Sustained Angiogenesis
+hsa-mir-331-3p mirna_hallmark_of_cancer Tumor Promoting Inflammation
+hsa-mir-331-3p mirna_hallmark_of_cancer Limitless Replicative Potential
+hsa-mir-331-3p cluster_mirna SMCL Lung Bhattacharjee.61
+hsa-mir-331-3p mirna_hallmark_of_cancer Evading Immune Detection
+hsa-mir-331-3p mirna_hallmark_of_cancer Tissue Invasion and Metastasis
+Sustained Angiogenesis mirna_hallmark_of_cancer hsa-mir-767-5p
+Sustained Angiogenesis mirna_hallmark_of_cancer hsa-mir-296-5p
+Sustained Angiogenesis mirna_hallmark_of_cancer hsa-mir-519d
+Sustained Angiogenesis mirna_hallmark_of_cancer hsa-mir-29b_hsa-mir-29c_hsa-mir-29a_hsa-mir-767-5p_hsa-mir-450b-5p
+Sustained Angiogenesis mirna_hallmark_of_cancer hsa-mir-222
+GL Brain Bredel.79 tissue_cluster Brain
+GL Brain Bredel.79 cluster_mirna hsa-mir-340
+hsa-mir-607 mirna_hallmark_of_cancer Insensitivity to Antigrowth Signals
+Evading Immune Detection mirna_hallmark_of_cancer hsa-mir-325
+Evading Immune Detection mirna_hallmark_of_cancer hsa-mir-1245_hsa-mir-1245b-5p
+Evading Immune Detection mirna_hallmark_of_cancer hsa-mir-519d
+Evading Immune Detection mirna_hallmark_of_cancer hsa-mir-586
+SMCL Lung Bhattacharjee.35 tissue_cluster Lung
+hsa-mir-96 cluster_mirna CA Colon Graudens.38
+COID Lung Bhattacharjee.92 tissue_cluster Lung
+AD Lung Stearman.19 tissue_cluster Lung
+hsa-mir-767-5p mirna_hallmark_of_cancer Tissue Invasion and Metastasis
+hsa-mir-767-5p mirna_hallmark_of_cancer Insensitivity to Antigrowth Signals
+hsa-mir-767-5p cluster_mirna AD Ovarian Welsh.20
+hsa-mir-325 mirna_hallmark_of_cancer Tumor Promoting Inflammation
+hsa-mir-325 mirna_hallmark_of_cancer Tissue Invasion and Metastasis
+AD Lung Beer.32 tissue_cluster Lung
+SQ Lung Bhattacharjee.13 tissue_cluster Lung
+SQ Lung Bhattacharjee.13 cluster_mirna hsa-mir-296-5p
+CCC Ovarian Hendrix.33 tissue_cluster Ovarian
+Lung tissue_cluster AD Lung Bhattacharjee.0
+Lung tissue_cluster SMCL Lung Bhattacharjee.61
+Lung tissue_cluster COID Lung Bhattacharjee.24
+Lung tissue_cluster AD Lung Beer.35
+AD Lung Beer.35 cluster_mirna hsa-mir-222
+hsa-mir-29b_hsa-mir-29c_hsa-mir-29a_hsa-mir-767-5p_hsa-mir-450b-5p mirna_hallmark_of_cancer Insensitivity to Antigrowth Signals
+hsa-mir-29b_hsa-mir-29c_hsa-mir-29a_hsa-mir-767-5p_hsa-mir-450b-5p mirna_hallmark_of_cancer Tissue Invasion and Metastasis
+hsa-mir-338-5p cluster_mirna AD Lung Bhattacharjee.0
+hsa-mir-338-5p mirna_hallmark_of_cancer Insensitivity to Antigrowth Signals
+CA Bladder Dyrskjot.40 cluster_mirna hsa-mir-548d-3p
+hsa-mir-25 mirna_hallmark_of_cancer Insensitivity to Antigrowth Signals
+B-CLL Leukemia Haslinger.9 cluster_mirna hsa-mir-1245_hsa-mir-1245b-5p
+Ovarian tissue_cluster AD Ovarian Welsh.26
+Ovarian tissue_cluster AD Ovarian Welsh.22
+Ovarian tissue_cluster AD Ovarian Welsh.20
+hsa-mir-1245_hsa-mir-1245b-5p mirna_hallmark_of_cancer Insensitivity to Antigrowth Signals
+hsa-mir-1245_hsa-mir-1245b-5p mirna_hallmark_of_cancer Tumor Promoting Inflammation
+hsa-mir-1245_hsa-mir-1245b-5p mirna_hallmark_of_cancer Tissue Invasion and Metastasis
+hsa-mir-222 mirna_hallmark_of_cancer Insensitivity to Antigrowth Signals
+hsa-mir-222 mirna_hallmark_of_cancer Tissue Invasion and Metastasis
+Tissue Invasion and Metastasis mirna_hallmark_of_cancer hsa-mir-199b-3p_hsa-mir-199a-3p
+Tissue Invasion and Metastasis mirna_hallmark_of_cancer hsa-mir-548d-3p
+Tissue Invasion and Metastasis mirna_hallmark_of_cancer hsa-mir-586
+Tissue Invasion and Metastasis mirna_hallmark_of_cancer hsa-mir-296-5p
+Tissue Invasion and Metastasis mirna_hallmark_of_cancer hsa-mir-507
+Tissue Invasion and Metastasis mirna_hallmark_of_cancer hsa-mir-519d
+Tissue Invasion and Metastasis mirna_hallmark_of_cancer hsa-mir-944
+hsa-mir-101 mirna_hallmark_of_cancer Insensitivity to Antigrowth Signals
+MM Myeloma Zhan.33 cluster_mirna hsa-mir-507
+MM Myeloma Zhan.33 tissue_cluster Myeloma
+hsa-mir-548d-3p mirna_hallmark_of_cancer Insensitivity to Antigrowth Signals
+Tumor Promoting Inflammation mirna_hallmark_of_cancer hsa-mir-519d
+Tumor Promoting Inflammation mirna_hallmark_of_cancer hsa-mir-586
+CA Colon Graudens.38 tissue_cluster Colon
+hsa-mir-1276 cluster_mirna CA Bladder Dyrskjot.51
+hsa-mir-586 mirna_hallmark_of_cancer Insensitivity to Antigrowth Signals
+hsa-mir-586 mirna_hallmark_of_cancer Reprogramming Energy Metabolism
+hsa-mir-939 mirna_hallmark_of_cancer Insensitivity to Antigrowth Signals
+GL Brain Rickman.31 tissue_cluster Brain
+Myeloma tissue_cluster MM Myeloma Zhan.29
+hsa-mir-296-5p mirna_hallmark_of_cancer Insensitivity to Antigrowth Signals
+hsa-mir-340 mirna_hallmark_of_cancer Insensitivity to Antigrowth Signals
+Insensitivity to Antigrowth Signals mirna_hallmark_of_cancer hsa-mir-519d
+Insensitivity to Antigrowth Signals mirna_hallmark_of_cancer hsa-mir-1264
+CA Colon Graudens.40 tissue_cluster Colon
View
408 network/static/sig_overlap_network_0.05_type_edge.attr
@@ -0,0 +1,408 @@
+type (class=String)
+GLB Brain Sun.36 (tissue_cluster) Brain = tissue_cluster
+GLB Brain Sun.36 (cluster_mirna) hsa-mir-423-5p = cluster_mirna
+SMCL Lung Bhattacharjee.36 (tissue_cluster) Lung = tissue_cluster
+SMCL Lung Bhattacharjee.36 (cluster_mirna) hsa-mir-296-5p = cluster_mirna
+hsa-mir-29b_hsa-mir-29c_hsa-mir-29a (mirna_hallmark_of_cancer) Self Sufficiency in Growth Signals = mirna_hallmark_of_cancer
+hsa-mir-29b_hsa-mir-29c_hsa-mir-29a (mirna_hallmark_of_cancer) Insensitivity to Antigrowth Signals = mirna_hallmark_of_cancer
+hsa-mir-29b_hsa-mir-29c_hsa-mir-29a (mirna_hallmark_of_cancer) Sustained Angiogenesis = mirna_hallmark_of_cancer
+hsa-mir-29b_hsa-mir-29c_hsa-mir-29a (cluster_mirna) AD Lung Beer.31 = cluster_mirna
+hsa-mir-29b_hsa-mir-29c_hsa-mir-29a (cluster_mirna) AD Lung Bhattacharjee.59 = cluster_mirna
+hsa-mir-29b_hsa-mir-29c_hsa-mir-29a (cluster_mirna) END Ovarian Hendrix.6 = cluster_mirna
+hsa-mir-29b_hsa-mir-29c_hsa-mir-29a (cluster_mirna) CCC Ovarian Hendrix.11 = cluster_mirna
+hsa-mir-29b_hsa-mir-29c_hsa-mir-29a (mirna_hallmark_of_cancer) Tissue Invasion and Metastasis = mirna_hallmark_of_cancer
+hsa-mir-920 (cluster_mirna) COID Lung Bhattacharjee.92 = cluster_mirna
+hsa-mir-920 (mirna_hallmark_of_cancer) Self Sufficiency in Growth Signals = mirna_hallmark_of_cancer
+hsa-mir-920 (mirna_hallmark_of_cancer) Genome Instability and Mutation = mirna_hallmark_of_cancer
+hsa-mir-920 (mirna_hallmark_of_cancer) Insensitivity to Antigrowth Signals = mirna_hallmark_of_cancer
+hsa-mir-920 (mirna_hallmark_of_cancer) Sustained Angiogenesis = mirna_hallmark_of_cancer
+hsa-mir-920 (mirna_hallmark_of_cancer) Tumor Promoting Inflammation = mirna_hallmark_of_cancer
+hsa-mir-920 (mirna_hallmark_of_cancer) Evading Immune Detection = mirna_hallmark_of_cancer
+hsa-mir-920 (mirna_hallmark_of_cancer) Tissue Invasion and Metastasis = mirna_hallmark_of_cancer
+SQ Lung Bhattacharjee.44 (tissue_cluster) Lung = tissue_cluster
+SQ Lung Bhattacharjee.44 (cluster_mirna) hsa-mir-767-5p = cluster_mirna
+SQ Lung Bhattacharjee.45 (cluster_mirna) hsa-mir-654-5p = cluster_mirna
+SQ Lung Bhattacharjee.45 (tissue_cluster) Lung = tissue_cluster
+hsa-mir-526b (mirna_hallmark_of_cancer) Evading Immune Detection = mirna_hallmark_of_cancer
+hsa-mir-526b (mirna_hallmark_of_cancer) Tumor Promoting Inflammation = mirna_hallmark_of_cancer
+hsa-mir-526b (cluster_mirna) MPM Mesothelioma Gordon.7 = cluster_mirna
+hsa-mir-526b (mirna_hallmark_of_cancer) Self Sufficiency in Growth Signals = mirna_hallmark_of_cancer
+hsa-mir-526b (mirna_hallmark_of_cancer) Insensitivity to Antigrowth Signals = mirna_hallmark_of_cancer
+HSCC Head-Neck Chung.1 (cluster_mirna) hsa-mir-29b_hsa-mir-29c_hsa-mir-29a_hsa-mir-767-5p_hsa-mir-450b-5p = cluster_mirna
+HSCC Head-Neck Chung.1 (tissue_cluster) Head-neck = tissue_cluster
+hsa-mir-370 (cluster_mirna) AD Lung Stearman.19 = cluster_mirna
+hsa-mir-370 (mirna_hallmark_of_cancer) Genome Instability and Mutation = mirna_hallmark_of_cancer
+hsa-mir-370 (mirna_hallmark_of_cancer) Insensitivity to Antigrowth Signals = mirna_hallmark_of_cancer
+hsa-mir-370 (mirna_hallmark_of_cancer) Sustained Angiogenesis = mirna_hallmark_of_cancer
+hsa-mir-370 (mirna_hallmark_of_cancer) Self Sufficiency in Growth Signals = mirna_hallmark_of_cancer
+hsa-mir-370 (mirna_hallmark_of_cancer) Tissue Invasion and Metastasis = mirna_hallmark_of_cancer
+CA Colon Graudens.35 (tissue_cluster) Colon = tissue_cluster
+CA Colon Graudens.35 (cluster_mirna) hsa-mir-325 = cluster_mirna
+TU Prostate Lapointe.23 (cluster_mirna) hsa-mir-25 = cluster_mirna
+TU Prostate Lapointe.23 (tissue_cluster) Prostate = tissue_cluster
+hsa-mir-548c-3p (mirna_hallmark_of_cancer) Self Sufficiency in Growth Signals = mirna_hallmark_of_cancer
+hsa-mir-548c-3p (mirna_hallmark_of_cancer) Genome Instability and Mutation = mirna_hallmark_of_cancer
+hsa-mir-548c-3p (mirna_hallmark_of_cancer) Insensitivity to Antigrowth Signals = mirna_hallmark_of_cancer
+hsa-mir-548c-3p (mirna_hallmark_of_cancer) Sustained Angiogenesis = mirna_hallmark_of_cancer
+hsa-mir-548c-3p (mirna_hallmark_of_cancer) Tumor Promoting Inflammation = mirna_hallmark_of_cancer
+hsa-mir-548c-3p (cluster_mirna) B-CLL Leukemia Haslinger.62 = cluster_mirna
+hsa-mir-548c-3p (mirna_hallmark_of_cancer) Evading Apoptosis = mirna_hallmark_of_cancer
+hsa-mir-548c-3p (mirna_hallmark_of_cancer) Evading Immune Detection = mirna_hallmark_of_cancer
+hsa-mir-548c-3p (cluster_mirna) ME Melanoma Hoek.50 = cluster_mirna
+hsa-mir-548c-3p (mirna_hallmark_of_cancer) Tissue Invasion and Metastasis = mirna_hallmark_of_cancer
+ODGL Brain Sun.2 (tissue_cluster) Brain = tissue_cluster
+ODGL Brain Sun.2 (cluster_mirna) hsa-mir-939 = cluster_mirna
+ODGL Brain Sun.32 (tissue_cluster) Brain = tissue_cluster
+ODGL Brain Sun.32 (cluster_mirna) hsa-mir-153 = cluster_mirna
+GCT Seminoma Korkola.75 (cluster_mirna) hsa-mir-708_hsa-mir-25_hsa-mir-32_hsa-mir-92a_hsa-mir-92b_hsa-mir-363_hsa-mir-367_hsa-mir-664 = cluster_mirna
+GCT Seminoma Korkola.75 (tissue_cluster) Seminoma = tissue_cluster
+hsa-let-7e_hsa-let-7f_hsa-let-7g_hsa-let-7a_hsa-let-7b_hsa-let-7d_hsa-let-7i_hsa-mir-98_hsa-let-7c (mirna_hallmark_of_cancer) Sustained Angiogenesis = mirna_hallmark_of_cancer
+hsa-let-7e_hsa-let-7f_hsa-let-7g_hsa-let-7a_hsa-let-7b_hsa-let-7d_hsa-let-7i_hsa-mir-98_hsa-let-7c (cluster_mirna) GL Brain Rickman.31 = cluster_mirna
+hsa-let-7e_hsa-let-7f_hsa-let-7g_hsa-let-7a_hsa-let-7b_hsa-let-7d_hsa-let-7i_hsa-mir-98_hsa-let-7c (mirna_hallmark_of_cancer) Self Sufficiency in Growth Signals = mirna_hallmark_of_cancer
+hsa-let-7e_hsa-let-7f_hsa-let-7g_hsa-let-7a_hsa-let-7b_hsa-let-7d_hsa-let-7i_hsa-mir-98_hsa-let-7c (mirna_hallmark_of_cancer) Insensitivity to Antigrowth Signals = mirna_hallmark_of_cancer
+hsa-let-7e_hsa-let-7f_hsa-let-7g_hsa-let-7a_hsa-let-7b_hsa-let-7d_hsa-let-7i_hsa-mir-98_hsa-let-7c (mirna_hallmark_of_cancer) Tissue Invasion and Metastasis = mirna_hallmark_of_cancer
+Bladder (tissue_cluster) CA Bladder Dyrskjot.40 = tissue_cluster
+Bladder (tissue_cluster) CA Bladder Dyrskjot.82 = tissue_cluster
+Bladder (tissue_cluster) CA Bladder Dyrskjot.51 = tissue_cluster
+MM Myeloma Zhan.50 (tissue_cluster) Myeloma = tissue_cluster
+MM Myeloma Zhan.50 (cluster_mirna) hsa-mir-28-5p = cluster_mirna
+AD Lung Bhattacharjee.59 (tissue_cluster) Lung = tissue_cluster
+GBM Brain Liang.18 (tissue_cluster) Brain = tissue_cluster
+GBM Brain Liang.18 (cluster_mirna) hsa-mir-369-5p = cluster_mirna
+hsa-mir-34a (mirna_hallmark_of_cancer) Tumor Promoting Inflammation = mirna_hallmark_of_cancer
+hsa-mir-34a (mirna_hallmark_of_cancer) Evading Immune Detection = mirna_hallmark_of_cancer
+hsa-mir-34a (cluster_mirna) GCT Seminoma Korkola.102 = cluster_mirna
+hsa-mir-34a (mirna_hallmark_of_cancer) Insensitivity to Antigrowth Signals = mirna_hallmark_of_cancer
+hsa-mir-34a (mirna_hallmark_of_cancer) Self Sufficiency in Growth Signals = mirna_hallmark_of_cancer
+hsa-mir-640 (cluster_mirna) CA Breast Sorlie.17 = cluster_mirna
+hsa-mir-640 (mirna_hallmark_of_cancer) Tumor Promoting Inflammation = mirna_hallmark_of_cancer
+hsa-mir-640 (mirna_hallmark_of_cancer) Evading Immune Detection = mirna_hallmark_of_cancer
+hsa-mir-640 (mirna_hallmark_of_cancer) Self Sufficiency in Growth Signals = mirna_hallmark_of_cancer
+hsa-mir-640 (mirna_hallmark_of_cancer) Insensitivity to Antigrowth Signals = mirna_hallmark_of_cancer
+END Ovarian Hendrix.58 (cluster_mirna) hsa-mir-621 = cluster_mirna
+END Ovarian Hendrix.58 (tissue_cluster) Ovarian = tissue_cluster
+hsa-mir-760 (cluster_mirna) MM Myeloma Zhan.29 = cluster_mirna
+hsa-mir-760 (mirna_hallmark_of_cancer) Self Sufficiency in Growth Signals = mirna_hallmark_of_cancer
+hsa-mir-760 (mirna_hallmark_of_cancer) Genome Instability and Mutation = mirna_hallmark_of_cancer
+hsa-mir-760 (cluster_mirna) B-CLL Leukemia Haslinger.27 = cluster_mirna
+hsa-mir-760 (mirna_hallmark_of_cancer) Insensitivity to Antigrowth Signals = mirna_hallmark_of_cancer
+hsa-mir-760 (cluster_mirna) GLB Brain Sun.41 = cluster_mirna
+hsa-mir-760 (mirna_hallmark_of_cancer) Reprogramming Energy Metabolism = mirna_hallmark_of_cancer
+hsa-mir-760 (mirna_hallmark_of_cancer) Evading Apoptosis = mirna_hallmark_of_cancer
+hsa-mir-760 (cluster_mirna) AD Lung Bhattacharjee.42 = cluster_mirna
+hsa-mir-760 (mirna_hallmark_of_cancer) Tissue Invasion and Metastasis = mirna_hallmark_of_cancer
+GL Brain Bredel.30 (tissue_cluster) Brain = tissue_cluster
+GL Brain Bredel.30 (cluster_mirna) hsa-mir-342-5p = cluster_mirna
+hsa-mir-765 (mirna_hallmark_of_cancer) Reprogramming Energy Metabolism = mirna_hallmark_of_cancer
+hsa-mir-765 (cluster_mirna) OD Brain Bredel.15 = cluster_mirna
+hsa-mir-212 (mirna_hallmark_of_cancer) Genome Instability and Mutation = mirna_hallmark_of_cancer
+hsa-mir-212 (cluster_mirna) SMCL Lung Bhattacharjee.35 = cluster_mirna
+hsa-mir-212 (mirna_hallmark_of_cancer) Insensitivity to Antigrowth Signals = mirna_hallmark_of_cancer
+AD Ovarian Welsh.1 (tissue_cluster) Ovarian = tissue_cluster
+AD Ovarian Welsh.1 (cluster_mirna) hsa-mir-548d-3p = cluster_mirna
+hsa-mir-210 (mirna_hallmark_of_cancer) Self Sufficiency in Growth Signals = mirna_hallmark_of_cancer
+hsa-mir-210 (cluster_mirna) AD Ovarian Welsh.26 = cluster_mirna
+hsa-mir-210 (mirna_hallmark_of_cancer) Insensitivity to Antigrowth Signals = mirna_hallmark_of_cancer
+hsa-mir-210 (mirna_hallmark_of_cancer) Tumor Promoting Inflammation = mirna_hallmark_of_cancer
+hsa-mir-210 (mirna_hallmark_of_cancer) Evading Apoptosis = mirna_hallmark_of_cancer
+hsa-mir-210 (mirna_hallmark_of_cancer) Evading Immune Detection = mirna_hallmark_of_cancer
+hsa-mir-210 (mirna_hallmark_of_cancer) Tissue Invasion and Metastasis = mirna_hallmark_of_cancer
+Evading Apoptosis (mirna_hallmark_of_cancer) hsa-mir-507_hsa-mir-557 = mirna_hallmark_of_cancer
+Evading Apoptosis (mirna_hallmark_of_cancer) hsa-mir-548l = mirna_hallmark_of_cancer
