BACON algorithm that identifies possible contaminated reads given a sequenced genome
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README.md
contamination.fna
driver.py
local_align.py
local_align.pyc
paper.pdf
sample_reads1.fa
suffix_tree.py
suffix_tree.pyc
test.py
test.pyc
unitigs.txt

README.md

BAsic-CONtamination-Search-Algorithm

BACON (BAsic-CONtamination-Search-Algorithm) is an algorithm that identifies possible contaminated reads given a sequenced genome. (More details in paper.pdf).

To run: python driver.py

The result should look like: