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installing NEURON

  • download the OS installer for Mac
  • to get nrn to run, I also had to install X11 as described on their website

compiling mod files

  • the files in the mechanism directory must be compiled before they are usable
  • to do this on mac, drag the entire mechanism directory into the mknrndll function in Applications
    • this results in the creation of an x86_64 subfolder in the mechanism folder

running

  • to run, cd into the mechanism directory
  • running nrngui run_act.hoc should open the NEURON gui and display a plot of an action potential with the current settings
  • run_main.hoc has more complicated settings

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Simulations for characterizing stochastic threshold in biophysical neurons.

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