+Evading Apoptosis (mirna_hallmark_of_cancer) hsa-mir-548n_hsa-mir-607 = mirna_hallmark_of_cancer
+Evading Apoptosis (mirna_hallmark_of_cancer) hsa-mir-376a_hsa-mir-376b_hsa-mir-376c = mirna_hallmark_of_cancer
+Evading Apoptosis (mirna_hallmark_of_cancer) hsa-mir-548d-3p = mirna_hallmark_of_cancer
+Evading Apoptosis (mirna_hallmark_of_cancer) hsa-mir-331-3p = mirna_hallmark_of_cancer
+Evading Apoptosis (mirna_hallmark_of_cancer) hsa-mir-637_hsa-mir-523 = mirna_hallmark_of_cancer
+Evading Apoptosis (mirna_hallmark_of_cancer) hsa-mir-342-5p = mirna_hallmark_of_cancer
+hsa-mir-369-5p (mirna_hallmark_of_cancer) Self Sufficiency in Growth Signals = mirna_hallmark_of_cancer
+hsa-mir-369-5p (mirna_hallmark_of_cancer) Insensitivity to Antigrowth Signals = mirna_hallmark_of_cancer
+ME Melanoma Hoek.50 (tissue_cluster) Melanoma = tissue_cluster
+hsa-mir-342-5p (mirna_hallmark_of_cancer) Self Sufficiency in Growth Signals = mirna_hallmark_of_cancer
+hsa-mir-342-5p (mirna_hallmark_of_cancer) Genome Instability and Mutation = mirna_hallmark_of_cancer
+hsa-mir-342-5p (cluster_mirna) COID Lung Bhattacharjee.24 = cluster_mirna
+hsa-mir-342-5p (mirna_hallmark_of_cancer) Insensitivity to Antigrowth Signals = mirna_hallmark_of_cancer
+hsa-mir-342-5p (mirna_hallmark_of_cancer) Sustained Angiogenesis = mirna_hallmark_of_cancer
+hsa-mir-342-5p (mirna_hallmark_of_cancer) Tumor Promoting Inflammation = mirna_hallmark_of_cancer
+hsa-mir-342-5p (mirna_hallmark_of_cancer) Limitless Replicative Potential = mirna_hallmark_of_cancer
+hsa-mir-342-5p (mirna_hallmark_of_cancer) Evading Immune Detection = mirna_hallmark_of_cancer
+hsa-mir-342-5p (mirna_hallmark_of_cancer) Tissue Invasion and Metastasis = mirna_hallmark_of_cancer
+HSCC Head-Neck Cromer.25 (cluster_mirna) hsa-mir-1264 = cluster_mirna
+HSCC Head-Neck Cromer.25 (tissue_cluster) Head-neck = tissue_cluster
+hsa-mir-9 (cluster_mirna) IDC Breast Radvanyi.16 = cluster_mirna
+hsa-mir-9 (mirna_hallmark_of_cancer) Insensitivity to Antigrowth Signals = mirna_hallmark_of_cancer
+hsa-mir-548n_hsa-mir-607 (mirna_hallmark_of_cancer) Genome Instability and Mutation = mirna_hallmark_of_cancer
+hsa-mir-548n_hsa-mir-607 (cluster_mirna) SQ Lung Bhattacharjee.22 = cluster_mirna
+GCT Seminoma Korkola.102 (tissue_cluster) Seminoma = tissue_cluster
+hsa-mir-1275 (cluster_mirna) GLB Brain Sun.29 = cluster_mirna
+hsa-mir-1275 (cluster_mirna) AD Lung Beer.43 = cluster_mirna
+hsa-mir-1275 (mirna_hallmark_of_cancer) Insensitivity to Antigrowth Signals = mirna_hallmark_of_cancer
+hsa-mir-1275 (mirna_hallmark_of_cancer) Self Sufficiency in Growth Signals = mirna_hallmark_of_cancer
+hsa-mir-423-5p (mirna_hallmark_of_cancer) Tissue Invasion and Metastasis = mirna_hallmark_of_cancer
+hsa-mir-423-5p (cluster_mirna) CA Breast Sorlie.23 = cluster_mirna
+hsa-mir-423-5p (mirna_hallmark_of_cancer) Insensitivity to Antigrowth Signals = mirna_hallmark_of_cancer
+hsa-mir-423-5p (mirna_hallmark_of_cancer) Self Sufficiency in Growth Signals = mirna_hallmark_of_cancer
+AD Lung Bhattacharjee.49 (tissue_cluster) Lung = tissue_cluster
+AD Lung Bhattacharjee.49 (cluster_mirna) hsa-mir-567 = cluster_mirna
+GLB Brain Sun.29 (tissue_cluster) Brain = tissue_cluster
+hsa-mir-130b_hsa-mir-301a_hsa-mir-301b_hsa-mir-130a_hsa-mir-454 (mirna_hallmark_of_cancer) Sustained Angiogenesis = mirna_hallmark_of_cancer
+hsa-mir-130b_hsa-mir-301a_hsa-mir-301b_hsa-mir-130a_hsa-mir-454 (cluster_mirna) CA Breast Richardson.55 = cluster_mirna
+hsa-mir-130b_hsa-mir-301a_hsa-mir-301b_hsa-mir-130a_hsa-mir-454 (mirna_hallmark_of_cancer) Tissue Invasion and Metastasis = mirna_hallmark_of_cancer
+AD Lung Bhattacharjee.41 (tissue_cluster) Lung = tissue_cluster
+AD Lung Bhattacharjee.41 (cluster_mirna) hsa-mir-296-5p = cluster_mirna
+AD Lung Bhattacharjee.42 (tissue_cluster) Lung = tissue_cluster
+hsa-mir-656 (mirna_hallmark_of_cancer) Self Sufficiency in Growth Signals = mirna_hallmark_of_cancer
+hsa-mir-656 (mirna_hallmark_of_cancer) Tumor Promoting Inflammation = mirna_hallmark_of_cancer
+hsa-mir-656 (mirna_hallmark_of_cancer) Insensitivity to Antigrowth Signals = mirna_hallmark_of_cancer
+hsa-mir-656 (mirna_hallmark_of_cancer) Sustained Angiogenesis = mirna_hallmark_of_cancer
+hsa-mir-656 (cluster_mirna) AD Lung Beer.32 = cluster_mirna
+hsa-mir-656 (mirna_hallmark_of_cancer) Evading Immune Detection = mirna_hallmark_of_cancer
+hsa-mir-656 (mirna_hallmark_of_cancer) Tissue Invasion and Metastasis = mirna_hallmark_of_cancer
+hsa-mir-548l (mirna_hallmark_of_cancer) Self Sufficiency in Growth Signals = mirna_hallmark_of_cancer
+hsa-mir-548l (mirna_hallmark_of_cancer) Genome Instability and Mutation = mirna_hallmark_of_cancer
+hsa-mir-548l (mirna_hallmark_of_cancer) Insensitivity to Antigrowth Signals = mirna_hallmark_of_cancer
+hsa-mir-548l (cluster_mirna) AD Ovarian Welsh.16 = cluster_mirna
+hsa-mir-548l (mirna_hallmark_of_cancer) Reprogramming Energy Metabolism = mirna_hallmark_of_cancer
+hsa-mir-548l (mirna_hallmark_of_cancer) Tissue Invasion and Metastasis = mirna_hallmark_of_cancer
+hsa-mir-548k (cluster_mirna) AD Lung Beer.9 = cluster_mirna
+hsa-mir-548k (mirna_hallmark_of_cancer) Self Sufficiency in Growth Signals = mirna_hallmark_of_cancer
+hsa-mir-548k (mirna_hallmark_of_cancer) Insensitivity to Antigrowth Signals = mirna_hallmark_of_cancer
+TU Prostate Lapointe.37 (cluster_mirna) hsa-mir-199b-3p_hsa-mir-199a-3p = cluster_mirna
+TU Prostate Lapointe.37 (tissue_cluster) Prostate = tissue_cluster
+hsa-mir-718 (cluster_mirna) GL Brain Rickman.2 = cluster_mirna
+hsa-mir-718 (mirna_hallmark_of_cancer) Tumor Promoting Inflammation = mirna_hallmark_of_cancer
+hsa-mir-718 (mirna_hallmark_of_cancer) Evading Immune Detection = mirna_hallmark_of_cancer
+hsa-mir-718 (mirna_hallmark_of_cancer) Tissue Invasion and Metastasis = mirna_hallmark_of_cancer
+GCT Seminoma Korkola.4 (tissue_cluster) Seminoma = tissue_cluster
+GCT Seminoma Korkola.4 (cluster_mirna) hsa-mir-376a_hsa-mir-376b_hsa-mir-376c = cluster_mirna
+SMCL Lung Bhattacharjee.25 (cluster_mirna) hsa-mir-101 = cluster_mirna
+SMCL Lung Bhattacharjee.25 (tissue_cluster) Lung = tissue_cluster
+hsa-mir-125a-3p (mirna_hallmark_of_cancer) Sustained Angiogenesis = mirna_hallmark_of_cancer
+hsa-mir-125a-3p (cluster_mirna) IDC Breast Radvanyi.39 = cluster_mirna
+hsa-mir-125a-3p (mirna_hallmark_of_cancer) Self Sufficiency in Growth Signals = mirna_hallmark_of_cancer
+hsa-mir-125a-3p (mirna_hallmark_of_cancer) Insensitivity to Antigrowth Signals = mirna_hallmark_of_cancer
+hsa-mir-567 (mirna_hallmark_of_cancer) Evading Immune Detection = mirna_hallmark_of_cancer
+hsa-mir-567 (mirna_hallmark_of_cancer) Tumor Promoting Inflammation = mirna_hallmark_of_cancer
+hsa-mir-567 (mirna_hallmark_of_cancer) Self Sufficiency in Growth Signals = mirna_hallmark_of_cancer
+hsa-mir-567 (mirna_hallmark_of_cancer) Insensitivity to Antigrowth Signals = mirna_hallmark_of_cancer
+B-CLL Leukemia Haslinger.27 (tissue_cluster) Leukemia = tissue_cluster
+SRS Ovarian Hendrix.72 (tissue_cluster) Ovarian = tissue_cluster
+SRS Ovarian Hendrix.72 (cluster_mirna) hsa-mir-1276 = cluster_mirna
+hsa-mir-28-5p (mirna_hallmark_of_cancer) Insensitivity to Antigrowth Signals = mirna_hallmark_of_cancer
+hsa-mir-28-5p (mirna_hallmark_of_cancer) Self Sufficiency in Growth Signals = mirna_hallmark_of_cancer
+Head-neck (tissue_cluster) HSCC Head-Neck Cromer.18 = tissue_cluster
