Connor T. Skennerton ctSkennerton

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ctSkennerton commented on issue dparks1134/DBB#1
@ctSkennerton

Yep, it's a version issue with pysam. Version 0.7.7 has stable memory consumption at ~5Gb. It is also running much faster than before too

ctSkennerton commented on issue dparks1134/DBB#1
@ctSkennerton

I just tried setting the contig length to 5000 and with only one cpu and it still used up all the memory on the system after ~200 contigs. I'm wond…

@ctSkennerton
Memory Requirements
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Null Exception when opening tree
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fxtract command not working
@ctSkennerton

The directory that you have downloaded it to is probably not in your path. If your in the same directory as fxtract then type in ./fxtract -h (see …

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crass make failure
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Need to quote PHYS_DIR in minced launcer shell script
ctSkennerton commented on issue ctSkennerton/minced#5
@ctSkennerton

all path variables have been quoted

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How do I run the tests?
ctSkennerton commented on issue ctSkennerton/minced#6
@ctSkennerton

make target added

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Need an option to get the version
ctSkennerton commented on issue ctSkennerton/minced#7
@ctSkennerton

fixed

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  • @ctSkennerton ba47988
    remove rouge print statement
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Crass make failure #'Utils.h' file not found
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poor performance with Illumina 150bp reads
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Contigs in crispr file have no spacers
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speed improvements
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32bit build issues
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