From 9d9270f84e05b16e7deafecb3317a22d5eda5e17 Mon Sep 17 00:00:00 2001
From: marcobarilari <marcobarilr@gmail.com>
Date: Mon, 10 Aug 2020 15:55:35 +0200
Subject: [PATCH 1/5] fix typo in the file name

---
 visualLocTanslational.m => visualLocTranslational.m | 0
 1 file changed, 0 insertions(+), 0 deletions(-)
 rename visualLocTanslational.m => visualLocTranslational.m (100%)

diff --git a/visualLocTanslational.m b/visualLocTranslational.m
similarity index 100%
rename from visualLocTanslational.m
rename to visualLocTranslational.m

From a5505119e4ce569e0b744b4bd61a4b92e9b0ac25 Mon Sep 17 00:00:00 2001
From: marcobarilari <marcobarilr@gmail.com>
Date: Tue, 11 Aug 2020 12:17:25 +0200
Subject: [PATCH 2/5] add comment fix name

---
 visualLocTranslational.m | 9 +++++----
 1 file changed, 5 insertions(+), 4 deletions(-)

diff --git a/visualLocTranslational.m b/visualLocTranslational.m
index 02b3524..1912a73 100644
--- a/visualLocTranslational.m
+++ b/visualLocTranslational.m
@@ -63,6 +63,7 @@
 
     disp(cfg);
 
+    % Show experiment instruction
     standByScreen(cfg);
 
     % prepare the KbQueue to collect responses
@@ -76,7 +77,7 @@
 
     getResponse('start', cfg.keyboard.responseBox);
 
-    WaitSecs(cfg.onsetDelay);
+    WaitSecs(cfg.timing.onsetDelay);
 
     %% For Each Block
 
@@ -125,13 +126,13 @@
             saveResponsesAndTriggers(responseEvents, cfg, logFile, triggerString);
 
             % wait for the inter-stimulus interval
-            WaitSecs(cfg.ISI);
+            WaitSecs(cfg.timing.ISI);
 
         end
 
         eyeTracker('StopRecordings', cfg);
 
-        WaitSecs(cfg.IBI);
+        WaitSecs(cfg.timing.IBI);
 
         % trigger monitoring
         triggerEvents = getResponse('check', cfg.keyboard.responseBox, cfg, ...
@@ -143,7 +144,7 @@
     end
 
     % End of the run for the BOLD to go down
-    WaitSecs(cfg.endDelay);
+    WaitSecs(cfg.timing.endDelay);
 
     cfg = getExperimentEnd(cfg);
 

From f72bc6fd6901abc525455d87acf8b8a8f03a297a Mon Sep 17 00:00:00 2001
From: marcobarilari <marcobarilr@gmail.com>
Date: Tue, 11 Aug 2020 12:17:38 +0200
Subject: [PATCH 3/5] update to new tidy naming for timing

---
 setParameters.m  | 10 +++++-----
 subfun/doDotMo.m |  2 +-
 2 files changed, 6 insertions(+), 6 deletions(-)

diff --git a/setParameters.m b/setParameters.m
index 5fb65fc..114e1e6 100644
--- a/setParameters.m
+++ b/setParameters.m
@@ -50,15 +50,15 @@
     % block length = (cfg.eventDuration + cfg.ISI) * cfg.design.nbEventsPerBlock
 
     % Time between blocs in secs
-    cfg.IBI = 1.8 * 3; % 8;
+    cfg.timing.IBI = 1.8 * 3; % 8;
     % Time between events in secs
-    cfg.ISI = 0.1;
+    cfg.timing.ISI = 0.1;
     % Number of seconds before the motion stimuli are presented
-    cfg.onsetDelay = .1;
+    cfg.timing.onsetDelay = .1;
     % Number of seconds after the end all the stimuli before ending the run
-    cfg.endDelay = .1;
+    cfg.timing.endDelay = .1;
 
-    cfg.eventDuration = 0.8; % second
+    cfg.timing.eventDuration = 0.8; % second
 
     %% Visual Stimulation
 
diff --git a/subfun/doDotMo.m b/subfun/doDotMo.m
index 23217c8..5978421 100644
--- a/subfun/doDotMo.m
+++ b/subfun/doDotMo.m
@@ -19,7 +19,7 @@
     dots = initDots(cfg, thisEvent);
 
     % Set for how many frames this event will last
-    framesLeft = floor(cfg.eventDuration / cfg.screen.ifi);
+    framesLeft = floor(cfg.timing.eventDuration / cfg.screen.ifi);
 
     %% Start the dots presentation
     vbl = Screen('Flip', cfg.screen.win);

From d0dd1f8afc736921f8716985e936d909553003b8 Mon Sep 17 00:00:00 2001
From: marcobarilari <marcobarilr@gmail.com>
Date: Tue, 11 Aug 2020 14:21:11 +0200
Subject: [PATCH 4/5] update submodules

---
 lib/CPP_BIDS | 2 +-
 lib/CPP_PTB  | 2 +-
 2 files changed, 2 insertions(+), 2 deletions(-)

diff --git a/lib/CPP_BIDS b/lib/CPP_BIDS
index a17e12a..c23210f 160000
--- a/lib/CPP_BIDS
+++ b/lib/CPP_BIDS
@@ -1 +1 @@
-Subproject commit a17e12a53c0063e36fb017b7a545d605e2c2ef8e
+Subproject commit c23210f5b35faa1505ca2cc35c92c3168564f98a
diff --git a/lib/CPP_PTB b/lib/CPP_PTB
index a8bc6b5..536fdd8 160000
--- a/lib/CPP_PTB
+++ b/lib/CPP_PTB
@@ -1 +1 @@
-Subproject commit a8bc6b5a1457ad78b496fa89037c07f0e548e0c8
+Subproject commit 536fdd8b1b5a9e0fa87d30a4c4070a8eda5487bc

From 05882c2c7b838bbc8a0dee54b9d25c411b9fa12a Mon Sep 17 00:00:00 2001
From: marcobarilari <marcobarilr@gmail.com>
Date: Tue, 11 Aug 2020 16:46:32 +0200
Subject: [PATCH 5/5] update submodules

---
 lib/CPP_PTB | 2 +-
 1 file changed, 1 insertion(+), 1 deletion(-)

diff --git a/lib/CPP_PTB b/lib/CPP_PTB
index 536fdd8..56b44dd 160000
--- a/lib/CPP_PTB
+++ b/lib/CPP_PTB
@@ -1 +1 @@
-Subproject commit 536fdd8b1b5a9e0fa87d30a4c4070a8eda5487bc
+Subproject commit 56b44dde23db03cd9d77165231bbf74e9388930e