+AD Lung Bhattacharjee.30 (cluster_mirna) hsa-mir-607 = cluster_mirna
+AD Lung Bhattacharjee.30 (tissue_cluster) Lung = tissue_cluster
+Mesothelioma (tissue_cluster) MPM Mesothelioma Gordon.7 = tissue_cluster
+AD Lung Beer.31 (tissue_cluster) Lung = tissue_cluster
+AD Ovarian Welsh.16 (tissue_cluster) Ovarian = tissue_cluster
+hsa-mir-708_hsa-mir-25_hsa-mir-32_hsa-mir-92a_hsa-mir-92b_hsa-mir-363_hsa-mir-367_hsa-mir-664 (mirna_hallmark_of_cancer) Self Sufficiency in Growth Signals = mirna_hallmark_of_cancer
+hsa-mir-708_hsa-mir-25_hsa-mir-32_hsa-mir-92a_hsa-mir-92b_hsa-mir-363_hsa-mir-367_hsa-mir-664 (mirna_hallmark_of_cancer) Insensitivity to Antigrowth Signals = mirna_hallmark_of_cancer
+hsa-mir-637_hsa-mir-523 (mirna_hallmark_of_cancer) Self Sufficiency in Growth Signals = mirna_hallmark_of_cancer
+hsa-mir-637_hsa-mir-523 (mirna_hallmark_of_cancer) Genome Instability and Mutation = mirna_hallmark_of_cancer
+hsa-mir-637_hsa-mir-523 (cluster_mirna) AC Brain Sun.5 = cluster_mirna
+hsa-mir-637_hsa-mir-523 (mirna_hallmark_of_cancer) Insensitivity to Antigrowth Signals = mirna_hallmark_of_cancer
+hsa-mir-637_hsa-mir-523 (mirna_hallmark_of_cancer) Sustained Angiogenesis = mirna_hallmark_of_cancer
+hsa-mir-637_hsa-mir-523 (mirna_hallmark_of_cancer) Tumor Promoting Inflammation = mirna_hallmark_of_cancer
+hsa-mir-637_hsa-mir-523 (mirna_hallmark_of_cancer) Evading Immune Detection = mirna_hallmark_of_cancer
+hsa-mir-637_hsa-mir-523 (mirna_hallmark_of_cancer) Tissue Invasion and Metastasis = mirna_hallmark_of_cancer
+IDC Breast Radvanyi.39 (tissue_cluster) Breast = tissue_cluster
+END Ovarian Hendrix.6 (tissue_cluster) Ovarian = tissue_cluster
+Breast (tissue_cluster) CA Breast Sorlie.17 = tissue_cluster
+Breast (tissue_cluster) IDC Breast Radvanyi.16 = tissue_cluster
+Breast (tissue_cluster) CA Breast Richardson.55 = tissue_cluster
+Breast (tissue_cluster) CA Breast Sorlie.23 = tissue_cluster
+Breast (tissue_cluster) IDC Breast Radvanyi.65 = tissue_cluster
+Breast (tissue_cluster) IDC Breast Radvanyi.24 = tissue_cluster
+hsa-mir-185 (mirna_hallmark_of_cancer) Self Sufficiency in Growth Signals = mirna_hallmark_of_cancer
+hsa-mir-185 (mirna_hallmark_of_cancer) Insensitivity to Antigrowth Signals = mirna_hallmark_of_cancer
+hsa-mir-185 (cluster_mirna) AC Brain Sun.22 = cluster_mirna
+SQ Lung Bhattacharjee.22 (tissue_cluster) Lung = tissue_cluster
+SQ Lung Bhattacharjee.23 (cluster_mirna) hsa-mir-586 = cluster_mirna
+SQ Lung Bhattacharjee.23 (tissue_cluster) Lung = tissue_cluster
+hsa-mir-153 (mirna_hallmark_of_cancer) Insensitivity to Antigrowth Signals = mirna_hallmark_of_cancer
+hsa-mir-153 (mirna_hallmark_of_cancer) Self Sufficiency in Growth Signals = mirna_hallmark_of_cancer
+IDC Breast Radvanyi.24 (cluster_mirna) hsa-mir-1291 = cluster_mirna
+AD Lung Beer.9 (tissue_cluster) Lung = tissue_cluster
+hsa-mir-507_hsa-mir-557 (mirna_hallmark_of_cancer) Self Sufficiency in Growth Signals = mirna_hallmark_of_cancer
+hsa-mir-507_hsa-mir-557 (mirna_hallmark_of_cancer) Genome Instability and Mutation = mirna_hallmark_of_cancer
+hsa-mir-507_hsa-mir-557 (mirna_hallmark_of_cancer) Insensitivity to Antigrowth Signals = mirna_hallmark_of_cancer
+hsa-mir-507_hsa-mir-557 (cluster_mirna) CA Colon Graudens.40 = cluster_mirna
+hsa-mir-507_hsa-mir-557 (mirna_hallmark_of_cancer) Tumor Promoting Inflammation = mirna_hallmark_of_cancer
+hsa-mir-507_hsa-mir-557 (mirna_hallmark_of_cancer) Evading Immune Detection = mirna_hallmark_of_cancer
+hsa-mir-507_hsa-mir-557 (mirna_hallmark_of_cancer) Tissue Invasion and Metastasis = mirna_hallmark_of_cancer
+GL Brain Rickman.16 (cluster_mirna) hsa-mir-586 = cluster_mirna
+GL Brain Rickman.16 (tissue_cluster) Brain = tissue_cluster
+END Ovarian Hendrix.32 (cluster_mirna) hsa-mir-802 = cluster_mirna
+END Ovarian Hendrix.32 (tissue_cluster) Ovarian = tissue_cluster
+AD Lung Beer.5 (cluster_mirna) hsa-mir-1292 = cluster_mirna
+AD Lung Beer.5 (tissue_cluster) Lung = tissue_cluster
+AC Brain Sun.16 (tissue_cluster) Brain = tissue_cluster
+AC Brain Sun.16 (cluster_mirna) hsa-mir-655 = cluster_mirna
+END Ovarian Hendrix.35 (tissue_cluster) Ovarian = tissue_cluster
+END Ovarian Hendrix.35 (cluster_mirna) hsa-mir-1276 = cluster_mirna
+hsa-mir-621 (mirna_hallmark_of_cancer) Self Sufficiency in Growth Signals = mirna_hallmark_of_cancer
+hsa-mir-621 (mirna_hallmark_of_cancer) Tumor Promoting Inflammation = mirna_hallmark_of_cancer
+hsa-mir-621 (mirna_hallmark_of_cancer) Insensitivity to Antigrowth Signals = mirna_hallmark_of_cancer
+hsa-mir-621 (mirna_hallmark_of_cancer) Genome Instability and Mutation = mirna_hallmark_of_cancer
+hsa-mir-621 (mirna_hallmark_of_cancer) Evading Immune Detection = mirna_hallmark_of_cancer
+hsa-mir-621 (mirna_hallmark_of_cancer) Tissue Invasion and Metastasis = mirna_hallmark_of_cancer
+SRS Ovarian Hendrix.14 (cluster_mirna) hsa-mir-1290 = cluster_mirna
+SRS Ovarian Hendrix.14 (tissue_cluster) Ovarian = tissue_cluster
+hsa-mir-127-5p (mirna_hallmark_of_cancer) Genome Instability and Mutation = mirna_hallmark_of_cancer
+hsa-mir-127-5p (cluster_mirna) CCC Ovarian Hendrix.33 = cluster_mirna
+hsa-mir-127-5p (mirna_hallmark_of_cancer) Insensitivity to Antigrowth Signals = mirna_hallmark_of_cancer
+hsa-mir-1292 (mirna_hallmark_of_cancer) Self Sufficiency in Growth Signals = mirna_hallmark_of_cancer
+hsa-mir-1292 (mirna_hallmark_of_cancer) Insensitivity to Antigrowth Signals = mirna_hallmark_of_cancer
+hsa-mir-1290 (mirna_hallmark_of_cancer) Sustained Angiogenesis = mirna_hallmark_of_cancer
+hsa-mir-1290 (mirna_hallmark_of_cancer) Self Sufficiency in Growth Signals = mirna_hallmark_of_cancer
+hsa-mir-1290 (mirna_hallmark_of_cancer) Insensitivity to Antigrowth Signals = mirna_hallmark_of_cancer
+hsa-mir-1290 (mirna_hallmark_of_cancer) Tissue Invasion and Metastasis = mirna_hallmark_of_cancer
+hsa-mir-1291 (mirna_hallmark_of_cancer) Self Sufficiency in Growth Signals = mirna_hallmark_of_cancer
+hsa-mir-1291 (mirna_hallmark_of_cancer) Genome Instability and Mutation = mirna_hallmark_of_cancer
+hsa-mir-1291 (mirna_hallmark_of_cancer) Insensitivity to Antigrowth Signals = mirna_hallmark_of_cancer
+hsa-mir-1291 (mirna_hallmark_of_cancer) Tumor Promoting Inflammation = mirna_hallmark_of_cancer
+hsa-mir-1291 (mirna_hallmark_of_cancer) Evading Immune Detection = mirna_hallmark_of_cancer
+hsa-mir-1291 (mirna_hallmark_of_cancer) Tissue Invasion and Metastasis = mirna_hallmark_of_cancer
+hsa-mir-579 (cluster_mirna) TU Prostate Lapointe.7 = cluster_mirna
+hsa-mir-579 (mirna_hallmark_of_cancer) Sustained Angiogenesis = mirna_hallmark_of_cancer
+CA Bladder Dyrskjot.82 (cluster_mirna) hsa-mir-519d = cluster_mirna
+GL Brain Rickman.2 (tissue_cluster) Brain = tissue_cluster
+GLB Brain Sun.41 (tissue_cluster) Brain = tissue_cluster
+hsa-mir-200b_hsa-mir-200c_hsa-mir-200a (mirna_hallmark_of_cancer) Sustained Angiogenesis = mirna_hallmark_of_cancer
+hsa-mir-200b_hsa-mir-200c_hsa-mir-200a (cluster_mirna) ME Melanoma Hoek.35 = cluster_mirna
+CCC Ovarian Hendrix.11 (tissue_cluster) Ovarian = tissue_cluster
+GL Brain Rickman.8 (tissue_cluster) Brain = tissue_cluster
+GL Brain Rickman.8 (cluster_mirna) hsa-mir-634 = cluster_mirna
+OD Brain Bredel.15 (tissue_cluster) Brain = tissue_cluster
+Melanoma (tissue_cluster) ME Melanoma Hoek.35 = tissue_cluster
+Self Sufficiency in Growth Signals (mirna_hallmark_of_cancer) hsa-mir-802 = mirna_hallmark_of_cancer
