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| Revision history for MinCED | |
| 0.2.0 13-Jul-2015 | |
| New masking feature to skip over low complexity regions, such as | |
| runs of Ns, to increase speed with heavily scaffolded sequences | |
| 0.1.6 18-Jul-2014 | |
| Fix off-by-one error in the gff output. | |
| 0.1.5 03-Apr-2014 | |
| Changed the behaviour of the '-spacers' option. Without any | |
| output file given the behaviour is the same as before, creating | |
| a file with the input name's prefix and adding '_spacers.fa' to | |
| the end. Now when an output file is given the '_spacers.fa' will | |
| be appended to that name, not the input file's name | |
| 0.1.3 19-Nov-2013 | |
| Fixed bug in gff output where the gff header was being printed | |
| multiple times | |
| 0.1.2 18-Nov_2013 | |
| Minor bug fixes to gff output format | |
| 0.1.1 19-Jul-2013 | |
| Added in new output formats: | |
| * summary gff format | |
| - outputs the start and end of the whole CRISPR locus | |
| * full gff format | |
| - on top of what is written in the summary format, adds | |
| in individual repeat_unit annotations for the direct repeats | |
| * output all spacers found in fasta format | |
| 0.1.0 15-Mar-2011 | |
| Initial fork from CRT | |
| More robust parsing of FASTA files and support for multiFASTA files | |
| Support for finding CRISPRs in datasets with more than one sequence | |
| Fixed some compilation warnings |