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| JFLAGS = -g | |
| JC = javac | |
| JAR = jar | |
| .SUFFIXES: .java .class | |
| JAVA_FILES = CRISPR.java CRISPRFinder.java CRISPRUtil.java DNASequence.java FASTAReader.java SearchUtil.java minced.java IntervalSearchTree.java | |
| JAVA_CLASSES = $(JAVA_FILES:.java=.class) | |
| .PHONY: default clean test | |
| .java.class: | |
| $(JC) $(JFLAGS) $*.java | |
| default: minced.jar | |
| minced.jar: $(JAVA_CLASSES) | |
| $(JAR) cfm minced.jar MANIFEST.txt *class | |
| clean: | |
| $(RM) *.class | |
| test: minced.jar | |
| @echo "Testing..." | |
| @./minced -gff t/Aquifex_aeolicus_VF5.fna >t/Aquifex_aeolicus_VF5.output | |
| @diff -q t/Aquifex_aeolicus_VF5.output t/Aquifex_aeolicus_VF5.expected > /dev/null || (echo "Failed" && exit 1) | |
| @echo "Passed" | |