+Self Sufficiency in Growth Signals (mirna_hallmark_of_cancer) hsa-mir-376a_hsa-mir-376b_hsa-mir-376c = mirna_hallmark_of_cancer
+Self Sufficiency in Growth Signals (mirna_hallmark_of_cancer) hsa-mir-1245_hsa-mir-1245b-5p = mirna_hallmark_of_cancer
+Self Sufficiency in Growth Signals (mirna_hallmark_of_cancer) hsa-mir-634 = mirna_hallmark_of_cancer
+Self Sufficiency in Growth Signals (mirna_hallmark_of_cancer) hsa-mir-222 = mirna_hallmark_of_cancer
+Self Sufficiency in Growth Signals (mirna_hallmark_of_cancer) hsa-mir-548d-3p = mirna_hallmark_of_cancer
+Self Sufficiency in Growth Signals (mirna_hallmark_of_cancer) hsa-mir-586 = mirna_hallmark_of_cancer
+Self Sufficiency in Growth Signals (mirna_hallmark_of_cancer) hsa-mir-939 = mirna_hallmark_of_cancer
+Self Sufficiency in Growth Signals (mirna_hallmark_of_cancer) hsa-mir-1207-5p = mirna_hallmark_of_cancer
+Self Sufficiency in Growth Signals (mirna_hallmark_of_cancer) hsa-mir-615-3p = mirna_hallmark_of_cancer
+Self Sufficiency in Growth Signals (mirna_hallmark_of_cancer) hsa-mir-331-3p = mirna_hallmark_of_cancer
+Self Sufficiency in Growth Signals (mirna_hallmark_of_cancer) hsa-mir-607 = mirna_hallmark_of_cancer
+Self Sufficiency in Growth Signals (mirna_hallmark_of_cancer) hsa-mir-296-5p = mirna_hallmark_of_cancer
+Self Sufficiency in Growth Signals (mirna_hallmark_of_cancer) hsa-mir-340 = mirna_hallmark_of_cancer
+Self Sufficiency in Growth Signals (mirna_hallmark_of_cancer) hsa-mir-519d = mirna_hallmark_of_cancer
+Self Sufficiency in Growth Signals (mirna_hallmark_of_cancer) hsa-mir-29b_hsa-mir-29c_hsa-mir-29a_hsa-mir-767-5p_hsa-mir-450b-5p = mirna_hallmark_of_cancer
+AC Brain Sun.22 (tissue_cluster) Brain = tissue_cluster
+hsa-mir-802 (cluster_mirna) IDC Breast Radvanyi.65 = cluster_mirna
+hsa-mir-802 (mirna_hallmark_of_cancer) Insensitivity to Antigrowth Signals = mirna_hallmark_of_cancer
+END Ovarian Hendrix.22 (cluster_mirna) hsa-mir-944 = cluster_mirna
+END Ovarian Hendrix.22 (tissue_cluster) Ovarian = tissue_cluster
+hsa-mir-376a_hsa-mir-376b_hsa-mir-376c (mirna_hallmark_of_cancer) Genome Instability and Mutation = mirna_hallmark_of_cancer
+hsa-mir-376a_hsa-mir-376b_hsa-mir-376c (mirna_hallmark_of_cancer) Insensitivity to Antigrowth Signals = mirna_hallmark_of_cancer
+hsa-mir-376a_hsa-mir-376b_hsa-mir-376c (mirna_hallmark_of_cancer) Sustained Angiogenesis = mirna_hallmark_of_cancer
+hsa-mir-376a_hsa-mir-376b_hsa-mir-376c (mirna_hallmark_of_cancer) Tumor Promoting Inflammation = mirna_hallmark_of_cancer
+hsa-mir-376a_hsa-mir-376b_hsa-mir-376c (mirna_hallmark_of_cancer) Evading Immune Detection = mirna_hallmark_of_cancer
+hsa-mir-376a_hsa-mir-376b_hsa-mir-376c (mirna_hallmark_of_cancer) Tissue Invasion and Metastasis = mirna_hallmark_of_cancer
+hsa-mir-655 (mirna_hallmark_of_cancer) Genome Instability and Mutation = mirna_hallmark_of_cancer
+hsa-mir-634 (mirna_hallmark_of_cancer) Insensitivity to Antigrowth Signals = mirna_hallmark_of_cancer
+hsa-mir-634 (mirna_hallmark_of_cancer) Tumor Promoting Inflammation = mirna_hallmark_of_cancer
+hsa-mir-634 (mirna_hallmark_of_cancer) Evading Immune Detection = mirna_hallmark_of_cancer
+hsa-mir-634 (mirna_hallmark_of_cancer) Tissue Invasion and Metastasis = mirna_hallmark_of_cancer
+Genome Instability and Mutation (mirna_hallmark_of_cancer) hsa-mir-25 = mirna_hallmark_of_cancer
+Genome Instability and Mutation (mirna_hallmark_of_cancer) hsa-mir-1245_hsa-mir-1245b-5p = mirna_hallmark_of_cancer
+Genome Instability and Mutation (mirna_hallmark_of_cancer) hsa-mir-101 = mirna_hallmark_of_cancer
+Genome Instability and Mutation (mirna_hallmark_of_cancer) hsa-mir-548d-3p = mirna_hallmark_of_cancer
+Genome Instability and Mutation (mirna_hallmark_of_cancer) hsa-mir-96 = mirna_hallmark_of_cancer
+Genome Instability and Mutation (mirna_hallmark_of_cancer) hsa-mir-1276 = mirna_hallmark_of_cancer
+Genome Instability and Mutation (mirna_hallmark_of_cancer) hsa-mir-331-3p = mirna_hallmark_of_cancer
+Genome Instability and Mutation (mirna_hallmark_of_cancer) hsa-mir-296-5p = mirna_hallmark_of_cancer
+Genome Instability and Mutation (mirna_hallmark_of_cancer) hsa-mir-654-5p = mirna_hallmark_of_cancer
+Genome Instability and Mutation (mirna_hallmark_of_cancer) hsa-mir-519d = mirna_hallmark_of_cancer
+Genome Instability and Mutation (mirna_hallmark_of_cancer) hsa-mir-338-5p = mirna_hallmark_of_cancer
+Genome Instability and Mutation (mirna_hallmark_of_cancer) hsa-mir-1264 = mirna_hallmark_of_cancer
+Leukemia (tissue_cluster) B-CLL Leukemia Haslinger.9 = tissue_cluster
+Leukemia (tissue_cluster) B-CLL Leukemia Haslinger.62 = tissue_cluster
+AD Lung Beer.43 (tissue_cluster) Lung = tissue_cluster
+AC Brain Sun.5 (tissue_cluster) Brain = tissue_cluster
+Prostate (tissue_cluster) TU Prostate Lapointe.7 = tissue_cluster
+hsa-mir-1207-5p (cluster_mirna) AD Ovarian Welsh.22 = cluster_mirna
+hsa-mir-1207-5p (mirna_hallmark_of_cancer) Insensitivity to Antigrowth Signals = mirna_hallmark_of_cancer
+hsa-mir-615-3p (cluster_mirna) HSCC Head-Neck Cromer.18 = cluster_mirna
+hsa-mir-615-3p (mirna_hallmark_of_cancer) Insensitivity to Antigrowth Signals = mirna_hallmark_of_cancer
+hsa-mir-331-3p (mirna_hallmark_of_cancer) Insensitivity to Antigrowth Signals = mirna_hallmark_of_cancer
+hsa-mir-331-3p (mirna_hallmark_of_cancer) Sustained Angiogenesis = mirna_hallmark_of_cancer
+hsa-mir-331-3p (mirna_hallmark_of_cancer) Tumor Promoting Inflammation = mirna_hallmark_of_cancer
+hsa-mir-331-3p (mirna_hallmark_of_cancer) Limitless Replicative Potential = mirna_hallmark_of_cancer
+hsa-mir-331-3p (cluster_mirna) SMCL Lung Bhattacharjee.61 = cluster_mirna
+hsa-mir-331-3p (mirna_hallmark_of_cancer) Evading Immune Detection = mirna_hallmark_of_cancer
+hsa-mir-331-3p (mirna_hallmark_of_cancer) Tissue Invasion and Metastasis = mirna_hallmark_of_cancer
+Sustained Angiogenesis (mirna_hallmark_of_cancer) hsa-mir-767-5p = mirna_hallmark_of_cancer
+Sustained Angiogenesis (mirna_hallmark_of_cancer) hsa-mir-296-5p = mirna_hallmark_of_cancer
+Sustained Angiogenesis (mirna_hallmark_of_cancer) hsa-mir-519d = mirna_hallmark_of_cancer
+Sustained Angiogenesis (mirna_hallmark_of_cancer) hsa-mir-29b_hsa-mir-29c_hsa-mir-29a_hsa-mir-767-5p_hsa-mir-450b-5p = mirna_hallmark_of_cancer
+Sustained Angiogenesis (mirna_hallmark_of_cancer) hsa-mir-222 = mirna_hallmark_of_cancer
+GL Brain Bredel.79 (tissue_cluster) Brain = tissue_cluster
+GL Brain Bredel.79 (cluster_mirna) hsa-mir-340 = cluster_mirna
+hsa-mir-607 (mirna_hallmark_of_cancer) Insensitivity to Antigrowth Signals = mirna_hallmark_of_cancer
+Evading Immune Detection (mirna_hallmark_of_cancer) hsa-mir-325 = mirna_hallmark_of_cancer
+Evading Immune Detection (mirna_hallmark_of_cancer) hsa-mir-1245_hsa-mir-1245b-5p = mirna_hallmark_of_cancer
+Evading Immune Detection (mirna_hallmark_of_cancer) hsa-mir-519d = mirna_hallmark_of_cancer
+Evading Immune Detection (mirna_hallmark_of_cancer) hsa-mir-586 = mirna_hallmark_of_cancer
+SMCL Lung Bhattacharjee.35 (tissue_cluster) Lung = tissue_cluster
+hsa-mir-96 (cluster_mirna) CA Colon Graudens.38 = cluster_mirna
+COID Lung Bhattacharjee.92 (tissue_cluster) Lung = tissue_cluster
+AD Lung Stearman.19 (tissue_cluster) Lung = tissue_cluster
+hsa-mir-767-5p (mirna_hallmark_of_cancer) Tissue Invasion and Metastasis = mirna_hallmark_of_cancer
+hsa-mir-767-5p (mirna_hallmark_of_cancer) Insensitivity to Antigrowth Signals = mirna_hallmark_of_cancer
