diff --git a/lib/bids-matlab b/lib/bids-matlab
index 71257b51..dd04a370 160000
--- a/lib/bids-matlab
+++ b/lib/bids-matlab
@@ -1 +1 @@
-Subproject commit 71257b51986f5075bb903eb090fe28b9b6dc3ebf
+Subproject commit dd04a3709dcbfd04255cd43ef1caced94872ddc8
diff --git a/src/userInputs.m b/src/userInputs.m
index 2f8ed4c0..1d9c3481 100644
--- a/src/userInputs.m
+++ b/src/userInputs.m
@@ -15,6 +15,8 @@
         cfg = struct('debug', []);
     end
 
+    cfg = checkCFG(cfg);
+
     [cfg, responses] = setDefaultResponses(cfg);
 
     if ~cfg.debug.do
diff --git a/tests/test_checkCFG.m b/tests/test_checkCFG.m
index 1f667a20..5deb56c4 100644
--- a/tests/test_checkCFG.m
+++ b/tests/test_checkCFG.m
@@ -89,7 +89,7 @@ function test_checkCfgBasic()
     expectedCfgStructure.subject.askGrpSess = [true true];
 
     expectedCfgStructure.verbose = 0;
-    
+
     expectedCfgStructure.useGUI = false;
 
     expectedCfgStructure.fileName.task = '';