diff --git a/src/batches/setBatchAbnormalitiesDetectLesion.m b/src/batches/setBatchAbnormalitiesDetectLesion.m new file mode 100755 index 00000000..337afe71 --- /dev/null +++ b/src/batches/setBatchAbnormalitiesDetectLesion.m @@ -0,0 +1,14 @@ +%----------------------------------------------------------------------- +% Job saved on 08-Mar-2021 12:47:16 by cfg_util (rev $Rev: 7345 $) +% spm SPM - SPM12 (7771) +% cfg_basicio BasicIO - Unknown +%----------------------------------------------------------------------- +matlabbatch{1}.spm.tools.ali.outliers_detection.step3tissue.step3patients = ''; +matlabbatch{1}.spm.tools.ali.outliers_detection.step3tissue.step3controls = ''; +matlabbatch{1}.spm.tools.ali.outliers_detection.step3tissue.step3Alpha = 0.5; +matlabbatch{1}.spm.tools.ali.outliers_detection.step3tissue.step3Lambda = -4; +spmDir = spm('dir'); +lesionMask = fullfile(spmDir, 'toolbox', 'ALI', 'Mask_image', 'mask_controls_vox2mm.nii'); +matlabbatch{1}.spm.tools.ali.outliers_detection.step3mask_thr = 0; +matlabbatch{1}.spm.tools.ali.outliers_detection.step3binary_thr = 0.3; +matlabbatch{1}.spm.tools.ali.outliers_detection.step3binary_size = 0.8; diff --git a/src/batches/setBatchLesionOverlapMap.m b/src/batches/setBatchLesionOverlapMap.m new file mode 100755 index 00000000..9cde37ad --- /dev/null +++ b/src/batches/setBatchLesionOverlapMap.m @@ -0,0 +1,6 @@ +%----------------------------------------------------------------------- +% Job saved on 08-Mar-2021 12:48:14 by cfg_util (rev $Rev: 7345 $) +% spm SPM - SPM12 (7771) +% cfg_basicio BasicIO - Unknown +%----------------------------------------------------------------------- +matlabbatch{1}.spm.tools.ali.lesion_overlap.lom = ''; diff --git a/src/batches/setBatchSegmentationDetectLesion.m b/src/batches/setBatchSegmentationDetectLesion.m new file mode 100755 index 00000000..eca11150 --- /dev/null +++ b/src/batches/setBatchSegmentationDetectLesion.m @@ -0,0 +1,16 @@ +%----------------------------------------------------------------------- +% Job saved on 08-Mar-2021 11:11:19 by cfg_util (rev $Rev: 7345 $) +% spm SPM - SPM12 (7771) +% cfg_basicio BasicIO - Unknown +%----------------------------------------------------------------------- +matlabbatch{1}.spm.tools.ali.unified_segmentation.step1data = ''; +spmDir = spm('dir'); +lesionPriorMap = fullfile(spmDir, 'toolbox', 'ALI', 'Priors_extraClass', 'wc4prior0.nii'); +matlabbatch{1}.spm.tools.ali.unified_segmentation.step1prior = {lesionPriorMap}; +matlabbatch{1}.spm.tools.ali.unified_segmentation.step1niti = 2; +matlabbatch{1}.spm.tools.ali.unified_segmentation.step1thr_prob = 0.333333333333333; +matlabbatch{1}.spm.tools.ali.unified_segmentation.step1thr_size = 0.8; +matlabbatch{1}.spm.tools.ali.unified_segmentation.step1coregister = 1; +matlabbatch{1}.spm.tools.ali.unified_segmentation.step1mask = {''}; +matlabbatch{1}.spm.tools.ali.unified_segmentation.step1vox = 2; +matlabbatch{1}.spm.tools.ali.unified_segmentation.step1fwhm = [8 8 8];