+hsa-mir-767-5p (cluster_mirna) AD Ovarian Welsh.20 = cluster_mirna
+hsa-mir-325 (mirna_hallmark_of_cancer) Tumor Promoting Inflammation = mirna_hallmark_of_cancer
+hsa-mir-325 (mirna_hallmark_of_cancer) Tissue Invasion and Metastasis = mirna_hallmark_of_cancer
+AD Lung Beer.32 (tissue_cluster) Lung = tissue_cluster
+SQ Lung Bhattacharjee.13 (tissue_cluster) Lung = tissue_cluster
+SQ Lung Bhattacharjee.13 (cluster_mirna) hsa-mir-296-5p = cluster_mirna
+CCC Ovarian Hendrix.33 (tissue_cluster) Ovarian = tissue_cluster
+Lung (tissue_cluster) AD Lung Bhattacharjee.0 = tissue_cluster
+Lung (tissue_cluster) SMCL Lung Bhattacharjee.61 = tissue_cluster
+Lung (tissue_cluster) COID Lung Bhattacharjee.24 = tissue_cluster
+Lung (tissue_cluster) AD Lung Beer.35 = tissue_cluster
+AD Lung Beer.35 (cluster_mirna) hsa-mir-222 = cluster_mirna
+hsa-mir-29b_hsa-mir-29c_hsa-mir-29a_hsa-mir-767-5p_hsa-mir-450b-5p (mirna_hallmark_of_cancer) Insensitivity to Antigrowth Signals = mirna_hallmark_of_cancer
+hsa-mir-29b_hsa-mir-29c_hsa-mir-29a_hsa-mir-767-5p_hsa-mir-450b-5p (mirna_hallmark_of_cancer) Tissue Invasion and Metastasis = mirna_hallmark_of_cancer
+hsa-mir-338-5p (cluster_mirna) AD Lung Bhattacharjee.0 = cluster_mirna
+hsa-mir-338-5p (mirna_hallmark_of_cancer) Insensitivity to Antigrowth Signals = mirna_hallmark_of_cancer
+CA Bladder Dyrskjot.40 (cluster_mirna) hsa-mir-548d-3p = cluster_mirna
+hsa-mir-25 (mirna_hallmark_of_cancer) Insensitivity to Antigrowth Signals = mirna_hallmark_of_cancer
+B-CLL Leukemia Haslinger.9 (cluster_mirna) hsa-mir-1245_hsa-mir-1245b-5p = cluster_mirna
+Ovarian (tissue_cluster) AD Ovarian Welsh.26 = tissue_cluster
+Ovarian (tissue_cluster) AD Ovarian Welsh.22 = tissue_cluster
+Ovarian (tissue_cluster) AD Ovarian Welsh.20 = tissue_cluster
+hsa-mir-1245_hsa-mir-1245b-5p (mirna_hallmark_of_cancer) Insensitivity to Antigrowth Signals = mirna_hallmark_of_cancer
+hsa-mir-1245_hsa-mir-1245b-5p (mirna_hallmark_of_cancer) Tumor Promoting Inflammation = mirna_hallmark_of_cancer
+hsa-mir-1245_hsa-mir-1245b-5p (mirna_hallmark_of_cancer) Tissue Invasion and Metastasis = mirna_hallmark_of_cancer
+hsa-mir-222 (mirna_hallmark_of_cancer) Insensitivity to Antigrowth Signals = mirna_hallmark_of_cancer
+hsa-mir-222 (mirna_hallmark_of_cancer) Tissue Invasion and Metastasis = mirna_hallmark_of_cancer
+Tissue Invasion and Metastasis (mirna_hallmark_of_cancer) hsa-mir-199b-3p_hsa-mir-199a-3p = mirna_hallmark_of_cancer
+Tissue Invasion and Metastasis (mirna_hallmark_of_cancer) hsa-mir-548d-3p = mirna_hallmark_of_cancer
+Tissue Invasion and Metastasis (mirna_hallmark_of_cancer) hsa-mir-586 = mirna_hallmark_of_cancer
+Tissue Invasion and Metastasis (mirna_hallmark_of_cancer) hsa-mir-296-5p = mirna_hallmark_of_cancer
+Tissue Invasion and Metastasis (mirna_hallmark_of_cancer) hsa-mir-507 = mirna_hallmark_of_cancer
+Tissue Invasion and Metastasis (mirna_hallmark_of_cancer) hsa-mir-519d = mirna_hallmark_of_cancer
+Tissue Invasion and Metastasis (mirna_hallmark_of_cancer) hsa-mir-944 = mirna_hallmark_of_cancer
+hsa-mir-101 (mirna_hallmark_of_cancer) Insensitivity to Antigrowth Signals = mirna_hallmark_of_cancer
+MM Myeloma Zhan.33 (cluster_mirna) hsa-mir-507 = cluster_mirna
+MM Myeloma Zhan.33 (tissue_cluster) Myeloma = tissue_cluster
+hsa-mir-548d-3p (mirna_hallmark_of_cancer) Insensitivity to Antigrowth Signals = mirna_hallmark_of_cancer
+Tumor Promoting Inflammation (mirna_hallmark_of_cancer) hsa-mir-519d = mirna_hallmark_of_cancer
+Tumor Promoting Inflammation (mirna_hallmark_of_cancer) hsa-mir-586 = mirna_hallmark_of_cancer
+CA Colon Graudens.38 (tissue_cluster) Colon = tissue_cluster
+hsa-mir-1276 (cluster_mirna) CA Bladder Dyrskjot.51 = cluster_mirna
+hsa-mir-586 (mirna_hallmark_of_cancer) Insensitivity to Antigrowth Signals = mirna_hallmark_of_cancer
+hsa-mir-586 (mirna_hallmark_of_cancer) Reprogramming Energy Metabolism = mirna_hallmark_of_cancer
+hsa-mir-939 (mirna_hallmark_of_cancer) Insensitivity to Antigrowth Signals = mirna_hallmark_of_cancer
+GL Brain Rickman.31 (tissue_cluster) Brain = tissue_cluster
+Myeloma (tissue_cluster) MM Myeloma Zhan.29 = tissue_cluster
+hsa-mir-296-5p (mirna_hallmark_of_cancer) Insensitivity to Antigrowth Signals = mirna_hallmark_of_cancer
+hsa-mir-340 (mirna_hallmark_of_cancer) Insensitivity to Antigrowth Signals = mirna_hallmark_of_cancer
+Insensitivity to Antigrowth Signals (mirna_hallmark_of_cancer) hsa-mir-519d = mirna_hallmark_of_cancer
+Insensitivity to Antigrowth Signals (mirna_hallmark_of_cancer) hsa-mir-1264 = mirna_hallmark_of_cancer
+CA Colon Graudens.40 (tissue_cluster) Colon = tissue_cluster
View
176 network/static/sig_overlap_network_0.05_type_node.attr
@@ -0,0 +1,176 @@
+type (class=String)
+GLB Brain Sun.36 = cluster
+SMCL Lung Bhattacharjee.36 = cluster
+hsa-mir-29b_hsa-mir-29c_hsa-mir-29a = mirna
+hsa-mir-920 = mirna
+SQ Lung Bhattacharjee.44 = cluster
+SQ Lung Bhattacharjee.45 = cluster
+hsa-mir-526b = mirna
+HSCC Head-Neck Chung.1 = cluster
+hsa-mir-370 = mirna
+CA Colon Graudens.35 = cluster
+TU Prostate Lapointe.23 = cluster
+hsa-mir-548c-3p = mirna
+ODGL Brain Sun.2 = cluster
+ODGL Brain Sun.32 = cluster
+GCT Seminoma Korkola.75 = cluster
+hsa-let-7e_hsa-let-7f_hsa-let-7g_hsa-let-7a_hsa-let-7b_hsa-let-7d_hsa-let-7i_hsa-mir-98_hsa-let-7c = mirna
+Bladder = tissue
+MM Myeloma Zhan.50 = cluster
+AD Lung Bhattacharjee.59 = cluster
+GBM Brain Liang.18 = cluster
+hsa-mir-34a = mirna
+hsa-mir-640 = mirna
+END Ovarian Hendrix.58 = cluster
+hsa-mir-760 = mirna
+GL Brain Bredel.30 = cluster
+hsa-mir-765 = mirna
+hsa-mir-212 = mirna
+AD Ovarian Welsh.1 = cluster
+hsa-mir-210 = mirna
+Evading Apoptosis = hallmark_of_cancer
+hsa-mir-369-5p = mirna
+ME Melanoma Hoek.50 = cluster
+hsa-mir-342-5p = mirna
+HSCC Head-Neck Cromer.25 = cluster
+hsa-mir-9 = mirna
+hsa-mir-548n_hsa-mir-607 = mirna
+GCT Seminoma Korkola.102 = cluster
+hsa-mir-1275 = mirna
+hsa-mir-423-5p = mirna
+AD Lung Bhattacharjee.49 = cluster
+GLB Brain Sun.29 = cluster
+hsa-mir-130b_hsa-mir-301a_hsa-mir-301b_hsa-mir-130a_hsa-mir-454 = mirna
+AD Lung Bhattacharjee.41 = cluster
+AD Lung Bhattacharjee.42 = cluster
+hsa-mir-656 = mirna
+hsa-mir-548l = mirna
+hsa-mir-548k = mirna
+TU Prostate Lapointe.37 = cluster
+hsa-mir-718 = mirna
+GCT Seminoma Korkola.4 = cluster
+SMCL Lung Bhattacharjee.25 = cluster
+hsa-mir-125a-3p = mirna
+hsa-mir-567 = mirna
+B-CLL Leukemia Haslinger.27 = cluster
+SRS Ovarian Hendrix.72 = cluster
+hsa-mir-28-5p = mirna
+Head-neck = tissue
+AD Lung Bhattacharjee.30 = cluster
+Mesothelioma = tissue
+AD Lung Beer.31 = cluster
+AD Ovarian Welsh.16 = cluster
+hsa-mir-708_hsa-mir-25_hsa-mir-32_hsa-mir-92a_hsa-mir-92b_hsa-mir-363_hsa-mir-367_hsa-mir-664 = mirna
+hsa-mir-637_hsa-mir-523 = mirna
+IDC Breast Radvanyi.39 = cluster
+END Ovarian Hendrix.6 = cluster
+Breast = tissue
+hsa-mir-185 = mirna
+SQ Lung Bhattacharjee.22 = cluster
+SQ Lung Bhattacharjee.23 = cluster
+hsa-mir-153 = mirna
+IDC Breast Radvanyi.24 = cluster
+AD Lung Beer.9 = cluster
+hsa-mir-507_hsa-mir-557 = mirna
+IDC Breast Radvanyi.16 = cluster
+GL Brain Rickman.16 = cluster
+END Ovarian Hendrix.32 = cluster
+AD Lung Beer.5 = cluster
+CA Breast Richardson.55 = cluster
+AC Brain Sun.16 = cluster
+END Ovarian Hendrix.35 = cluster
+Seminoma = tissue
+hsa-mir-621 = mirna
+SRS Ovarian Hendrix.14 = cluster
+hsa-mir-127-5p = mirna
+hsa-mir-1292 = mirna
+hsa-mir-1290 = mirna
+hsa-mir-1291 = mirna
