From 6bdc6fd762a6bb7f90a9d547b2c637fea3df63fe Mon Sep 17 00:00:00 2001
From: ctSkennerton <c.skennerton@gmail.com>
Date: Mon, 18 Nov 2013 17:18:44 +1000
Subject: [PATCH] Added in a manifest file and a makefile for command-line
 installation

---
 MANIFEST.txt |  1 +
 Makefile     | 19 +++++++++++++++++++
 2 files changed, 20 insertions(+)
 create mode 100644 MANIFEST.txt
 create mode 100644 Makefile

diff --git a/MANIFEST.txt b/MANIFEST.txt
new file mode 100644
index 0000000..79f54d4
--- /dev/null
+++ b/MANIFEST.txt
@@ -0,0 +1 @@
+Main-Class: minced
diff --git a/Makefile b/Makefile
new file mode 100644
index 0000000..d2362a8
--- /dev/null
+++ b/Makefile
@@ -0,0 +1,19 @@
+JFLAGS = -g
+JC = javac
+JAR = jar
+.SUFFIXES: .java .class
+
+.java.class:
+	$(JC) $(JFLAGS) $*.java
+
+CLASSES = CRISPR.java CRISPRFinder.java CRISPRUtil.java DNASequence.java FASTAReader.java SearchUtil.java minced.java
+
+default: classes minced
+
+classes: $(CLASSES:.java=.class)
+
+minced: classes
+	$(JAR) cfm minced.jar MANIFEST.txt *class
+
+clean:
+	$(RM) *.class