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fixed make-biased-reads to not use pygr

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1 parent 76fe961 commit 879e63ee6351cab9ddcb64ec87ebd5475a1c2a11 @ctb committed Mar 25, 2012
Showing with 1 addition and 2 deletions.
  1. +1 −2 pipeline/make-biased-reads.py
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3 pipeline/make-biased-reads.py
@@ -1,7 +1,6 @@
#! /usr/bin/env python
import screed
import sys
-import pygr.sequence
import random
import math
@@ -40,7 +39,7 @@
# reverse complement?
if random.choice([0, 1]) == 0:
- read = str(-pygr.sequence.Sequence(read, ""))
+ read = screed.rc(read)
# error?
was_mut = False

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