+CA Breast Sorlie.17 = cluster
+hsa-mir-579 = mirna
+CA Bladder Dyrskjot.82 = cluster
+GL Brain Rickman.2 = cluster
+GLB Brain Sun.41 = cluster
+hsa-mir-200b_hsa-mir-200c_hsa-mir-200a = mirna
+CCC Ovarian Hendrix.11 = cluster
+GL Brain Rickman.8 = cluster
+OD Brain Bredel.15 = cluster
+Melanoma = tissue
+Self Sufficiency in Growth Signals = hallmark_of_cancer
+AC Brain Sun.22 = cluster
+hsa-mir-802 = mirna
+END Ovarian Hendrix.22 = cluster
+hsa-mir-376a_hsa-mir-376b_hsa-mir-376c = mirna
+hsa-mir-655 = mirna
+hsa-mir-634 = mirna
+ME Melanoma Hoek.35 = cluster
+Genome Instability and Mutation = hallmark_of_cancer
+Leukemia = tissue
+AD Lung Beer.43 = cluster
+AC Brain Sun.5 = cluster
+Prostate = tissue
+hsa-mir-1207-5p = mirna
+hsa-mir-615-3p = mirna
+hsa-mir-331-3p = mirna
+Sustained Angiogenesis = hallmark_of_cancer
+GL Brain Bredel.79 = cluster
+hsa-mir-607 = mirna
+Evading Immune Detection = hallmark_of_cancer
+SMCL Lung Bhattacharjee.35 = cluster
+hsa-mir-96 = mirna
+COID Lung Bhattacharjee.92 = cluster
+AD Lung Stearman.19 = cluster
+hsa-mir-767-5p = mirna
+hsa-mir-325 = mirna
+TU Prostate Lapointe.7 = cluster
+AD Lung Beer.32 = cluster
+SQ Lung Bhattacharjee.13 = cluster
+CCC Ovarian Hendrix.33 = cluster
+Lung = tissue
+AD Lung Beer.35 = cluster
+hsa-mir-29b_hsa-mir-29c_hsa-mir-29a_hsa-mir-767-5p_hsa-mir-450b-5p = mirna
+hsa-mir-338-5p = mirna
+CA Bladder Dyrskjot.40 = cluster
+hsa-mir-25 = mirna
+B-CLL Leukemia Haslinger.9 = cluster
+Ovarian = tissue
+hsa-mir-1245_hsa-mir-1245b-5p = mirna
+AD Lung Bhattacharjee.0 = cluster
+SMCL Lung Bhattacharjee.61 = cluster
+hsa-mir-222 = mirna
+Tissue Invasion and Metastasis = hallmark_of_cancer
+HSCC Head-Neck Cromer.18 = cluster
+hsa-mir-101 = mirna
+MM Myeloma Zhan.33 = cluster
+hsa-mir-199b-3p_hsa-mir-199a-3p = mirna
+CA Breast Sorlie.23 = cluster
+hsa-mir-548d-3p = mirna
+IDC Breast Radvanyi.65 = cluster
+Tumor Promoting Inflammation = hallmark_of_cancer
+B-CLL Leukemia Haslinger.62 = cluster
+Limitless Replicative Potential = hallmark_of_cancer
+hsa-mir-654-5p = mirna
+CA Colon Graudens.38 = cluster
+hsa-mir-1276 = mirna
+hsa-mir-586 = mirna
+hsa-mir-939 = mirna
+GL Brain Rickman.31 = cluster
+MPM Mesothelioma Gordon.7 = cluster
+Myeloma = tissue
+CA Bladder Dyrskjot.51 = cluster
+hsa-mir-296-5p = mirna
+COID Lung Bhattacharjee.24 = cluster
+hsa-mir-507 = mirna
+MM Myeloma Zhan.29 = cluster
+hsa-mir-340 = mirna
+AD Ovarian Welsh.26 = cluster
+AD Ovarian Welsh.22 = cluster
+Insensitivity to Antigrowth Signals = hallmark_of_cancer
+AD Ovarian Welsh.20 = cluster
+CA Colon Graudens.40 = cluster
+Brain = tissue
+Colon = tissue
+Reprogramming Energy Metabolism = hallmark_of_cancer
+hsa-mir-519d = mirna
+hsa-mir-944 = mirna
+hsa-mir-1264 = mirna
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86 network/static/sig_overlap_network_0.05_validated_edge.attr
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+validated (class=String)
+GLB Brain Sun.36 (1) hsa-mir-423-5p = 1
+SMCL Lung Bhattacharjee.36 (1) hsa-mir-296-5p = 1
+hsa-mir-29b_hsa-mir-29c_hsa-mir-29a (0) AD Lung Beer.31 = 0
+hsa-mir-29b_hsa-mir-29c_hsa-mir-29a (0) AD Lung Bhattacharjee.59 = 0
+hsa-mir-29b_hsa-mir-29c_hsa-mir-29a (0) END Ovarian Hendrix.6 = 0
+hsa-mir-29b_hsa-mir-29c_hsa-mir-29a (0) CCC Ovarian Hendrix.11 = 0
+hsa-mir-920 (1) COID Lung Bhattacharjee.92 = 1
+SQ Lung Bhattacharjee.44 (1) hsa-mir-767-5p = 1
+SQ Lung Bhattacharjee.45 (1) hsa-mir-654-5p = 1
+hsa-mir-526b (1) MPM Mesothelioma Gordon.7 = 1
+HSCC Head-Neck Chung.1 (0) hsa-mir-29b_hsa-mir-29c_hsa-mir-29a_hsa-mir-767-5p_hsa-mir-450b-5p = 0
+hsa-mir-370 (1) AD Lung Stearman.19 = 1
+CA Colon Graudens.35 (1) hsa-mir-325 = 1
+TU Prostate Lapointe.23 (0) hsa-mir-25 = 0
+hsa-mir-548c-3p (1) B-CLL Leukemia Haslinger.62 = 1
+hsa-mir-548c-3p (1) ME Melanoma Hoek.50 = 1
+ODGL Brain Sun.2 (1) hsa-mir-939 = 1
+ODGL Brain Sun.32 (1) hsa-mir-153 = 1
+GCT Seminoma Korkola.75 (0) hsa-mir-708_hsa-mir-25_hsa-mir-32_hsa-mir-92a_hsa-mir-92b_hsa-mir-363_hsa-mir-367_hsa-mir-664 = 0
+hsa-let-7e_hsa-let-7f_hsa-let-7g_hsa-let-7a_hsa-let-7b_hsa-let-7d_hsa-let-7i_hsa-mir-98_hsa-let-7c (0) GL Brain Rickman.31 = 0
+MM Myeloma Zhan.50 (1) hsa-mir-28-5p = 1
+GBM Brain Liang.18 (1) hsa-mir-369-5p = 1
+hsa-mir-34a (1) GCT Seminoma Korkola.102 = 1
+hsa-mir-640 (1) CA Breast Sorlie.17 = 1
+END Ovarian Hendrix.58 (1) hsa-mir-621 = 1
+hsa-mir-760 (1) MM Myeloma Zhan.29 = 1
+hsa-mir-760 (1) B-CLL Leukemia Haslinger.27 = 1
+hsa-mir-760 (1) GLB Brain Sun.41 = 1
+hsa-mir-760 (1) AD Lung Bhattacharjee.42 = 1
+GL Brain Bredel.30 (0) hsa-mir-342-5p = 0
+hsa-mir-765 (1) OD Brain Bredel.15 = 1
+hsa-mir-212 (0) SMCL Lung Bhattacharjee.35 = 0
+AD Ovarian Welsh.1 (1) hsa-mir-548d-3p = 1
+hsa-mir-210 (1) AD Ovarian Welsh.26 = 1
+hsa-mir-342-5p (1) COID Lung Bhattacharjee.24 = 1
+HSCC Head-Neck Cromer.25 (1) hsa-mir-1264 = 1
+hsa-mir-9 (0) IDC Breast Radvanyi.16 = 0
+hsa-mir-548n_hsa-mir-607 (1) SQ Lung Bhattacharjee.22 = 1
+hsa-mir-1275 (1) GLB Brain Sun.29 = 1
+hsa-mir-1275 (1) AD Lung Beer.43 = 1
+hsa-mir-423-5p (1) CA Breast Sorlie.23 = 1
+AD Lung Bhattacharjee.49 (1) hsa-mir-567 = 1
+hsa-mir-130b_hsa-mir-301a_hsa-mir-301b_hsa-mir-130a_hsa-mir-454 (1) CA Breast Richardson.55 = 1
+AD Lung Bhattacharjee.41 (1) hsa-mir-296-5p = 1
+hsa-mir-656 (1) AD Lung Beer.32 = 1
+hsa-mir-548l (1) AD Ovarian Welsh.16 = 1
+hsa-mir-548k (1) AD Lung Beer.9 = 1
+TU Prostate Lapointe.37 (0) hsa-mir-199b-3p_hsa-mir-199a-3p = 0
+hsa-mir-718 (1) GL Brain Rickman.2 = 1
+GCT Seminoma Korkola.4 (1) hsa-mir-376a_hsa-mir-376b_hsa-mir-376c = 1
+SMCL Lung Bhattacharjee.25 (0) hsa-mir-101 = 0
+hsa-mir-125a-3p (1) IDC Breast Radvanyi.39 = 1
+SRS Ovarian Hendrix.72 (1) hsa-mir-1276 = 1
+AD Lung Bhattacharjee.30 (1) hsa-mir-607 = 1
+hsa-mir-637_hsa-mir-523 (1) AC Brain Sun.5 = 1
+hsa-mir-185 (1) AC Brain Sun.22 = 1
+SQ Lung Bhattacharjee.23 (1) hsa-mir-586 = 1
+IDC Breast Radvanyi.24 (1) hsa-mir-1291 = 1
+hsa-mir-507_hsa-mir-557 (1) CA Colon Graudens.40 = 1
+GL Brain Rickman.16 (1) hsa-mir-586 = 1
+END Ovarian Hendrix.32 (1) hsa-mir-802 = 1
+AD Lung Beer.5 (1) hsa-mir-1292 = 1
+AC Brain Sun.16 (1) hsa-mir-655 = 1
+END Ovarian Hendrix.35 (1) hsa-mir-1276 = 1
+SRS Ovarian Hendrix.14 (1) hsa-mir-1290 = 1
+hsa-mir-127-5p (0) CCC Ovarian Hendrix.33 = 0
+hsa-mir-579 (1) TU Prostate Lapointe.7 = 1
+CA Bladder Dyrskjot.82 (1) hsa-mir-519d = 1
+hsa-mir-200b_hsa-mir-200c_hsa-mir-200a (0) ME Melanoma Hoek.35 = 0
+GL Brain Rickman.8 (1) hsa-mir-634 = 1
+hsa-mir-802 (1) IDC Breast Radvanyi.65 = 1
+END Ovarian Hendrix.22 (1) hsa-mir-944 = 1
+hsa-mir-1207-5p (1) AD Ovarian Welsh.22 = 1
+hsa-mir-615-3p (1) HSCC Head-Neck Cromer.18 = 1
+hsa-mir-331-3p (1) SMCL Lung Bhattacharjee.61 = 1
+GL Brain Bredel.79 (1) hsa-mir-340 = 1
+hsa-mir-96 (0) CA Colon Graudens.38 = 0
+hsa-mir-767-5p (1) AD Ovarian Welsh.20 = 1
+SQ Lung Bhattacharjee.13 (1) hsa-mir-296-5p = 1
+AD Lung Beer.35 (0) hsa-mir-222 = 0
+hsa-mir-338-5p (0) AD Lung Bhattacharjee.0 = 0
+CA Bladder Dyrskjot.40 (1) hsa-mir-548d-3p = 1
+B-CLL Leukemia Haslinger.9 (1) hsa-mir-1245_hsa-mir-1245b-5p = 1
+MM Myeloma Zhan.33 (1) hsa-mir-507 = 1
+hsa-mir-1276 (1) CA Bladder Dyrskjot.51 = 1
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16 network/tests.py
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+"""
+This file demonstrates writing tests using the unittest module. These will pass
+when you run "manage.py test".
