shiny app to explore various prostate cancer datasets
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README.md

Mining human prostate cancer datasets: The 'camcAPP' shiny app

camcAPP is a shiny app that allows various Prostate Cancer datasets to be interrogated through a web-based interface.

The Datasets

The following datasets are accessible through the interface. Each of which has been made available through Gene Expression Omnibus (GEO). We have re-packaged each dataset into a Bioconductor-compatible package

Reproducibility

The code to run particular analyses and produce plots can be downloaded from the Shiny interface. Details of the R packages required are given in the file installBioCPkgs.R.

Once docker is installed, you can get the container required to re-run the analysis with:-

docker pull markdunning/camcapp

The container is then run using:-

docker run -p 8787:8787 markdunning/camcap

Now in a web browser you can navigate to:-

http://localhost:8787

entering the username and password rstudio will open an RStudio session in your web browser.