diff --git a/README.Rmd b/README.Rmd index 8934064..411b3dd 100644 --- a/README.Rmd +++ b/README.Rmd @@ -26,13 +26,14 @@ that can easily be installed with the `crisprVerse` package. This provides a convenient way of downloading and installing all crisprVerse packages with a single R command. -The package can be installed from Bioconductor using the following -commands in an R session: +The package can be installed from the Bioconductor devel branch using +the following commands in an R session: ```{r, eval=FALSE} if (!requireNamespace("BiocManager", quietly = TRUE)) install.packages("BiocManager") +BiocManager::install(version="devel") BiocManager::install("crisprVerse") ``` diff --git a/README.md b/README.md index 5e74cf5..164d704 100644 --- a/README.md +++ b/README.md @@ -18,13 +18,14 @@ design that can easily be installed with the `crisprVerse` package. This provides a convenient way of downloading and installing all crisprVerse packages with a single R command. -The package can be installed from Bioconductor using the following -commands in an R session: +The package can be installed from the Bioconductor devel branch using +the following commands in an R session: ``` r if (!requireNamespace("BiocManager", quietly = TRUE)) install.packages("BiocManager") +BiocManager::install(version="devel") BiocManager::install("crisprVerse") ``` @@ -42,7 +43,12 @@ You can check that all crisprVerse packages are up-to-date with crisprVerse_update() ``` - ## All crisprVerse packages up-to-date + ## The following package is out of date: + ## + ## • crisprDesign (0.99.134 -> 0.99.135) + ## + ## Start a clean R session then run: + ## BiocManager::install("crisprDesign") The complete documentation for the package can be found [here](https://bioconductor.org/packages/devel/bioc/manuals/crisprVerse/man/crisprVerse.pdf). @@ -82,7 +88,7 @@ sessionInfo() ## [1] stats graphics grDevices utils datasets methods base ## ## other attached packages: - ## [1] crisprDesign_0.99.133 crisprScore_1.1.14 crisprScoreData_1.1.3 + ## [1] crisprDesign_0.99.134 crisprScore_1.1.14 crisprScoreData_1.1.3 ## [4] ExperimentHub_2.5.0 AnnotationHub_3.5.0 BiocFileCache_2.5.0 ## [7] dbplyr_2.2.1 BiocGenerics_0.43.1 crisprBowtie_1.1.1 ## [10] crisprBase_1.1.5 crisprVerse_0.99.8 BiocStyle_2.25.0 @@ -102,7 +108,7 @@ sessionInfo() ## [23] randomForest_4.7-1.1 readr_2.1.2 ## [25] rappdirs_0.3.3 stringr_1.4.1 ## [27] digest_0.6.29 Rsamtools_2.13.4 - ## [29] rmarkdown_2.15.2 basilisk_1.9.2 + ## [29] rmarkdown_2.15.2 basilisk_1.9.3 ## [31] XVector_0.37.0 pkgconfig_2.0.3 ## [33] htmltools_0.5.3 MatrixGenerics_1.9.1 ## [35] fastmap_1.1.0 BSgenome_1.65.2 diff --git a/vignettes/crisprVerse.Rmd b/vignettes/crisprVerse.Rmd index b6a2e93..d44a394 100644 --- a/vignettes/crisprVerse.Rmd +++ b/vignettes/crisprVerse.Rmd @@ -26,13 +26,14 @@ that can easily be installed with the `crisprVerse` package. This provides a convenient way of downloading and installing all crisprVerse packages with a single R command. -The package can be installed from Bioconductor using the following -commands in an R session: +The package can be installed from the Bioconductor devel branch using +the following commands in an R session: ```{r, eval=FALSE} if (!requireNamespace("BiocManager", quietly = TRUE)) install.packages("BiocManager") +BiocManager::install(version="devel") BiocManager::install("crisprVerse") ```