+
+Replace this with more appropriate tests for your application.
+"""
+
+from django.test import TestCase
+
+
+class SimpleTest(TestCase):
+ def test_basic_addition(self):
+ """
+ Tests that 1 + 1 always equals 2.
+ """
+ self.assertEqual(1 + 1, 2)
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160 settings.py
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+# Django settings for Project project.
+
+DEBUG = True
+TEMPLATE_DEBUG = DEBUG
+
+ADMINS = (
+ # ('Your Name', 'your_email@example.com'),
+ ('cplaisier', 'cplaisier@sysetmsbiology.org'),
+)
+
+MANAGERS = ADMINS
+
+
+DATABASES = {
+ 'default': {
+ 'ENGINE': 'django.db.backends.postgresql_psycopg2',
+ 'NAME': 'djangostack',
+ 'HOST': '/opt/bitnami/postgresql',
+ 'PORT': '5432',
+ 'USER': 'postgres',
+ 'PASSWORD': 'bitnami'
+ }
+}
+
+EXAMPLE_DATABASES = {
+ 'default': {
+ 'ENGINE': 'django.db.backends.', # Add 'postgresql_psycopg2', 'postgresql', 'mysql', 'sqlite3' or 'oracle'.
+ 'NAME': '', # Or path to database file if using sqlite3.
+ 'USER': '', # Not used with sqlite3.
+ 'PASSWORD': '', # Not used with sqlite3.
+ 'HOST': '', # Set to empty string for localhost. Not used with sqlite3.
+ 'PORT': '', # Set to empty string for default. Not used with sqlite3.
+ }
+}
+
+# Local time zone for this installation. Choices can be found here:
+# http://en.wikipedia.org/wiki/List_of_tz_zones_by_name
+# although not all choices may be available on all operating systems.
+# On Unix systems, a value of None will cause Django to use the same
+# timezone as the operating system.
+# If running in a Windows environment this must be set to the same as your
+# system time zone.
+TIME_ZONE = 'America/Los_Angeles'
+
+# Language code for this installation. All choices can be found here:
+# http://www.i18nguy.com/unicode/language-identifiers.html
+LANGUAGE_CODE = 'en-us'
+
+SITE_ID = 1
+
+# If you set this to False, Django will make some optimizations so as not
+# to load the internationalization machinery.
+USE_I18N = True
+
+# If you set this to False, Django will not format dates, numbers and
+# calendars according to the current locale
+USE_L10N = True
+
+# Absolute filesystem path to the directory that will hold user-uploaded files.
+# Example: "/home/media/media.lawrence.com/media/"
+MEDIA_ROOT = ''
+
+# URL that handles the media served from MEDIA_ROOT. Make sure to use a
+# trailing slash.
+# Examples: "http://media.lawrence.com/media/", "http://example.com/media/"
+MEDIA_URL = ''
+
+# Absolute path to the directory static files should be collected to.
+# Don't put anything in this directory yourself; store your static files
+# in apps' "static/" subdirectories and in STATICFILES_DIRS.
+# Example: "/home/media/media.lawrence.com/static/"
+STATIC_ROOT = ''
+
+# URL prefix for static files.
+# Example: "http://media.lawrence.com/static/"
+STATIC_URL = '/static/'
+
+# URL prefix for admin static files -- CSS, JavaScript and images.
+# Make sure to use a trailing slash.
+# Examples: "http://foo.com/static/admin/", "/static/admin/".
+ADMIN_MEDIA_PREFIX='/static/admin/media/'
+
+# Additional locations of static files
+STATICFILES_DIRS = (
+ # Put strings here, like "/home/html/static" or "C:/www/django/static".
+ # Always use forward slashes, even on Windows.
+ # Don't forget to use absolute paths, not relative paths.
+)
+
+# List of finder classes that know how to find static files in
+# various locations.
+STATICFILES_FINDERS = (
+ 'django.contrib.staticfiles.finders.FileSystemFinder',
+ 'django.contrib.staticfiles.finders.AppDirectoriesFinder',
+# 'django.contrib.staticfiles.finders.DefaultStorageFinder',
+)
+
+# Make this unique, and don't share it with anybody.
+SECRET_KEY = 'mbar&vy5-gf95+f=#j@qz==4#t*i^82$!++r4w^+5pf1jz!)na'
+
+# List of callables that know how to import templates from various sources.
+TEMPLATE_LOADERS = (
+ 'django.template.loaders.filesystem.Loader',
+ 'django.template.loaders.app_directories.Loader',
+# 'django.template.loaders.eggs.Loader',
+)
+
+MIDDLEWARE_CLASSES = (
+ 'django.middleware.common.CommonMiddleware',
+ 'django.contrib.sessions.middleware.SessionMiddleware',
+ 'django.middleware.csrf.CsrfViewMiddleware',
+ 'django.contrib.auth.middleware.AuthenticationMiddleware',
+ 'django.contrib.messages.middleware.MessageMiddleware',
+)
+
+ROOT_URLCONF = 'Project.urls'
+
+TEMPLATE_DIRS = (
+ # Put strings here, like "/home/html/django_templates" or "C:/www/django/templates".
+ # Always use forward slashes, even on Windows.
+ # Don't forget to use absolute paths, not relative paths.
+ '/opt/bitnami/apps/django/django_projects/Project/templates',
+)
+
+INSTALLED_APPS = (
+ 'django.contrib.auth',
+ 'django.contrib.contenttypes',
+ 'django.contrib.sessions',
+ 'django.contrib.sites',
+ 'django.contrib.messages',
+ 'django.contrib.staticfiles',
+ # Uncomment the next line to enable the admin:
+ # 'django.contrib.admin',
+ # Uncomment the next line to enable admin documentation:
+ # 'django.contrib.admindocs',
+ 'network',
+)
+
+# A sample logging configuration. The only tangible logging
+# performed by this configuration is to send an email to
+# the site admins on every HTTP 500 error.
+# See http://docs.djangoproject.com/en/dev/topics/logging for
+# more details on how to customize your logging configuration.
+LOGGING = {
+ 'version': 1,
+ 'disable_existing_loggers': False,
+ 'handlers': {
+ 'mail_admins': {
+ 'level': 'ERROR',
+ 'class': 'django.utils.log.AdminEmailHandler'
+ }
+ },
+ 'loggers': {
+ 'django.request': {
+ 'handlers': ['mail_admins'],
+ 'level': 'ERROR',
+ 'propagate': True,
+ },
+ }
+}
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77 templates/base.html
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+<html>
+ <head>
+ <title>{% block title %}{% endblock %}</title>
+ <meta name="copyright" content="&copy; 2011 Institute for Systems Biology" />
+ <link rel='stylesheet' type='text/css' href='/static/cmrn.css' />
+ <script type="text/javascript">
+ var _gaq = _gaq || [];
+ _gaq.push(['_setAccount', 'UA-28298738-1']);
+ _gaq.push(['_trackPageview']);
+
+ (function() {
+ var ga = document.createElement('script'); ga.type = 'text/javascript'; ga.async = true;
+ ga.src = ('https:' == document.location.protocol ? 'https://ssl' : 'http://www') + '.google-analytics.com/ga.js';
+ var s = document.getElementsByTagName('script')[0]; s.parentNode.insertBefore(ga, s);
+ })();
+
+ </script>
+ {% block javascript %}{% endblock %}
+ </head>
+ <body>
+ <div id='header'>
+ <a href='/'><img src='/static/cancerMiRNARegulatoryNetwork.gif' /></a>
+ </div>
+ <div class='colmask threecol'>
+ <div class='colmid'>
+ <div class='colleft'>
+ <div class='col1'>
+ <!-- Column 1 start --!>
+ <p>