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Visualization of KEGG pathways from genomic/metagenomic samples
Ruby
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README
extractAnotations.rb
markKeggPathway.rb

README

markKeggPayway.rb will take as input the file of EC numbers that you created in the script before ( or a list of KO numbers) and query the KEGG database for the pathway they belong to and download pictures of those pathways.

The -r option will print out a .csv file of all of the pathways with there respective enzymes.

$ markKeggPathway.rb [-ahkrqvV] file_containing_EC_numbers|file_containing_KO_numbers

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